Wall clock time and date at job start Mon Mar 30 2020 01:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.50696 * 112.83177 * 352.72809 * 3 2 1 5 5 O 1.21283 * 120.00395 * 129.66682 * 4 3 2 6 6 N 1.34782 * 119.99649 * 309.66561 * 4 3 2 7 7 C 1.47062 * 136.06172 * 359.62781 * 6 4 3 8 8 C 1.53232 * 88.08691 * 207.20439 * 7 6 4 9 9 O 1.42902 * 114.01473 * 87.71453 * 8 7 6 10 10 C 1.50698 * 114.32967 * 220.46838 * 8 7 6 11 11 H 1.08001 * 119.99539 * 93.75831 * 10 8 7 12 12 C 1.37872 * 120.00070 * 273.76070 * 10 8 7 13 13 N 1.31518 * 120.00189 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 120.00102 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.46982 * 89.99849 * 14 12 10 16 16 H 1.48496 * 109.47526 * 210.00207 * 14 12 10 17 17 H 1.48503 * 109.47168 * 330.00428 * 14 12 10 18 18 C 1.47070 * 136.05311 * 180.02562 * 6 4 3 19 19 C 1.53884 * 113.58979 * 221.50346 * 3 2 1 20 20 C 1.53249 * 86.88821 * 220.42955 * 19 3 2 21 21 C 1.52458 * 128.58825 * 165.10900 * 20 19 3 22 22 C 1.52457 * 128.58888 * 245.05872 * 20 19 3 23 23 C 1.53262 * 87.69045 * 25.08550 * 20 19 3 24 24 H 1.08998 * 113.46501 * 321.94451 * 7 6 4 25 25 H 1.09005 * 113.46658 * 92.37231 * 7 6 4 26 26 H 0.96697 * 114.00252 * 86.39109 * 9 8 7 27 27 H 0.96999 * 119.99931 * 179.97438 * 13 12 10 28 28 H 1.08994 * 113.46746 * 267.62258 * 18 6 4 29 29 H 1.09003 * 113.46845 * 38.06422 * 18 6 4 30 30 H 1.09008 * 113.64544 * 334.93323 * 19 3 2 31 31 H 1.09005 * 113.64818 * 105.92734 * 19 3 2 32 32 H 1.09003 * 117.51257 * 225.05287 * 21 20 19 33 33 H 1.09002 * 117.51166 * 10.15137 * 21 20 19 34 34 H 1.08999 * 117.50907 * 349.84586 * 22 20 19 35 35 H 1.08997 * 117.51520 * 134.94588 * 22 20 19 36 36 H 1.09004 * 113.64314 * 220.42289 * 23 20 19 37 37 H 1.08997 * 113.64914 * 89.41836 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1933 -1.3768 0.1758 5 8 4.0467 -1.7752 -0.5884 6 7 2.7684 -2.1661 1.1823 7 6 1.7960 -2.0517 2.2796 8 6 2.6452 -3.0542 3.0682 9 8 3.6902 -2.4538 3.8361 10 6 1.8464 -4.0740 3.8382 11 1 1.6266 -5.0342 3.3952 12 6 1.3963 -3.7814 5.1081 13 7 1.6644 -2.6124 5.6477 14 14 0.4056 -5.0454 6.0623 15 1 1.3259 -5.9004 6.8542 16 1 -0.5342 -4.3495 6.9775 17 1 -0.3624 -5.8912 5.1136 18 6 3.0785 -3.5182 1.6709 19 6 3.2233 1.0571 0.9345 20 6 4.2574 1.3090 -0.1681 21 6 5.2204 2.4813 -0.3188 22 6 5.7612 1.0605 -0.1362 23 6 3.2234 0.7864 -1.1714 24 1 1.7660 -1.0602 2.7314 25 1 0.8058 -2.4286 2.0231 26 1 3.4142 -2.1625 4.7158 27 1 1.3474 -2.4064 6.5410 28 1 2.4338 -4.2900 1.2505 29 1 4.1368 -3.7710 1.6063 30 1 2.5690 1.9083 1.1231 31 1 3.6496 0.6390 1.8465 32 1 5.3137 2.9324 -1.3067 33 1 5.3136 3.1677 0.5228 34 1 6.2102 0.8124 0.8256 35 1 6.2103 0.5772 -1.0038 36 1 3.6498 0.1511 -1.9478 37 1 2.5692 1.5622 -1.5691 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348613452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:16 Heat of formation + Delta-G solvation = 39.274275 kcal Electronic energy + Delta-G solvation = -21727.026244 eV Core-core repulsion = 18472.996530 eV Total energy + Delta-G solvation = -3254.029714 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.84454 -39.01939 -37.09198 -36.28557 -34.07653 -33.58828 -32.23628 -29.07223 -26.14309 -25.97348 -25.21033 -24.41829 -22.42090 -20.90580 -19.16879 -18.39039 -17.82626 -17.01057 -15.94303 -15.90057 -15.26789 -15.14605 -14.66066 -14.22112 -14.02502 -13.69723 -13.49138 -13.22822 -12.97466 -12.63250 -12.47365 -12.24344 -12.08326 -11.94999 -11.60538 -11.44597 -11.29980 -11.09842 -11.05577 -10.51951 -10.40060 -10.31511 -10.22873 -9.92956 -9.62850 -9.28058 -8.82183 -8.48612 -7.97054 -6.44875 -4.55034 2.56265 2.73661 2.98801 3.12927 3.20954 3.23499 3.37469 3.66408 4.06257 4.15070 4.28906 4.42739 4.61034 4.65814 4.79827 4.88010 5.04161 5.50209 5.51645 5.63715 5.66902 5.75443 5.82157 5.90487 5.98162 6.01165 6.07745 6.11817 6.18506 6.31759 6.43867 6.51697 6.61445 7.04257 7.55598 7.58731 7.74582 8.31911 8.48339 8.55917 9.16511 9.42495 10.62072 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.025664 B = 0.005143 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.781644 B = 5443.373642 C = 5656.612074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C 0.224 3.776 3 C -0.007 4.007 4 C 0.568 3.432 5 O -0.540 6.540 6 N -0.628 5.628 7 C 0.071 3.929 8 C 0.243 3.757 9 O -0.570 6.570 10 C -0.534 4.534 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.898 5.898 14 Si 0.909 3.091 15 H -0.276 1.276 16 H -0.283 1.283 17 H -0.271 1.271 18 C 0.110 3.890 19 C -0.070 4.070 20 C -0.158 4.158 21 C -0.163 4.163 22 C -0.136 4.136 23 C -0.064 4.064 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.394 0.606 27 H 0.274 0.726 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.998 8.058 -7.385 11.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.092 5.092 2 C -0.095 4.095 3 C -0.014 4.014 4 C 0.354 3.646 5 O -0.418 6.418 6 N -0.360 5.360 7 C -0.052 4.052 8 C 0.201 3.799 9 O -0.383 6.383 10 C -0.573 4.573 11 H 0.091 0.909 12 C -0.130 4.130 13 N -0.538 5.538 14 Si 0.736 3.264 15 H -0.201 1.201 16 H -0.209 1.209 17 H -0.195 1.195 18 C -0.012 4.012 19 C -0.109 4.109 20 C -0.159 4.159 21 C -0.199 4.199 22 C -0.172 4.172 23 C -0.102 4.102 24 H 0.082 0.918 25 H 0.098 0.902 26 H 0.251 0.749 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.093 7.946 -8.304 11.902 hybrid contribution -0.729 -0.432 1.096 1.386 sum 2.364 7.514 -7.208 10.677 Atomic orbital electron populations 1.81186 1.12097 1.07753 1.08119 1.28309 0.93936 0.93674 0.93543 1.19436 0.82267 0.96208 1.03452 1.18549 0.82560 0.84004 0.79501 1.90657 1.33034 1.73979 1.44140 1.49662 1.40950 1.17583 1.27813 1.24247 0.93868 1.02376 0.84708 1.19454 0.84639 0.89040 0.86799 1.86035 1.37514 1.80950 1.33837 1.21413 1.33720 1.01544 1.00581 0.90867 1.25069 0.95113 0.95570 0.97207 1.69249 1.46442 1.21241 1.16887 0.86308 0.79647 0.80880 0.79595 1.20143 1.20879 1.19514 1.23372 1.01216 0.83430 0.93204 1.22538 0.95718 0.95853 0.96808 1.21910 0.91469 1.04714 0.97760 1.22832 1.02984 0.91269 1.02856 1.22758 0.92964 0.97796 1.03721 1.22452 0.95362 0.97513 0.94909 0.91754 0.90220 0.74907 0.91518 0.89514 0.91120 0.88109 0.88937 0.88629 0.88576 0.88364 0.88172 0.88541 0.88483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.55 18.54 42.15 0.78 -6.77 16 2 C 0.22 3.71 13.37 -20.76 -0.28 3.43 16 3 C -0.01 -0.11 1.08 -157.52 -0.17 -0.28 16 4 C 0.57 10.79 6.87 -10.98 -0.08 10.72 16 5 O -0.54 -11.17 16.61 5.56 0.09 -11.08 16 6 N -0.63 -12.82 3.64 -185.40 -0.67 -13.49 16 7 C 0.07 1.52 6.85 -8.65 -0.06 1.46 16 8 C 0.24 5.66 1.57 -91.40 -0.14 5.51 16 9 O -0.57 -14.05 13.53 -35.23 -0.48 -14.53 16 10 C -0.53 -13.16 8.69 -34.44 -0.30 -13.46 16 11 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 12 C 0.07 1.79 5.40 -17.82 -0.10 1.70 16 13 N -0.90 -22.37 11.01 55.43 0.61 -21.76 16 14 Si 0.91 19.29 29.54 -169.99 -5.02 14.27 16 15 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 18 C 0.11 2.31 8.03 -8.52 -0.07 2.24 16 19 C -0.07 -0.93 7.21 -26.14 -0.19 -1.12 16 20 C -0.16 -1.91 2.77 -154.80 -0.43 -2.34 16 21 C -0.16 -1.57 10.53 -26.95 -0.28 -1.85 16 22 C -0.14 -1.60 10.53 -26.95 -0.28 -1.88 16 23 C -0.06 -0.79 7.01 -26.13 -0.18 -0.97 16 24 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 25 H 0.08 1.73 8.10 -51.93 -0.42 1.31 16 26 H 0.39 9.90 6.33 45.56 0.29 10.19 16 27 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 28 H 0.09 1.70 8.10 -51.93 -0.42 1.28 16 29 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.10 1.14 8.08 -51.92 -0.42 0.72 16 31 H 0.09 1.37 8.09 -51.93 -0.42 0.95 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.10 1.25 7.40 -51.93 -0.38 0.87 16 37 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 LS Contribution 323.25 15.07 4.87 4.87 Total: -1.00 -27.32 323.25 -6.65 -33.98 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -4.28 Total: 11.36 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -2.56 Total: 3.16 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.72 Total: -42.02 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.38 Total: -25.61 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.32 -6.65 -33.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348613452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.250 kcal (2) G-P(sol) polarization free energy of solvation -27.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds