Wall clock time and date at job start Mon Mar 30 2020 01:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.50696 * 112.83177 * 352.72809 * 3 2 1 5 5 O 1.21283 * 120.00395 * 129.66682 * 4 3 2 6 6 N 1.34782 * 119.99649 * 309.66561 * 4 3 2 7 7 C 1.47062 * 136.06172 * 359.62781 * 6 4 3 8 8 C 1.53232 * 88.08691 * 207.20439 * 7 6 4 9 9 O 1.42902 * 114.01473 * 87.71453 * 8 7 6 10 10 C 1.50698 * 114.32967 * 220.46838 * 8 7 6 11 11 H 1.08001 * 119.99539 * 93.75831 * 10 8 7 12 12 C 1.37872 * 120.00070 * 273.76070 * 10 8 7 13 13 N 1.31518 * 120.00189 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 120.00102 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.46982 * 89.99849 * 14 12 10 16 16 H 1.48496 * 109.47526 * 210.00207 * 14 12 10 17 17 H 1.48503 * 109.47168 * 330.00428 * 14 12 10 18 18 C 1.47070 * 136.05311 * 180.02562 * 6 4 3 19 19 C 1.53884 * 113.58979 * 221.50346 * 3 2 1 20 20 C 1.53249 * 86.88821 * 220.42955 * 19 3 2 21 21 C 1.52458 * 128.58825 * 165.10900 * 20 19 3 22 22 C 1.52457 * 128.58888 * 245.05872 * 20 19 3 23 23 C 1.53262 * 87.69045 * 25.08550 * 20 19 3 24 24 H 1.08998 * 113.46501 * 321.94451 * 7 6 4 25 25 H 1.09005 * 113.46658 * 92.37231 * 7 6 4 26 26 H 0.96697 * 114.00252 * 86.39109 * 9 8 7 27 27 H 0.96999 * 119.99931 * 179.97438 * 13 12 10 28 28 H 1.08994 * 113.46746 * 267.62258 * 18 6 4 29 29 H 1.09003 * 113.46845 * 38.06422 * 18 6 4 30 30 H 1.09008 * 113.64544 * 334.93323 * 19 3 2 31 31 H 1.09005 * 113.64818 * 105.92734 * 19 3 2 32 32 H 1.09003 * 117.51257 * 225.05287 * 21 20 19 33 33 H 1.09002 * 117.51166 * 10.15137 * 21 20 19 34 34 H 1.08999 * 117.50907 * 349.84586 * 22 20 19 35 35 H 1.08997 * 117.51520 * 134.94588 * 22 20 19 36 36 H 1.09004 * 113.64314 * 220.42289 * 23 20 19 37 37 H 1.08997 * 113.64914 * 89.41836 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1933 -1.3768 0.1758 5 8 4.0467 -1.7752 -0.5884 6 7 2.7684 -2.1661 1.1823 7 6 1.7960 -2.0517 2.2796 8 6 2.6452 -3.0542 3.0682 9 8 3.6902 -2.4538 3.8361 10 6 1.8464 -4.0740 3.8382 11 1 1.6266 -5.0342 3.3952 12 6 1.3963 -3.7814 5.1081 13 7 1.6644 -2.6124 5.6477 14 14 0.4056 -5.0454 6.0623 15 1 1.3259 -5.9004 6.8542 16 1 -0.5342 -4.3495 6.9775 17 1 -0.3624 -5.8912 5.1136 18 6 3.0785 -3.5182 1.6709 19 6 3.2233 1.0571 0.9345 20 6 4.2574 1.3090 -0.1681 21 6 5.2204 2.4813 -0.3188 22 6 5.7612 1.0605 -0.1362 23 6 3.2234 0.7864 -1.1714 24 1 1.7660 -1.0602 2.7314 25 1 0.8058 -2.4286 2.0231 26 1 3.4142 -2.1625 4.7158 27 1 1.3474 -2.4064 6.5410 28 1 2.4338 -4.2900 1.2505 29 1 4.1368 -3.7710 1.6063 30 1 2.5690 1.9083 1.1231 31 1 3.6496 0.6390 1.8465 32 1 5.3137 2.9324 -1.3067 33 1 5.3136 3.1677 0.5228 34 1 6.2102 0.8124 0.8256 35 1 6.2103 0.5772 -1.0038 36 1 3.6498 0.1511 -1.9478 37 1 2.5692 1.5622 -1.5691 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348613452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:16 Heat of formation + Delta-G solvation = 22.331192 kcal Electronic energy + Delta-G solvation = -21727.760951 eV Core-core repulsion = 18472.996530 eV Total energy + Delta-G solvation = -3254.764421 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.16224 -40.54488 -38.60538 -37.58950 -35.91145 -34.66391 -34.14096 -30.73789 -27.77100 -27.04572 -26.92968 -25.84615 -23.26446 -22.49170 -20.78343 -19.59988 -19.36827 -18.65590 -17.50013 -17.21230 -16.93755 -16.38716 -16.11671 -15.94284 -15.24398 -15.08878 -14.83674 -14.67238 -14.57996 -14.21596 -13.85865 -13.68319 -13.45691 -13.37957 -13.21905 -12.83125 -12.79933 -12.41831 -12.25572 -12.25027 -12.18937 -11.49224 -11.42578 -11.15831 -11.04656 -10.70489 -10.57571 -10.28963 -9.68167 -8.30805 -6.47471 1.16748 1.42326 1.44957 1.47683 1.53497 1.57587 1.87370 2.38169 2.56628 2.90636 2.97419 3.26268 3.32030 3.38225 3.46700 3.70742 3.85700 4.07385 4.16531 4.38999 4.57082 4.59228 4.65417 4.71061 4.78072 4.79890 4.84350 4.89649 4.94549 5.01249 5.08538 5.17564 5.20641 5.37295 5.70286 5.86942 6.23482 6.58243 6.71894 6.96916 7.26606 7.46856 8.75423 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.025664 B = 0.005143 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.781644 B = 5443.373642 C = 5656.612074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.239 3.761 3 C -0.014 4.014 4 C 0.565 3.435 5 O -0.557 6.557 6 N -0.632 5.632 7 C 0.088 3.912 8 C 0.225 3.775 9 O -0.579 6.579 10 C -0.555 4.555 11 H 0.074 0.926 12 C 0.034 3.966 13 N -0.916 5.916 14 Si 0.968 3.032 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.268 1.268 18 C 0.111 3.889 19 C -0.066 4.066 20 C -0.170 4.170 21 C -0.129 4.129 22 C -0.156 4.156 23 C -0.051 4.051 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.390 0.610 27 H 0.277 0.723 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.125 0.875 31 H 0.071 0.929 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.795 9.217 -8.034 12.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.079 4.079 3 C -0.021 4.021 4 C 0.352 3.648 5 O -0.436 6.436 6 N -0.365 5.365 7 C -0.036 4.036 8 C 0.183 3.817 9 O -0.392 6.392 10 C -0.592 4.592 11 H 0.092 0.908 12 C -0.167 4.167 13 N -0.557 5.557 14 Si 0.793 3.207 15 H -0.200 1.200 16 H -0.207 1.207 17 H -0.192 1.192 18 C -0.011 4.011 19 C -0.104 4.104 20 C -0.170 4.170 21 C -0.165 4.165 22 C -0.193 4.193 23 C -0.090 4.090 24 H 0.078 0.922 25 H 0.094 0.906 26 H 0.245 0.755 27 H 0.087 0.913 28 H 0.119 0.881 29 H 0.084 0.916 30 H 0.143 0.857 31 H 0.090 0.910 32 H 0.135 0.865 33 H 0.128 0.872 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.899 9.113 -8.973 13.113 hybrid contribution -0.596 -0.813 1.289 1.636 sum 2.303 8.300 -7.684 11.543 Atomic orbital electron populations 1.81201 1.12911 1.08545 1.09336 1.28473 0.94007 0.92881 0.92562 1.19574 0.81401 0.94570 1.06524 1.19153 0.82080 0.84988 0.78531 1.90642 1.33797 1.74663 1.44530 1.49688 1.40918 1.17525 1.28325 1.23911 0.93480 1.01470 0.84691 1.19667 0.84923 0.89657 0.87426 1.86022 1.38336 1.81153 1.33718 1.21667 1.34268 1.01997 1.01315 0.90759 1.25742 0.95917 0.97118 0.97909 1.69312 1.46871 1.22295 1.17174 0.85396 0.78293 0.78779 0.78259 1.19986 1.20712 1.19234 1.23332 1.01195 0.84383 0.92234 1.22594 0.96336 0.95599 0.95903 1.21883 0.91253 1.07144 0.96730 1.22943 0.99018 0.90005 1.04560 1.22801 0.92965 1.00383 1.03156 1.22523 0.95389 0.97400 0.93656 0.92234 0.90617 0.75452 0.91294 0.88114 0.91619 0.85686 0.90991 0.86459 0.87222 0.89489 0.88457 0.89180 0.85522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -15.69 18.54 20.01 0.37 -15.32 16 2 C 0.24 7.62 13.37 89.44 1.20 8.81 16 3 C -0.01 -0.41 1.08 -54.14 -0.06 -0.47 16 4 C 0.56 21.27 6.87 87.65 0.60 21.87 16 5 O -0.56 -22.91 16.61 -3.04 -0.05 -22.96 16 6 N -0.63 -25.85 3.64 -859.34 -3.13 -28.98 16 7 C 0.09 3.79 6.85 83.09 0.57 4.36 16 8 C 0.22 10.59 1.57 -11.30 -0.02 10.57 16 9 O -0.58 -29.09 13.53 -148.98 -2.02 -31.11 16 10 C -0.55 -27.38 8.69 25.60 0.22 -27.16 16 11 H 0.07 3.56 7.81 -2.91 -0.02 3.53 16 12 C 0.03 1.65 5.40 84.65 0.46 2.11 16 13 N -0.92 -45.72 11.01 21.45 0.24 -45.48 16 14 Si 0.97 39.21 29.54 68.60 2.03 41.24 16 15 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 16 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 17 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 18 C 0.11 4.70 8.03 83.17 0.67 5.37 16 19 C -0.07 -1.64 7.21 30.98 0.22 -1.42 16 20 C -0.17 -3.72 2.77 -52.37 -0.14 -3.86 16 21 C -0.13 -2.04 10.53 30.45 0.32 -1.72 16 22 C -0.16 -3.47 10.53 30.45 0.32 -3.15 16 23 C -0.05 -1.15 7.01 30.98 0.22 -0.93 16 24 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 25 H 0.08 3.31 8.10 -2.38 -0.02 3.29 16 26 H 0.39 19.98 6.33 -74.06 -0.47 19.52 16 27 H 0.28 13.10 8.31 -92.71 -0.77 12.33 16 28 H 0.10 3.93 8.10 -2.39 -0.02 3.91 16 29 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.13 2.50 8.08 -2.38 -0.02 2.48 16 31 H 0.07 2.11 8.09 -2.38 -0.02 2.09 16 32 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.09 2.17 7.40 -2.39 -0.02 2.15 16 37 H 0.13 2.09 8.08 -2.39 -0.02 2.07 16 Total: -1.00 -57.81 323.25 2.64 -55.17 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: 0.63 Total: 33.06 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 4.58 Total: 14.38 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -2.52 Total: -89.78 kcal Atomic # 8 Polarization: -52.00 SS G_CDS: -2.07 Total: -54.07 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Total: -57.81 2.64 -55.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348613452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.499 kcal (2) G-P(sol) polarization free energy of solvation -57.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds