Wall clock time and date at job start Mon Mar 30 2020 02:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00245 * 2 1 4 4 H 1.48502 * 109.46856 * 355.30692 * 3 2 1 5 5 H 1.48492 * 109.47222 * 115.31138 * 3 2 1 6 6 H 1.48506 * 109.46692 * 235.31134 * 3 2 1 7 7 C 1.38813 * 119.99700 * 180.27031 * 2 1 3 8 8 H 1.07998 * 120.00084 * 352.38585 * 7 2 1 9 9 N 1.36935 * 120.00005 * 172.39403 * 7 2 1 10 10 C 1.47066 * 136.05943 * 6.53411 * 9 7 2 11 11 C 1.53745 * 87.88938 * 152.96737 * 10 9 7 12 12 O 1.42908 * 114.08428 * 139.77917 * 11 10 9 13 13 C 1.53000 * 114.39993 * 272.67796 * 11 10 9 14 14 N 1.46503 * 109.46955 * 278.58784 * 13 11 10 15 15 C 1.34779 * 119.99786 * 179.97438 * 14 13 11 16 16 O 1.21553 * 119.99801 * 0.02562 * 15 14 13 17 17 C 1.47843 * 119.99783 * 179.97438 * 15 14 13 18 18 C 1.39580 * 120.14691 * 359.73195 * 17 15 14 19 19 C 1.37949 * 119.85431 * 179.78773 * 18 17 15 20 20 C 1.38361 * 120.14810 * 0.48283 * 19 18 17 21 21 C 1.38360 * 120.28998 * 359.74635 * 20 19 18 22 22 C 1.37961 * 120.14506 * 0.02562 * 21 20 19 23 23 C 1.47066 * 136.05754 * 186.91383 * 9 7 2 24 24 H 0.97000 * 120.00276 * 185.10857 * 1 2 3 25 25 H 1.09001 * 113.46890 * 267.70643 * 10 9 7 26 26 H 1.09003 * 113.46343 * 38.13625 * 10 9 7 27 27 H 0.96700 * 113.99852 * 86.56799 * 12 11 10 28 28 H 1.08998 * 109.46930 * 38.58544 * 13 11 10 29 29 H 1.08993 * 109.47267 * 158.58419 * 13 11 10 30 30 H 0.97000 * 120.00052 * 359.97438 * 14 13 11 31 31 H 1.08007 * 120.06799 * 359.97438 * 18 17 15 32 32 H 1.08008 * 119.92845 * 180.22855 * 19 18 17 33 33 H 1.07999 * 119.86039 * 179.71996 * 20 19 18 34 34 H 1.07991 * 119.93253 * 179.97438 * 21 20 19 35 35 H 1.07996 * 120.07340 * 179.97438 * 22 21 20 36 36 H 1.09001 * 113.46935 * 321.86111 * 23 9 7 37 37 H 1.09004 * 113.46453 * 92.23850 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2893 2.7441 -0.1146 5 1 3.0162 1.7471 1.2656 6 1 3.1879 1.6478 -1.1513 7 6 2.0102 -1.2022 -0.0057 8 1 1.4773 -2.1339 0.1139 9 7 3.3705 -1.2067 -0.1627 10 6 4.4320 -0.1911 -0.2312 11 6 5.4052 -1.2541 0.3043 12 8 6.6927 -1.2311 -0.3155 13 6 5.4666 -1.3432 1.8304 14 7 6.3505 -0.2945 2.3456 15 6 6.5574 -0.1793 3.6724 16 8 6.0110 -0.9457 4.4415 17 6 7.4498 0.8786 4.1922 18 6 8.0840 1.7561 3.3113 19 6 8.9120 2.7437 3.8032 20 6 9.1224 2.8594 5.1658 21 6 8.5006 1.9898 6.0442 22 6 7.6664 1.0006 5.5657 23 6 4.4122 -2.2290 -0.3436 24 1 -0.4850 -0.8367 0.0748 25 1 4.6585 0.1322 -1.2473 26 1 4.2790 0.6435 0.4530 27 1 7.3158 -0.6161 0.0950 28 1 4.4664 -1.2102 2.2427 29 1 5.8529 -2.3197 2.1221 30 1 6.7868 0.3168 1.7318 31 1 7.9244 1.6639 2.2471 32 1 9.4005 3.4257 3.1228 33 1 9.7751 3.6315 5.5455 34 1 8.6692 2.0850 7.1066 35 1 7.1819 0.3222 6.2523 36 1 4.2424 -3.1307 0.2449 37 1 4.6327 -2.4437 -1.3893 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500776933.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:32 Heat of formation + Delta-G solvation = 12.498948 kcal Electronic energy + Delta-G solvation = -21122.059996 eV Core-core repulsion = 17866.869217 eV Total energy + Delta-G solvation = -3255.190779 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.44145 -39.42724 -38.19378 -35.44598 -34.30302 -32.32749 -31.53844 -31.18950 -28.51129 -26.36918 -25.58184 -23.75624 -22.71785 -21.75462 -20.60247 -19.39083 -18.57279 -17.51737 -16.90995 -16.43902 -15.99096 -15.45461 -15.25961 -14.91028 -14.69522 -14.22549 -13.98527 -13.82768 -13.38613 -13.21568 -13.09203 -12.76329 -12.22315 -12.13373 -11.93627 -11.71452 -11.38419 -11.11039 -10.74699 -10.41268 -10.16376 -9.99333 -9.32889 -9.27565 -9.26726 -9.11580 -8.93280 -8.92607 -7.24470 -6.37951 -3.30418 0.62569 1.08359 2.76893 3.02493 3.34004 3.38175 3.58863 3.67820 4.20268 4.47138 4.51757 4.53425 4.64552 4.71893 4.73784 4.87067 4.94767 5.08315 5.20812 5.43709 5.51082 5.64967 5.68933 5.98582 6.03318 6.06613 6.10580 6.14866 6.19788 6.20854 6.25018 6.36820 6.56343 6.59547 6.97730 7.37183 7.70996 8.14264 8.18525 8.91394 9.42532 10.25947 11.14836 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.020215 B = 0.004949 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.779699 B = 5655.834898 C = 6062.252499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.021 4.021 3 Si 1.068 2.932 4 H -0.293 1.293 5 H -0.294 1.294 6 H -0.286 1.286 7 C -0.306 4.306 8 H 0.087 0.913 9 N -0.619 5.619 10 C 0.078 3.922 11 C 0.064 3.936 12 O -0.545 6.545 13 C 0.123 3.877 14 N -0.724 5.724 15 C 0.558 3.442 16 O -0.532 6.532 17 C -0.130 4.130 18 C -0.087 4.087 19 C -0.127 4.127 20 C -0.098 4.098 21 C -0.128 4.128 22 C -0.060 4.060 23 C 0.144 3.856 24 H 0.262 0.738 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.363 0.637 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.394 0.606 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.137 0.863 36 H 0.055 0.945 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.343 5.268 7.567 23.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.220 4.220 3 Si 0.901 3.099 4 H -0.221 1.221 5 H -0.222 1.222 6 H -0.213 1.213 7 C -0.431 4.431 8 H 0.105 0.895 9 N -0.349 5.349 10 C -0.048 4.048 11 C 0.022 3.978 12 O -0.348 6.348 13 C 0.000 4.000 14 N -0.377 5.377 15 C 0.345 3.655 16 O -0.409 6.409 17 C -0.133 4.133 18 C -0.106 4.106 19 C -0.145 4.145 20 C -0.116 4.116 21 C -0.146 4.146 22 C -0.079 4.079 23 C 0.017 3.983 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.210 0.790 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.230 0.770 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.154 0.846 36 H 0.073 0.927 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 20.160 5.866 7.673 22.354 hybrid contribution 0.610 -0.894 -0.027 1.083 sum 20.770 4.972 7.646 22.685 Atomic orbital electron populations 1.70913 1.05269 1.29621 1.51427 1.25719 0.96443 1.00898 0.98969 0.83724 0.73969 0.76159 0.76052 1.22053 1.22195 1.21315 1.20105 0.77925 0.95983 1.49116 0.89549 1.45670 1.02110 1.01680 1.85470 1.23471 0.88122 0.94028 0.99154 1.23739 0.82119 1.01296 0.90693 1.86617 1.23264 1.66130 1.58836 1.21616 0.95945 0.90600 0.91821 1.45840 1.49358 1.35287 1.07181 1.18238 0.81186 0.84032 0.82069 1.90791 1.49680 1.43836 1.56598 1.20005 1.00557 0.97990 0.94789 1.21344 0.95623 0.94296 0.99344 1.21118 0.99098 0.98530 0.95767 1.21383 0.98347 0.98361 0.93498 1.21179 0.97662 0.95597 1.00210 1.21326 0.95493 0.96871 0.94241 1.22270 0.84923 0.92835 0.98250 0.92730 0.92651 0.92996 0.79004 0.88490 0.90419 0.77039 0.85598 0.85299 0.85595 0.85303 0.84560 0.92666 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.39 13.70 55.49 0.76 -28.63 16 2 C -0.02 -0.63 5.50 -17.43 -0.10 -0.72 16 3 Si 1.07 26.73 25.13 -169.99 -4.27 22.46 16 4 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 5 H -0.29 -6.99 6.63 56.52 0.37 -6.61 16 6 H -0.29 -6.63 6.13 56.52 0.35 -6.28 16 7 C -0.31 -8.76 11.08 -15.06 -0.17 -8.93 16 8 H 0.09 2.60 8.05 -52.49 -0.42 2.18 16 9 N -0.62 -15.06 3.47 -184.61 -0.64 -15.70 16 10 C 0.08 1.62 5.12 -8.39 -0.04 1.58 16 11 C 0.06 1.09 1.74 -89.98 -0.16 0.94 16 12 O -0.55 -7.86 13.56 -35.23 -0.48 -8.33 16 13 C 0.12 2.05 5.33 -4.04 -0.02 2.03 16 14 N -0.72 -9.98 5.27 -61.25 -0.32 -10.30 16 15 C 0.56 8.46 7.77 -12.33 -0.10 8.36 16 16 O -0.53 -10.06 16.35 5.32 0.09 -9.98 16 17 C -0.13 -1.58 5.87 -104.97 -0.62 -2.20 16 18 C -0.09 -0.82 9.54 -39.19 -0.37 -1.19 16 19 C -0.13 -1.00 10.03 -39.64 -0.40 -1.40 16 20 C -0.10 -0.74 10.04 -39.49 -0.40 -1.14 16 21 C -0.13 -1.10 10.03 -39.64 -0.40 -1.50 16 22 C -0.06 -0.68 9.60 -39.18 -0.38 -1.05 16 23 C 0.14 2.87 8.10 -8.52 -0.07 2.80 16 24 H 0.26 8.18 8.73 -40.82 -0.36 7.82 16 25 H 0.06 1.15 7.71 -51.93 -0.40 0.75 16 26 H 0.05 1.10 4.65 -51.93 -0.24 0.86 16 27 H 0.36 3.61 7.50 45.56 0.34 3.95 16 28 H 0.10 1.96 7.94 -51.93 -0.41 1.55 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.39 4.14 5.28 -40.82 -0.22 3.92 16 31 H 0.13 0.89 6.41 -52.48 -0.34 0.56 16 32 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 33 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.14 1.56 7.65 -52.49 -0.40 1.16 16 36 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 309.60 15.07 4.67 4.67 Total: -1.00 -35.27 309.60 -7.27 -42.54 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -3.86 Total: 5.71 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -3.21 Total: -2.42 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.20 Total: -54.63 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.39 Total: -18.31 kcal Atomic # 14 Polarization: 26.73 SS G_CDS: -4.27 Total: 22.46 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.27 -7.27 -42.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500776933.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.035 kcal (2) G-P(sol) polarization free energy of solvation -35.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds