Wall clock time and date at job start Mon Mar 30 2020 02:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00245 * 2 1 4 4 H 1.48502 * 109.46856 * 355.30692 * 3 2 1 5 5 H 1.48492 * 109.47222 * 115.31138 * 3 2 1 6 6 H 1.48506 * 109.46692 * 235.31134 * 3 2 1 7 7 C 1.38813 * 119.99700 * 180.27031 * 2 1 3 8 8 H 1.07998 * 120.00084 * 352.38585 * 7 2 1 9 9 N 1.36935 * 120.00005 * 172.39403 * 7 2 1 10 10 C 1.47066 * 136.05943 * 6.53411 * 9 7 2 11 11 C 1.53745 * 87.88938 * 152.96737 * 10 9 7 12 12 O 1.42908 * 114.08428 * 139.77917 * 11 10 9 13 13 C 1.53000 * 114.39993 * 272.67796 * 11 10 9 14 14 N 1.46503 * 109.46955 * 278.58784 * 13 11 10 15 15 C 1.34779 * 119.99786 * 179.97438 * 14 13 11 16 16 O 1.21553 * 119.99801 * 0.02562 * 15 14 13 17 17 C 1.47843 * 119.99783 * 179.97438 * 15 14 13 18 18 C 1.39580 * 120.14691 * 359.73195 * 17 15 14 19 19 C 1.37949 * 119.85431 * 179.78773 * 18 17 15 20 20 C 1.38361 * 120.14810 * 0.48283 * 19 18 17 21 21 C 1.38360 * 120.28998 * 359.74635 * 20 19 18 22 22 C 1.37961 * 120.14506 * 0.02562 * 21 20 19 23 23 C 1.47066 * 136.05754 * 186.91383 * 9 7 2 24 24 H 0.97000 * 120.00276 * 185.10857 * 1 2 3 25 25 H 1.09001 * 113.46890 * 267.70643 * 10 9 7 26 26 H 1.09003 * 113.46343 * 38.13625 * 10 9 7 27 27 H 0.96700 * 113.99852 * 86.56799 * 12 11 10 28 28 H 1.08998 * 109.46930 * 38.58544 * 13 11 10 29 29 H 1.08993 * 109.47267 * 158.58419 * 13 11 10 30 30 H 0.97000 * 120.00052 * 359.97438 * 14 13 11 31 31 H 1.08007 * 120.06799 * 359.97438 * 18 17 15 32 32 H 1.08008 * 119.92845 * 180.22855 * 19 18 17 33 33 H 1.07999 * 119.86039 * 179.71996 * 20 19 18 34 34 H 1.07991 * 119.93253 * 179.97438 * 21 20 19 35 35 H 1.07996 * 120.07340 * 179.97438 * 22 21 20 36 36 H 1.09001 * 113.46935 * 321.86111 * 23 9 7 37 37 H 1.09004 * 113.46453 * 92.23850 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2893 2.7441 -0.1146 5 1 3.0162 1.7471 1.2656 6 1 3.1879 1.6478 -1.1513 7 6 2.0102 -1.2022 -0.0057 8 1 1.4773 -2.1339 0.1139 9 7 3.3705 -1.2067 -0.1627 10 6 4.4320 -0.1911 -0.2312 11 6 5.4052 -1.2541 0.3043 12 8 6.6927 -1.2311 -0.3155 13 6 5.4666 -1.3432 1.8304 14 7 6.3505 -0.2945 2.3456 15 6 6.5574 -0.1793 3.6724 16 8 6.0110 -0.9457 4.4415 17 6 7.4498 0.8786 4.1922 18 6 8.0840 1.7561 3.3113 19 6 8.9120 2.7437 3.8032 20 6 9.1224 2.8594 5.1658 21 6 8.5006 1.9898 6.0442 22 6 7.6664 1.0006 5.5657 23 6 4.4122 -2.2290 -0.3436 24 1 -0.4850 -0.8367 0.0748 25 1 4.6585 0.1322 -1.2473 26 1 4.2790 0.6435 0.4530 27 1 7.3158 -0.6161 0.0950 28 1 4.4664 -1.2102 2.2427 29 1 5.8529 -2.3197 2.1221 30 1 6.7868 0.3168 1.7318 31 1 7.9244 1.6639 2.2471 32 1 9.4005 3.4257 3.1228 33 1 9.7751 3.6315 5.5455 34 1 8.6692 2.0850 7.1066 35 1 7.1819 0.3222 6.2523 36 1 4.2424 -3.1307 0.2449 37 1 4.6327 -2.4437 -1.3893 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500776933.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:31 Heat of formation + Delta-G solvation = -15.989427 kcal Electronic energy + Delta-G solvation = -21123.295345 eV Core-core repulsion = 17866.869217 eV Total energy + Delta-G solvation = -3256.426128 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.64317 -40.70919 -39.15489 -36.92239 -35.53045 -34.46202 -32.37632 -31.86547 -30.18051 -27.93522 -27.22515 -24.74923 -23.67379 -23.25182 -21.69903 -20.97843 -19.69055 -19.47509 -18.14954 -17.49658 -17.29881 -16.63229 -16.51907 -16.21432 -15.64756 -15.56512 -15.38262 -15.13004 -14.77841 -14.60106 -14.24857 -13.85134 -13.71538 -13.50975 -13.39049 -12.77278 -12.61185 -12.54958 -12.14276 -12.01533 -11.84189 -11.41452 -11.17575 -11.05842 -10.66330 -10.38732 -9.94347 -9.89902 -9.28810 -8.71034 -5.54223 -0.15581 0.42662 1.31923 1.43654 1.62449 1.77670 1.89166 2.49327 2.72133 2.90278 3.03836 3.17984 3.26045 3.59762 3.62122 3.91747 4.03212 4.17317 4.26339 4.41312 4.47704 4.53189 4.56222 4.61280 4.67614 4.72342 4.86586 5.03173 5.07016 5.10614 5.13441 5.34708 5.45621 5.51921 5.89260 5.96008 6.31741 6.63497 6.66611 7.03569 7.24961 8.16877 8.84682 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.020215 B = 0.004949 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.779699 B = 5655.834898 C = 6062.252499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.082 4.082 3 Si 1.106 2.894 4 H -0.303 1.303 5 H -0.277 1.277 6 H -0.252 1.252 7 C -0.291 4.291 8 H 0.054 0.946 9 N -0.650 5.650 10 C 0.072 3.928 11 C 0.104 3.896 12 O -0.537 6.537 13 C 0.133 3.867 14 N -0.711 5.711 15 C 0.554 3.446 16 O -0.582 6.582 17 C -0.157 4.157 18 C -0.087 4.087 19 C -0.126 4.126 20 C -0.089 4.089 21 C -0.131 4.131 22 C -0.082 4.082 23 C 0.135 3.865 24 H 0.247 0.753 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.389 0.611 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.413 0.587 31 H 0.149 0.851 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.150 0.850 35 H 0.118 0.882 36 H 0.059 0.941 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.571 7.611 7.084 27.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.274 4.274 3 Si 0.932 3.068 4 H -0.231 1.231 5 H -0.204 1.204 6 H -0.177 1.177 7 C -0.419 4.419 8 H 0.072 0.928 9 N -0.381 5.381 10 C -0.053 4.053 11 C 0.061 3.939 12 O -0.343 6.343 13 C 0.008 3.992 14 N -0.365 5.365 15 C 0.344 3.656 16 O -0.463 6.463 17 C -0.160 4.160 18 C -0.106 4.106 19 C -0.143 4.143 20 C -0.107 4.107 21 C -0.149 4.149 22 C -0.101 4.101 23 C 0.009 3.991 24 H 0.057 0.943 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.239 0.761 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.252 0.748 31 H 0.167 0.833 32 H 0.179 0.821 33 H 0.177 0.823 34 H 0.168 0.832 35 H 0.136 0.864 36 H 0.077 0.923 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 24.483 8.205 7.160 26.796 hybrid contribution -0.574 -1.693 0.158 1.795 sum 23.909 6.512 7.318 25.838 Atomic orbital electron populations 1.71020 1.06644 1.28784 1.54853 1.27084 0.96479 1.04594 0.99257 0.83307 0.73566 0.71945 0.77989 1.23131 1.20400 1.17680 1.19952 0.80440 0.94673 1.46796 0.92807 1.45639 1.01487 1.05014 1.85949 1.23685 0.87598 0.94185 0.99862 1.22900 0.82824 0.97939 0.90201 1.86583 1.22088 1.67005 1.58651 1.21301 0.94584 0.91882 0.91423 1.45641 1.48642 1.34913 1.07298 1.18839 0.80840 0.84065 0.81896 1.90759 1.51828 1.45941 1.57790 1.19869 1.01926 0.98613 0.95601 1.21625 0.95101 0.93741 1.00106 1.21550 0.98158 0.98111 0.96508 1.21844 0.97426 0.98033 0.93419 1.21449 0.96860 0.94848 1.01731 1.21382 0.96805 0.97954 0.94002 1.22480 0.84441 0.92940 0.99239 0.94335 0.91493 0.93069 0.76069 0.92499 0.89893 0.74849 0.83333 0.82083 0.82348 0.83242 0.86384 0.92298 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.46 13.70 21.65 0.30 -63.16 16 2 C -0.08 -4.98 5.50 84.86 0.47 -4.51 16 3 Si 1.11 53.44 25.13 68.60 1.72 55.17 16 4 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 5 H -0.28 -12.47 6.63 99.48 0.66 -11.81 16 6 H -0.25 -10.67 6.13 99.48 0.61 -10.06 16 7 C -0.29 -17.17 11.08 84.03 0.93 -16.24 16 8 H 0.05 3.42 8.05 -2.91 -0.02 3.40 16 9 N -0.65 -31.35 3.47 -738.47 -2.56 -33.91 16 10 C 0.07 2.78 5.12 83.26 0.43 3.20 16 11 C 0.10 3.30 1.74 -10.38 -0.02 3.28 16 12 O -0.54 -13.06 13.56 -148.98 -2.02 -15.08 16 13 C 0.13 4.26 5.33 86.38 0.46 4.72 16 14 N -0.71 -18.27 5.27 -465.98 -2.46 -20.72 16 15 C 0.55 16.62 7.77 86.79 0.67 17.29 16 16 O -0.58 -22.85 16.35 -3.88 -0.06 -22.91 16 17 C -0.16 -3.60 5.87 -20.09 -0.12 -3.72 16 18 C -0.09 -1.33 9.54 22.53 0.21 -1.11 16 19 C -0.13 -1.38 10.03 22.23 0.22 -1.16 16 20 C -0.09 -0.97 10.04 22.33 0.22 -0.75 16 21 C -0.13 -1.94 10.03 22.23 0.22 -1.71 16 22 C -0.08 -1.80 9.60 22.53 0.22 -1.59 16 23 C 0.14 5.18 8.10 83.17 0.67 5.86 16 24 H 0.25 16.29 8.73 -92.71 -0.81 15.48 16 25 H 0.07 2.49 7.71 -2.39 -0.02 2.48 16 26 H 0.05 2.01 4.65 -2.39 -0.01 2.00 16 27 H 0.39 5.62 7.50 -74.06 -0.56 5.06 16 28 H 0.06 2.34 7.94 -2.39 -0.02 2.32 16 29 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.41 7.18 5.28 -92.71 -0.49 6.69 16 31 H 0.15 1.42 6.41 -2.91 -0.02 1.40 16 32 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 33 H 0.16 0.71 8.06 -2.91 -0.02 0.68 16 34 H 0.15 1.48 8.06 -2.92 -0.02 1.46 16 35 H 0.12 2.89 7.65 -2.91 -0.02 2.87 16 36 H 0.06 2.20 8.12 -2.39 -0.02 2.18 16 37 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -80.97 309.60 -0.60 -81.57 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -0.12 Total: 15.49 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 4.60 Total: 3.56 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -4.72 Total: -117.80 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -2.08 Total: -37.99 kcal Atomic # 14 Polarization: 53.44 SS G_CDS: 1.72 Total: 55.17 kcal Total: -80.97 -0.60 -81.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500776933.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.585 kcal (2) G-P(sol) polarization free energy of solvation -80.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds