Wall clock time and date at job start Mon Mar 30 2020 01:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35704 * 116.99496 * 2 1 4 4 C 1.39008 * 119.90497 * 180.02562 * 3 2 1 5 5 C 1.37676 * 120.09463 * 179.97438 * 4 3 2 6 6 C 1.39795 * 119.90745 * 359.97438 * 5 4 3 7 7 C 1.47463 * 120.09562 * 180.02562 * 6 5 4 8 8 O 1.21513 * 119.99816 * 0.02562 * 7 6 5 9 9 O 1.34745 * 120.00510 * 180.27714 * 7 6 5 10 10 C 1.45188 * 117.00515 * 179.72517 * 9 7 6 11 11 H 1.09006 * 109.47457 * 330.00155 * 10 9 7 12 12 C 1.50699 * 109.47292 * 210.00190 * 10 9 7 13 13 H 1.07998 * 120.00280 * 0.02562 * 12 10 9 14 14 C 1.37887 * 119.99962 * 179.97438 * 12 10 9 15 15 N 1.31514 * 120.00086 * 0.02562 * 14 12 10 16 16 Si 1.86806 * 119.99733 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47003 * 90.00339 * 16 14 12 18 18 H 1.48501 * 109.46891 * 210.00298 * 16 14 12 19 19 H 1.48501 * 109.47193 * 330.00392 * 16 14 12 20 20 C 1.52998 * 109.47129 * 90.00315 * 10 9 7 21 21 C 1.53005 * 117.49743 * 8.74691 * 20 10 9 22 22 C 1.52997 * 117.49746 * 300.08684 * 20 10 9 23 23 C 1.39790 * 119.81008 * 0.28440 * 6 5 4 24 24 C 1.37684 * 119.90723 * 359.45807 * 23 6 5 25 25 H 1.09006 * 109.47313 * 299.99990 * 1 2 3 26 26 H 1.08998 * 109.47526 * 60.00546 * 1 2 3 27 27 H 1.09005 * 109.46815 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.95215 * 359.97398 * 4 3 2 29 29 H 1.08006 * 120.04641 * 179.97438 * 5 4 3 30 30 H 0.96994 * 119.99683 * 180.02562 * 15 14 12 31 31 H 1.09005 * 115.55032 * 154.41626 * 20 10 9 32 32 H 1.09000 * 117.49878 * 0.02562 * 21 20 10 33 33 H 1.08995 * 117.49594 * 145.02288 * 21 20 10 34 34 H 1.09006 * 117.49892 * 214.97904 * 22 20 10 35 35 H 1.09001 * 117.50419 * 359.97438 * 22 20 10 36 36 H 1.08008 * 120.04757 * 179.70113 * 23 6 5 37 37 H 1.07998 * 119.95427 * 180.25789 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 3.4333 1.2798 -0.0005 5 6 4.0623 2.5044 -0.0011 6 6 3.3028 3.6781 -0.0016 7 6 3.9722 4.9920 -0.0028 8 8 5.1856 5.0557 -0.0037 9 8 3.2383 6.1221 0.0024 10 6 3.9642 7.3795 0.0071 11 1 4.9170 7.2471 0.5197 12 6 3.1502 8.4268 0.7223 13 1 2.1841 8.1727 1.1328 14 6 3.6394 9.7093 0.8537 15 7 4.8161 10.0187 0.3544 16 14 2.6306 11.0073 1.7410 17 1 2.9705 10.9957 3.1865 18 1 2.9344 12.3448 1.1718 19 1 1.1851 10.7132 1.5701 20 6 4.2182 7.8272 -1.4337 21 6 3.5241 7.0436 -2.5497 22 6 5.0316 6.8922 -2.3310 23 6 1.9069 3.6025 0.0044 24 6 1.2859 2.3737 -0.0004 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 4.0193 0.3726 -0.0005 29 1 5.1410 2.5584 -0.0011 30 1 5.1602 10.9207 0.4472 31 1 4.3468 8.9001 -1.5770 32 1 2.8863 6.2095 -2.2573 33 1 3.1965 7.6010 -3.4272 34 1 5.6951 7.3500 -3.0648 35 1 5.3862 5.9583 -1.8947 36 1 1.3164 4.5069 0.0089 37 1 0.2076 2.3145 0.0000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344936644.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:46 Heat of formation + Delta-G solvation = -88.573233 kcal Electronic energy + Delta-G solvation = -21048.496603 eV Core-core repulsion = 17756.630254 eV Total energy + Delta-G solvation = -3291.866349 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.68678 -40.88437 -38.69585 -37.79714 -36.49596 -34.87294 -32.35013 -31.59435 -29.86673 -28.30206 -25.66327 -24.56712 -23.63439 -23.19482 -22.02084 -20.86112 -19.39735 -18.91242 -18.49454 -17.72928 -17.38009 -16.95571 -16.69589 -16.41645 -15.71492 -15.64348 -14.91409 -14.73566 -14.49044 -14.35468 -13.89771 -13.61693 -13.44680 -13.23482 -12.99483 -12.80492 -12.78543 -12.36949 -12.22538 -12.05874 -11.95150 -11.84791 -11.46948 -11.34949 -11.03962 -10.48666 -10.43334 -10.16012 -9.37686 -8.26159 -6.42756 -0.26825 0.27828 1.42327 1.44194 1.55430 1.60740 1.98044 2.25404 2.43050 2.73651 3.01785 3.14936 3.70133 3.82567 3.87126 4.06572 4.14955 4.25748 4.28165 4.31999 4.44316 4.46346 4.53061 4.74744 4.77731 4.81840 4.94928 4.97828 5.08302 5.19373 5.23765 5.29081 5.36064 5.52330 5.54146 5.56686 5.88548 6.09566 6.30198 6.61978 6.97261 7.27622 8.81474 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.004385 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.983110 B = 6384.337720 C = 6933.697784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.321 6.321 3 C 0.162 3.838 4 C -0.164 4.164 5 C -0.023 4.023 6 C -0.184 4.184 7 C 0.494 3.506 8 O -0.548 6.548 9 O -0.351 6.351 10 C 0.255 3.745 11 H 0.005 0.995 12 C -0.544 4.544 13 H 0.068 0.932 14 C 0.019 3.981 15 N -0.913 5.913 16 Si 0.980 3.020 17 H -0.273 1.273 18 H -0.276 1.276 19 H -0.261 1.261 20 C -0.145 4.145 21 C -0.166 4.166 22 C -0.202 4.202 23 C -0.023 4.023 24 C -0.214 4.214 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.124 0.876 28 H 0.161 0.839 29 H 0.140 0.860 30 H 0.269 0.731 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.141 0.859 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.020 -17.516 -2.353 20.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.234 6.234 3 C 0.116 3.884 4 C -0.182 4.182 5 C -0.041 4.041 6 C -0.185 4.185 7 C 0.341 3.659 8 O -0.442 6.442 9 O -0.267 6.267 10 C 0.202 3.798 11 H 0.023 0.977 12 C -0.582 4.582 13 H 0.087 0.913 14 C -0.181 4.181 15 N -0.551 5.551 16 Si 0.803 3.197 17 H -0.199 1.199 18 H -0.202 1.202 19 H -0.185 1.185 20 C -0.164 4.164 21 C -0.203 4.203 22 C -0.239 4.239 23 C -0.042 4.042 24 C -0.232 4.232 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.142 0.858 28 H 0.179 0.821 29 H 0.158 0.842 30 H 0.078 0.922 31 H 0.124 0.876 32 H 0.106 0.894 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.159 0.841 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -9.488 -17.501 -2.379 20.049 hybrid contribution 0.139 1.270 0.427 1.347 sum -9.349 -16.231 -1.952 18.832 Atomic orbital electron populations 1.23492 0.75804 1.06107 1.02811 1.86043 1.24019 1.25980 1.87311 1.19445 0.92461 0.84860 0.91684 1.20519 0.91894 0.98266 1.07506 1.21118 1.00663 0.89988 0.92315 1.19203 0.94989 0.89522 1.14792 1.21732 0.85723 0.86472 0.71925 1.90720 1.16519 1.88657 1.48307 1.86514 1.42049 1.15774 1.82383 1.19754 0.91245 0.76383 0.92463 0.97744 1.21235 1.05247 0.94632 1.37057 0.91340 1.25808 0.96271 1.00094 0.95953 1.70112 1.18745 1.21147 1.45080 0.85229 0.78971 0.77228 0.78269 1.19883 1.20157 1.18547 1.22727 1.03340 0.98330 0.91991 1.22862 0.94079 1.03039 1.00270 1.23139 0.94432 1.02199 1.04127 1.21385 0.92459 0.99154 0.91154 1.21458 1.01922 0.90650 1.09206 0.91288 0.91200 0.85787 0.82126 0.84235 0.92153 0.87631 0.89409 0.87759 0.88708 0.89895 0.84137 0.81587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.32 -5.65 10.48 -90.25 -0.95 -6.59 16 3 C 0.16 3.45 6.70 22.64 0.15 3.61 16 4 C -0.16 -3.73 9.97 22.32 0.22 -3.51 16 5 C -0.02 -0.65 9.58 22.51 0.22 -0.44 16 6 C -0.18 -6.30 5.87 -20.09 -0.12 -6.42 16 7 C 0.49 22.05 6.84 70.25 0.48 22.53 16 8 O -0.55 -27.38 13.43 19.79 0.27 -27.11 16 9 O -0.35 -17.14 7.62 -56.56 -0.43 -17.57 16 10 C 0.25 14.18 2.41 29.85 0.07 14.25 16 11 H 0.00 0.31 7.16 -2.38 -0.02 0.29 16 12 C -0.54 -31.10 8.90 25.60 0.23 -30.87 16 13 H 0.07 3.81 7.81 -2.91 -0.02 3.79 16 14 C 0.02 1.04 5.20 84.66 0.44 1.48 16 15 N -0.91 -52.98 11.59 21.45 0.25 -52.73 16 16 Si 0.98 43.03 29.54 68.60 2.03 45.06 16 17 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 18 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 19 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 20 C -0.15 -7.45 5.27 -10.79 -0.06 -7.51 16 21 C -0.17 -6.98 9.80 30.62 0.30 -6.68 16 22 C -0.20 -9.10 9.85 30.62 0.30 -8.80 16 23 C -0.02 -0.66 9.61 22.51 0.22 -0.44 16 24 C -0.21 -4.53 9.01 22.32 0.20 -4.33 16 25 H 0.07 0.54 7.65 -2.38 -0.02 0.52 16 26 H 0.07 0.53 7.65 -2.39 -0.02 0.52 16 27 H 0.12 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 29 H 0.14 4.04 7.64 -2.91 -0.02 4.02 16 30 H 0.27 14.63 8.31 -92.71 -0.77 13.85 16 31 H 0.11 5.92 6.46 -2.38 -0.02 5.91 16 32 H 0.09 3.62 6.91 -2.39 -0.02 3.61 16 33 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 34 H 0.09 3.86 8.14 -2.38 -0.02 3.84 16 35 H 0.08 3.94 5.36 -2.39 -0.01 3.93 16 36 H 0.14 4.01 7.60 -2.91 -0.02 3.99 16 37 H 0.17 2.36 6.27 -2.91 -0.02 2.35 16 Total: -1.00 -69.40 314.13 6.01 -63.39 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 1.08 Total: 21.48 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: 3.77 Total: -25.91 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.25 Total: -52.73 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -1.11 Total: -51.28 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -69.40 6.01 -63.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344936644.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.187 kcal (2) G-P(sol) polarization free energy of solvation -69.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds