Wall clock time and date at job start Mon Mar 30 2020 01:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00213 * 2 1 4 4 H 1.48501 * 109.47189 * 270.00314 * 3 2 1 5 5 H 1.48509 * 109.46873 * 29.99968 * 3 2 1 6 6 H 1.48497 * 109.47483 * 149.99907 * 3 2 1 7 7 C 1.37884 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00291 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99943 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47293 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00143 * 180.02562 * 10 9 7 12 12 O 1.21586 * 119.99963 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99840 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99787 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47047 * 179.97438 * 14 13 11 16 16 H 1.09002 * 110.13244 * 305.70023 * 15 14 13 17 17 O 1.43942 * 110.21397 * 67.43979 * 15 14 13 18 18 C 1.43943 * 104.94968 * 147.59786 * 17 15 14 19 19 C 1.51075 * 105.95719 * 331.55753 * 18 17 15 20 20 C 1.37974 * 132.68914 * 197.71180 * 19 18 17 21 21 C 1.38291 * 119.91945 * 180.02562 * 20 19 18 22 22 C 1.38265 * 120.04356 * 359.95514 * 21 20 19 23 23 C 1.38293 * 120.04067 * 0.02562 * 22 21 20 24 24 C 1.37977 * 119.91971 * 0.02562 * 23 22 21 25 25 H 0.96991 * 120.00057 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47189 * 59.99978 * 9 7 2 27 27 H 1.09001 * 109.47154 * 300.00045 * 9 7 2 28 28 H 0.97001 * 119.99748 * 359.97438 * 10 9 7 29 29 H 0.96995 * 120.00115 * 0.02562 * 13 11 10 30 30 H 1.09003 * 109.46851 * 59.99997 * 14 13 11 31 31 H 1.09003 * 109.47052 * 299.99988 * 14 13 11 32 32 H 1.08995 * 110.15652 * 212.43032 * 18 17 15 33 33 H 1.09006 * 110.15117 * 90.67672 * 18 17 15 34 34 H 1.07997 * 120.03941 * 0.02562 * 20 19 18 35 35 H 1.08000 * 119.97933 * 179.97438 * 21 20 19 36 36 H 1.08002 * 119.98121 * 179.97438 * 22 21 20 37 37 H 1.07999 * 120.04527 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5585 -5.1056 -0.0011 13 7 2.6297 -5.9078 -0.0016 14 6 2.1414 -7.2890 -0.0016 15 6 3.3314 -8.2507 -0.0029 16 1 3.9979 -8.0217 -0.8345 17 8 4.0450 -8.1606 1.2440 18 6 4.5557 -9.4862 1.4762 19 6 3.5902 -10.4283 0.7959 20 6 3.3600 -11.7829 0.9210 21 6 2.3876 -12.3915 0.1487 22 6 1.6463 -11.6434 -0.7471 23 6 1.8767 -10.2856 -0.8723 24 6 2.8476 -9.6784 -0.1025 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 3.1568 -3.4354 -0.0009 29 1 3.5833 -5.7305 -0.0012 30 1 1.5354 -7.4601 -0.8914 31 1 1.5362 -7.4604 0.8887 32 1 4.5915 -9.6929 2.5457 33 1 5.5495 -9.5875 1.0400 34 1 3.9385 -12.3672 1.6213 35 1 2.2069 -13.4519 0.2456 36 1 0.8875 -12.1199 -1.3501 37 1 1.2980 -9.7012 -1.5723 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346426759.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:08 Heat of formation + Delta-G solvation = -43.847256 kcal Electronic energy + Delta-G solvation = -20180.019364 eV Core-core repulsion = 16922.385230 eV Total energy + Delta-G solvation = -3257.634134 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.09028 -39.04451 -37.66166 -34.70086 -33.90867 -32.33894 -31.78053 -31.60350 -29.11762 -27.03472 -25.64317 -23.98956 -22.40635 -21.85486 -21.09411 -20.08123 -18.07419 -17.11441 -16.72926 -16.48091 -15.87429 -15.75975 -15.24232 -15.00300 -14.54027 -14.44319 -13.99788 -13.67893 -13.36021 -13.17764 -13.00714 -12.73591 -12.25335 -12.19892 -11.91122 -11.69503 -11.54115 -11.18774 -10.91301 -10.84232 -10.31568 -10.25608 -9.36577 -9.31865 -9.23337 -8.90766 -8.72860 -8.62347 -7.68868 -6.10796 -4.16972 0.88269 0.99767 3.26356 3.28103 3.33906 3.36086 3.39916 3.63180 3.89301 4.03184 4.30508 4.38016 4.57331 4.67683 4.82279 4.95339 5.04779 5.09026 5.16864 5.23232 5.25210 5.29903 5.49572 5.66777 5.68824 5.93195 6.01827 6.03823 6.12437 6.45455 6.58336 6.90146 7.18653 7.58266 7.61372 7.63383 7.96941 8.10388 8.82270 9.01252 9.39425 9.54030 10.99590 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.045203 B = 0.002860 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.285396 B = 9787.950165 C =10245.438373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.729 5.729 11 C 0.694 3.306 12 O -0.603 6.603 13 N -0.754 5.754 14 C 0.150 3.850 15 C 0.110 3.890 16 H 0.092 0.908 17 O -0.348 6.348 18 C 0.089 3.911 19 C -0.129 4.129 20 C -0.096 4.096 21 C -0.115 4.115 22 C -0.115 4.115 23 C -0.087 4.087 24 C -0.120 4.120 25 H 0.265 0.735 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.387 0.613 29 H 0.394 0.606 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.896 -24.808 -0.397 26.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.146 3.854 10 N -0.381 5.381 11 C 0.393 3.607 12 O -0.482 6.482 13 N -0.412 5.412 14 C 0.025 3.975 15 C 0.052 3.948 16 H 0.109 0.891 17 O -0.267 6.267 18 C 0.013 3.987 19 C -0.130 4.130 20 C -0.114 4.114 21 C -0.133 4.133 22 C -0.133 4.133 23 C -0.105 4.105 24 C -0.121 4.121 25 H 0.075 0.925 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.219 0.781 29 H 0.228 0.772 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.605 -24.631 -0.251 26.092 hybrid contribution 1.276 0.813 -0.112 1.517 sum 9.881 -23.818 -0.363 25.789 Atomic orbital electron populations 1.69979 1.06088 1.27212 1.49092 1.24949 0.94913 0.99389 0.94835 0.86411 0.79609 0.82685 0.78154 1.20511 1.21040 1.19781 1.21240 0.93282 0.90459 1.52914 0.91941 1.18973 0.87803 0.81077 0.97588 1.45697 1.10787 1.04373 1.77260 1.16123 0.85132 0.81060 0.78354 1.90866 1.14263 1.84285 1.58800 1.45025 1.09033 1.04705 1.82426 1.21119 0.93796 0.79568 1.03032 1.21635 0.93781 0.91256 0.88125 0.89056 1.89193 1.70944 1.27407 1.39163 1.21768 0.95229 0.80651 1.01059 1.21081 0.98303 0.94954 0.98612 1.20390 0.98470 0.92738 0.99852 1.21162 0.95914 1.00064 0.96145 1.21178 0.99742 0.93610 0.98779 1.20539 0.96379 0.94772 0.98839 1.20834 0.97732 0.95567 0.97995 0.92500 0.95758 0.95757 0.78133 0.77247 0.90520 0.91030 0.88412 0.90413 0.85702 0.85458 0.85293 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 7 C -0.54 -15.05 9.28 -34.44 -0.32 -15.37 16 8 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 9 C 0.27 7.36 5.43 -5.20 -0.03 7.33 16 10 N -0.73 -16.30 5.55 -66.42 -0.37 -16.66 16 11 C 0.69 15.08 8.57 -86.91 -0.74 14.33 16 12 O -0.60 -15.68 16.34 5.29 0.09 -15.60 16 13 N -0.75 -12.18 5.55 -65.22 -0.36 -12.54 16 14 C 0.15 2.13 5.30 -4.04 -0.02 2.11 16 15 C 0.11 1.23 3.39 -27.70 -0.09 1.14 16 16 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 17 O -0.35 -4.19 11.39 -35.23 -0.40 -4.59 16 18 C 0.09 0.80 7.63 36.19 0.28 1.07 16 19 C -0.13 -1.23 6.32 -104.40 -0.66 -1.89 16 20 C -0.10 -0.76 10.04 -39.66 -0.40 -1.16 16 21 C -0.11 -0.84 10.05 -39.55 -0.40 -1.24 16 22 C -0.12 -0.91 10.05 -39.55 -0.40 -1.31 16 23 C -0.09 -0.82 9.80 -39.66 -0.39 -1.21 16 24 C -0.12 -1.26 5.73 -104.40 -0.60 -1.86 16 25 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.39 7.41 8.34 -40.82 -0.34 7.07 16 29 H 0.39 5.30 8.49 -40.82 -0.35 4.95 16 30 H 0.08 1.07 7.87 -51.93 -0.41 0.66 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.13 1.08 7.89 -52.49 -0.41 0.67 16 LS Contribution 321.53 15.07 4.85 4.85 Total: -1.00 -34.77 321.53 -9.20 -43.97 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -4.85 Total: 6.66 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -3.87 Total: 3.62 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.01 Total: -55.10 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.31 Total: -20.19 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.77 -9.20 -43.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346426759.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.122 kcal (2) G-P(sol) polarization free energy of solvation -34.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds