Wall clock time and date at job start Mon Mar 30 2020 01:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00213 * 2 1 4 4 H 1.48501 * 109.47189 * 270.00314 * 3 2 1 5 5 H 1.48509 * 109.46873 * 29.99968 * 3 2 1 6 6 H 1.48497 * 109.47483 * 149.99907 * 3 2 1 7 7 C 1.37884 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00291 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99943 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47293 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00143 * 180.02562 * 10 9 7 12 12 O 1.21586 * 119.99963 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99840 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99787 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47047 * 179.97438 * 14 13 11 16 16 H 1.09002 * 110.13244 * 305.70023 * 15 14 13 17 17 O 1.43942 * 110.21397 * 67.43979 * 15 14 13 18 18 C 1.43943 * 104.94968 * 147.59786 * 17 15 14 19 19 C 1.51075 * 105.95719 * 331.55753 * 18 17 15 20 20 C 1.37974 * 132.68914 * 197.71180 * 19 18 17 21 21 C 1.38291 * 119.91945 * 180.02562 * 20 19 18 22 22 C 1.38265 * 120.04356 * 359.95514 * 21 20 19 23 23 C 1.38293 * 120.04067 * 0.02562 * 22 21 20 24 24 C 1.37977 * 119.91971 * 0.02562 * 23 22 21 25 25 H 0.96991 * 120.00057 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47189 * 59.99978 * 9 7 2 27 27 H 1.09001 * 109.47154 * 300.00045 * 9 7 2 28 28 H 0.97001 * 119.99748 * 359.97438 * 10 9 7 29 29 H 0.96995 * 120.00115 * 0.02562 * 13 11 10 30 30 H 1.09003 * 109.46851 * 59.99997 * 14 13 11 31 31 H 1.09003 * 109.47052 * 299.99988 * 14 13 11 32 32 H 1.08995 * 110.15652 * 212.43032 * 18 17 15 33 33 H 1.09006 * 110.15117 * 90.67672 * 18 17 15 34 34 H 1.07997 * 120.03941 * 0.02562 * 20 19 18 35 35 H 1.08000 * 119.97933 * 179.97438 * 21 20 19 36 36 H 1.08002 * 119.98121 * 179.97438 * 22 21 20 37 37 H 1.07999 * 120.04527 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5585 -5.1056 -0.0011 13 7 2.6297 -5.9078 -0.0016 14 6 2.1414 -7.2890 -0.0016 15 6 3.3314 -8.2507 -0.0029 16 1 3.9979 -8.0217 -0.8345 17 8 4.0450 -8.1606 1.2440 18 6 4.5557 -9.4862 1.4762 19 6 3.5902 -10.4283 0.7959 20 6 3.3600 -11.7829 0.9210 21 6 2.3876 -12.3915 0.1487 22 6 1.6463 -11.6434 -0.7471 23 6 1.8767 -10.2856 -0.8723 24 6 2.8476 -9.6784 -0.1025 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 3.1568 -3.4354 -0.0009 29 1 3.5833 -5.7305 -0.0012 30 1 1.5354 -7.4601 -0.8914 31 1 1.5362 -7.4604 0.8887 32 1 4.5915 -9.6929 2.5457 33 1 5.5495 -9.5875 1.0400 34 1 3.9385 -12.3672 1.6213 35 1 2.2069 -13.4519 0.2456 36 1 0.8875 -12.1199 -1.3501 37 1 1.2980 -9.7012 -1.5723 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346426759.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:08 Heat of formation + Delta-G solvation = -69.667110 kcal Electronic energy + Delta-G solvation = -20181.138997 eV Core-core repulsion = 16922.385230 eV Total energy + Delta-G solvation = -3258.753767 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.86556 -40.76429 -38.40712 -36.35673 -35.73187 -34.34763 -32.71069 -32.28765 -30.27583 -28.84583 -26.58235 -25.08788 -24.22276 -22.56903 -21.99375 -21.79855 -19.81993 -18.12499 -17.97583 -17.60768 -17.28419 -16.73120 -16.63080 -16.33798 -16.20534 -15.45528 -15.11511 -14.96795 -14.67406 -14.38651 -14.02918 -14.00224 -13.81616 -13.51421 -13.16228 -12.94475 -12.87616 -12.69492 -12.29283 -12.21448 -11.84862 -11.46901 -11.28215 -11.08902 -10.79776 -10.31956 -9.87250 -9.60581 -9.57465 -8.27477 -6.43928 0.23262 0.36819 1.44009 1.47204 1.58150 1.83995 2.22347 2.40306 2.69386 2.76553 3.07365 3.17404 3.48875 3.65435 3.77288 4.00229 4.10144 4.19824 4.41282 4.44811 4.51808 4.60126 4.74561 4.76274 4.88631 5.05807 5.08695 5.27724 5.29756 5.42137 5.47023 5.49942 5.52995 5.67496 5.71184 5.85671 5.97908 6.24315 6.67679 7.24743 7.29878 7.70218 8.85105 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.045203 B = 0.002860 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.285396 B = 9787.950165 C =10245.438373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.988 3.012 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.256 1.256 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.722 5.722 11 C 0.692 3.308 12 O -0.649 6.649 13 N -0.729 5.729 14 C 0.150 3.850 15 C 0.121 3.879 16 H 0.108 0.892 17 O -0.372 6.372 18 C 0.086 3.914 19 C -0.140 4.140 20 C -0.100 4.100 21 C -0.114 4.114 22 C -0.121 4.121 23 C -0.103 4.103 24 C -0.145 4.145 25 H 0.269 0.731 26 H -0.013 1.013 27 H -0.016 1.016 28 H 0.405 0.595 29 H 0.412 0.588 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.149 0.851 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.366 -25.839 -0.364 28.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.180 1.180 7 C -0.593 4.593 8 H 0.102 0.898 9 C 0.162 3.838 10 N -0.376 5.376 11 C 0.391 3.609 12 O -0.532 6.532 13 N -0.387 5.387 14 C 0.025 3.975 15 C 0.063 3.937 16 H 0.125 0.875 17 O -0.291 6.291 18 C 0.010 3.990 19 C -0.140 4.140 20 C -0.118 4.118 21 C -0.131 4.131 22 C -0.139 4.139 23 C -0.121 4.121 24 C -0.146 4.146 25 H 0.078 0.922 26 H 0.005 0.995 27 H 0.002 0.998 28 H 0.240 0.760 29 H 0.248 0.752 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.128 0.872 33 H 0.115 0.885 34 H 0.168 0.832 35 H 0.173 0.827 36 H 0.167 0.833 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.160 -25.720 -0.217 28.038 hybrid contribution 0.470 0.973 -0.107 1.086 sum 11.630 -24.747 -0.324 27.345 Atomic orbital electron populations 1.70143 1.08295 1.28591 1.49974 1.26086 0.95806 1.03918 0.93860 0.85119 0.78418 0.76802 0.78624 1.19492 1.20917 1.17977 1.21602 0.94323 0.90441 1.52896 0.89818 1.18425 0.88112 0.83318 0.93982 1.45294 1.10951 1.03731 1.77600 1.16290 0.85040 0.81625 0.77930 1.90832 1.16681 1.84990 1.60737 1.44797 1.09190 1.04315 1.80363 1.21238 0.95405 0.78805 1.02040 1.21493 0.92666 0.90950 0.88542 0.87472 1.89146 1.71164 1.29385 1.39450 1.21981 0.95835 0.79170 1.02015 1.21270 0.98461 0.95773 0.98535 1.20750 0.98617 0.92303 1.00109 1.21564 0.95004 1.01445 0.95119 1.21498 1.00211 0.93084 0.99108 1.20735 0.96494 0.95767 0.99143 1.20857 0.99111 0.95131 0.99472 0.92215 0.99495 0.99759 0.75970 0.75213 0.90416 0.93225 0.87227 0.88477 0.83242 0.82682 0.83290 0.85169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.28 13.29 21.45 0.28 -56.99 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.99 43.03 29.54 68.60 2.03 45.06 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 7 C -0.55 -31.01 9.28 25.60 0.24 -30.77 16 8 H 0.08 4.22 7.60 -2.91 -0.02 4.20 16 9 C 0.28 16.35 5.43 85.63 0.46 16.81 16 10 N -0.72 -32.80 5.55 -482.30 -2.68 -35.48 16 11 C 0.69 30.77 8.57 179.05 1.53 32.31 16 12 O -0.65 -35.30 16.34 -3.99 -0.07 -35.37 16 13 N -0.73 -23.49 5.55 -478.52 -2.66 -26.14 16 14 C 0.15 4.31 5.30 86.38 0.46 4.76 16 15 C 0.12 2.64 3.39 29.97 0.10 2.74 16 16 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 17 O -0.37 -8.58 11.39 -148.98 -1.70 -10.27 16 18 C 0.09 1.38 7.63 71.35 0.54 1.93 16 19 C -0.14 -2.44 6.32 -19.72 -0.12 -2.56 16 20 C -0.10 -1.33 10.04 22.22 0.22 -1.11 16 21 C -0.11 -1.37 10.05 22.29 0.22 -1.15 16 22 C -0.12 -1.72 10.05 22.29 0.22 -1.49 16 23 C -0.10 -1.88 9.80 22.22 0.22 -1.67 16 24 C -0.14 -2.93 5.73 -19.72 -0.11 -3.04 16 25 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 26 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 27 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 28 H 0.40 15.23 8.34 -92.71 -0.77 14.45 16 29 H 0.41 10.56 8.49 -92.71 -0.79 9.78 16 30 H 0.08 2.23 7.87 -2.39 -0.02 2.21 16 31 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 35 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 36 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 37 H 0.13 2.21 7.89 -2.91 -0.02 2.18 16 Total: -1.00 -77.63 321.53 -0.79 -78.42 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -0.46 Total: 23.39 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: 4.45 Total: 17.37 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -5.05 Total: -118.61 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -1.76 Total: -45.64 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -77.63 -0.79 -78.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346426759.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.758 kcal (2) G-P(sol) polarization free energy of solvation -77.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds