Wall clock time and date at job start Mon Mar 30 2020 02:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99523 * 2 1 4 4 H 1.48504 * 109.46862 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47855 * 300.00035 * 3 2 1 6 6 H 1.48495 * 109.47271 * 60.00779 * 3 2 1 7 7 C 1.37875 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99962 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99675 * 359.97438 * 7 2 1 10 10 N 1.46508 * 109.46941 * 180.02562 * 9 7 2 11 11 C 1.34767 * 120.00193 * 180.02562 * 10 9 7 12 12 O 1.21589 * 120.00002 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00177 * 179.97438 * 11 10 9 14 14 C 1.47067 * 136.05400 * 359.63301 * 13 11 10 15 15 C 1.53760 * 87.88556 * 152.95929 * 14 13 11 16 16 O 1.42898 * 114.26594 * 139.78986 * 15 14 13 17 17 C 1.35899 * 117.00026 * 108.20646 * 16 15 14 18 18 C 1.38738 * 120.05467 * 173.77762 * 17 16 15 19 19 C 1.38147 * 119.94027 * 179.74196 * 18 17 16 20 20 C 1.38267 * 120.05756 * 0.50784 * 19 18 17 21 21 C 1.38267 * 120.10858 * 359.76300 * 20 19 18 22 22 C 1.38136 * 120.05702 * 359.97438 * 21 20 19 23 23 C 1.47064 * 136.05685 * 179.97438 * 13 11 10 24 24 H 0.96998 * 120.00088 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47072 * 60.01110 * 9 7 2 26 26 H 1.08998 * 109.47951 * 300.00296 * 9 7 2 27 27 H 0.97006 * 119.99631 * 0.02562 * 10 9 7 28 28 H 1.08999 * 113.46423 * 267.68959 * 14 13 11 29 29 H 1.08996 * 113.47232 * 38.13487 * 14 13 11 30 30 H 1.08994 * 114.39812 * 272.67260 * 15 14 13 31 31 H 1.07997 * 120.02840 * 359.97438 * 18 17 16 32 32 H 1.08000 * 119.97276 * 180.27086 * 19 18 17 33 33 H 1.07997 * 119.94395 * 179.74739 * 20 19 18 34 34 H 1.08005 * 119.96905 * 179.97438 * 21 20 19 35 35 H 1.08006 * 120.02854 * 179.97438 * 22 21 20 36 36 H 1.08997 * 113.47092 * 321.86253 * 23 13 11 37 37 H 1.08996 * 113.46882 * 92.31211 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7540 -4.8833 -0.0011 12 8 0.5585 -5.1055 -0.0020 13 7 2.6298 -5.9077 -0.0016 14 6 4.0936 -6.0493 -0.0083 15 6 3.9088 -7.4035 0.6962 16 8 4.7843 -8.4322 0.2301 17 6 5.7865 -8.8144 1.0645 18 6 6.5932 -9.8934 0.7330 19 6 7.6148 -10.2766 1.5804 20 6 7.8270 -9.5923 2.7630 21 6 7.0208 -8.5201 3.0983 22 6 6.0014 -8.1297 2.2518 23 6 2.5422 -7.3757 -0.0018 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6247 -2.5572 0.8896 27 1 3.1568 -3.4354 -0.0002 28 1 4.5168 -6.1350 -1.0091 29 1 4.6045 -5.3061 0.6038 30 1 3.8566 -7.3421 1.7832 31 1 6.4250 -10.4310 -0.1884 32 1 8.2458 -11.1137 1.3208 33 1 8.6235 -9.8959 3.4261 34 1 7.1883 -7.9875 4.0228 35 1 5.3717 -7.2923 2.5143 36 1 1.7316 -7.7624 0.6159 37 1 2.5562 -7.8113 -1.0008 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527651637.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:08 Heat of formation + Delta-G solvation = 5.885486 kcal Electronic energy + Delta-G solvation = -20128.630271 eV Core-core repulsion = 16873.152710 eV Total energy + Delta-G solvation = -3255.477560 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.91383 -39.58149 -38.01478 -36.57460 -34.16455 -32.34001 -31.31765 -30.28999 -28.99440 -26.83379 -26.03094 -23.83994 -22.78955 -22.31967 -21.03266 -19.31732 -18.81107 -17.92183 -16.58065 -16.12349 -16.08565 -15.87873 -15.13198 -15.09450 -14.71876 -14.52167 -13.82177 -13.76780 -13.56625 -13.15732 -12.91069 -12.78691 -12.33565 -12.05913 -11.93425 -11.86589 -11.71235 -11.05221 -10.94552 -10.92169 -10.61170 -10.32603 -9.54103 -9.38085 -9.29232 -8.77796 -8.60210 -8.46582 -7.81194 -6.17500 -4.24302 1.05174 1.15827 2.53427 3.16221 3.22958 3.30226 3.33430 3.49634 3.85716 4.01411 4.28392 4.41938 4.54449 4.62509 4.69166 4.89435 4.96089 5.09780 5.12578 5.18734 5.29605 5.37872 5.39386 5.53125 5.69279 5.73357 5.81892 6.04816 6.13033 6.25164 6.49670 7.14570 7.18244 7.44977 7.52919 7.57609 7.87666 8.00778 8.72158 8.84141 9.25889 9.44111 10.92793 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.026461 B = 0.003096 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.902698 B = 9041.924841 C = 9811.616755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.723 5.723 11 C 0.730 3.270 12 O -0.590 6.590 13 N -0.667 5.667 14 C 0.086 3.914 15 C 0.040 3.960 16 O -0.296 6.296 17 C 0.131 3.869 18 C -0.153 4.153 19 C -0.083 4.083 20 C -0.161 4.161 21 C -0.079 4.079 22 C -0.208 4.208 23 C 0.134 3.866 24 H 0.266 0.734 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.387 0.613 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.086 0.914 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.283 -19.231 3.880 25.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.146 3.854 10 N -0.374 5.374 11 C 0.432 3.568 12 O -0.469 6.469 13 N -0.411 5.411 14 C -0.038 4.038 15 C -0.018 4.018 16 O -0.208 6.208 17 C 0.086 3.914 18 C -0.172 4.172 19 C -0.101 4.101 20 C -0.179 4.179 21 C -0.098 4.098 22 C -0.226 4.226 23 C 0.010 3.990 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.219 0.781 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.134 0.866 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.149 0.851 36 H 0.104 0.896 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.956 -19.069 3.680 24.512 hybrid contribution 0.903 1.202 0.108 1.508 sum 15.859 -17.866 3.788 24.188 Atomic orbital electron populations 1.69991 1.06092 1.27227 1.48927 1.24950 0.94930 0.99434 0.94720 0.86341 0.79788 0.82888 0.77765 1.19653 1.20772 1.20775 1.21239 0.93296 0.90324 1.53153 0.91893 1.19052 0.87728 0.80897 0.97766 1.45698 1.10998 1.03864 1.76867 1.15366 0.83500 0.79815 0.78076 1.90900 1.13327 1.83477 1.59148 1.48296 1.06460 1.05854 1.80527 1.23447 0.83431 0.95588 1.01372 1.24504 0.90561 0.86883 0.99812 1.86120 1.39079 1.53655 1.41976 1.19050 0.88893 0.93801 0.89638 1.20475 0.97287 0.97373 1.02037 1.20976 0.96341 0.99036 0.93730 1.21082 1.01267 0.97627 0.97970 1.20989 0.93934 0.96070 0.98760 1.21354 1.02165 1.03222 0.95875 1.22759 0.94650 0.80539 1.01074 0.92462 0.95574 0.95587 0.78098 0.89169 0.90062 0.86594 0.85167 0.85453 0.86001 0.85739 0.85094 0.89553 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.19 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.27 7.21 5.43 -5.19 -0.03 7.19 16 10 N -0.72 -15.99 5.55 -66.41 -0.37 -16.35 16 11 C 0.73 15.77 8.79 -86.93 -0.76 15.01 16 12 O -0.59 -15.31 17.12 5.29 0.09 -15.22 16 13 N -0.67 -10.67 3.69 -190.88 -0.70 -11.37 16 14 C 0.09 1.00 8.14 -8.36 -0.07 0.93 16 15 C 0.04 0.42 4.04 -26.09 -0.11 0.31 16 16 O -0.30 -3.15 10.19 -19.42 -0.20 -3.35 16 17 C 0.13 1.33 6.68 -39.21 -0.26 1.06 16 18 C -0.15 -1.36 9.99 -39.43 -0.39 -1.76 16 19 C -0.08 -0.63 10.04 -39.60 -0.40 -1.02 16 20 C -0.16 -1.22 10.04 -39.56 -0.40 -1.62 16 21 C -0.08 -0.65 10.04 -39.61 -0.40 -1.05 16 22 C -0.21 -1.93 9.02 -39.44 -0.36 -2.28 16 23 C 0.13 1.68 8.45 -8.51 -0.07 1.61 16 24 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.39 7.44 8.04 -40.82 -0.33 7.11 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.12 1.10 5.99 -51.93 -0.31 0.79 16 31 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 35 H 0.13 1.11 5.92 -52.48 -0.31 0.80 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 323.03 15.07 4.87 4.87 Total: -1.00 -33.65 323.03 -8.97 -42.62 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.71 Total: 3.50 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -3.66 Total: 4.89 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.34 Total: -53.18 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.11 Total: -18.57 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.65 -8.97 -42.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527651637.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.502 kcal (2) G-P(sol) polarization free energy of solvation -33.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds