Wall clock time and date at job start Mon Mar 30 2020 02:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99523 * 2 1 4 4 H 1.48504 * 109.46862 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47855 * 300.00035 * 3 2 1 6 6 H 1.48495 * 109.47271 * 60.00779 * 3 2 1 7 7 C 1.37875 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99962 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99675 * 359.97438 * 7 2 1 10 10 N 1.46508 * 109.46941 * 180.02562 * 9 7 2 11 11 C 1.34767 * 120.00193 * 180.02562 * 10 9 7 12 12 O 1.21589 * 120.00002 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00177 * 179.97438 * 11 10 9 14 14 C 1.47067 * 136.05400 * 359.63301 * 13 11 10 15 15 C 1.53760 * 87.88556 * 152.95929 * 14 13 11 16 16 O 1.42898 * 114.26594 * 139.78986 * 15 14 13 17 17 C 1.35899 * 117.00026 * 108.20646 * 16 15 14 18 18 C 1.38738 * 120.05467 * 173.77762 * 17 16 15 19 19 C 1.38147 * 119.94027 * 179.74196 * 18 17 16 20 20 C 1.38267 * 120.05756 * 0.50784 * 19 18 17 21 21 C 1.38267 * 120.10858 * 359.76300 * 20 19 18 22 22 C 1.38136 * 120.05702 * 359.97438 * 21 20 19 23 23 C 1.47064 * 136.05685 * 179.97438 * 13 11 10 24 24 H 0.96998 * 120.00088 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47072 * 60.01110 * 9 7 2 26 26 H 1.08998 * 109.47951 * 300.00296 * 9 7 2 27 27 H 0.97006 * 119.99631 * 0.02562 * 10 9 7 28 28 H 1.08999 * 113.46423 * 267.68959 * 14 13 11 29 29 H 1.08996 * 113.47232 * 38.13487 * 14 13 11 30 30 H 1.08994 * 114.39812 * 272.67260 * 15 14 13 31 31 H 1.07997 * 120.02840 * 359.97438 * 18 17 16 32 32 H 1.08000 * 119.97276 * 180.27086 * 19 18 17 33 33 H 1.07997 * 119.94395 * 179.74739 * 20 19 18 34 34 H 1.08005 * 119.96905 * 179.97438 * 21 20 19 35 35 H 1.08006 * 120.02854 * 179.97438 * 22 21 20 36 36 H 1.08997 * 113.47092 * 321.86253 * 23 13 11 37 37 H 1.08996 * 113.46882 * 92.31211 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7540 -4.8833 -0.0011 12 8 0.5585 -5.1055 -0.0020 13 7 2.6298 -5.9077 -0.0016 14 6 4.0936 -6.0493 -0.0083 15 6 3.9088 -7.4035 0.6962 16 8 4.7843 -8.4322 0.2301 17 6 5.7865 -8.8144 1.0645 18 6 6.5932 -9.8934 0.7330 19 6 7.6148 -10.2766 1.5804 20 6 7.8270 -9.5923 2.7630 21 6 7.0208 -8.5201 3.0983 22 6 6.0014 -8.1297 2.2518 23 6 2.5422 -7.3757 -0.0018 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6247 -2.5572 0.8896 27 1 3.1568 -3.4354 -0.0002 28 1 4.5168 -6.1350 -1.0091 29 1 4.6045 -5.3061 0.6038 30 1 3.8566 -7.3421 1.7832 31 1 6.4250 -10.4310 -0.1884 32 1 8.2458 -11.1137 1.3208 33 1 8.6235 -9.8959 3.4261 34 1 7.1883 -7.9875 4.0228 35 1 5.3717 -7.2923 2.5143 36 1 1.7316 -7.7624 0.6159 37 1 2.5562 -7.8113 -1.0008 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527651637.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:08 Heat of formation + Delta-G solvation = -17.113946 kcal Electronic energy + Delta-G solvation = -20129.627601 eV Core-core repulsion = 16873.152710 eV Total energy + Delta-G solvation = -3256.474890 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.92834 -40.68699 -39.25278 -37.54450 -36.16605 -34.37937 -31.95674 -31.19894 -30.27762 -28.58662 -27.12315 -25.06265 -24.07269 -23.34139 -22.09412 -20.85977 -19.68632 -19.25516 -18.08389 -17.49750 -17.34596 -16.69867 -16.66622 -16.33809 -16.00455 -15.63508 -15.07095 -14.90624 -14.51268 -14.36642 -14.15236 -13.97883 -13.97026 -13.64881 -13.09912 -12.88488 -12.76918 -12.71119 -12.43138 -12.23518 -11.72366 -11.54172 -11.47540 -11.32057 -10.84025 -10.20004 -9.90391 -9.56427 -9.14830 -8.30198 -6.47018 0.43950 0.51541 1.28295 1.44078 1.44736 1.58487 2.00028 2.32538 2.39789 2.84407 3.01370 3.04884 3.18589 3.63983 3.88056 4.00306 4.06967 4.29878 4.33039 4.39804 4.48029 4.48702 4.56063 4.64417 4.74958 4.88578 5.07685 5.14029 5.22819 5.40442 5.44874 5.53713 5.65008 5.65859 5.81712 5.88708 6.26745 6.43299 6.64567 7.07498 7.22861 7.60380 8.82466 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.026461 B = 0.003096 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.902698 B = 9041.924841 C = 9811.616755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.988 3.012 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.554 4.554 8 H 0.083 0.917 9 C 0.285 3.715 10 N -0.717 5.717 11 C 0.727 3.273 12 O -0.643 6.643 13 N -0.669 5.669 14 C 0.085 3.915 15 C 0.063 3.937 16 O -0.301 6.301 17 C 0.108 3.892 18 C -0.164 4.164 19 C -0.085 4.085 20 C -0.163 4.163 21 C -0.089 4.089 22 C -0.219 4.219 23 C 0.126 3.874 24 H 0.270 0.730 25 H -0.013 1.013 26 H -0.012 1.012 27 H 0.403 0.597 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.128 0.872 31 H 0.137 0.863 32 H 0.152 0.848 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.085 0.915 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.612 -19.609 4.405 28.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.811 3.189 4 H -0.176 1.176 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.592 4.592 8 H 0.101 0.899 9 C 0.162 3.838 10 N -0.370 5.370 11 C 0.430 3.570 12 O -0.526 6.526 13 N -0.411 5.411 14 C -0.037 4.037 15 C 0.005 3.995 16 O -0.214 6.214 17 C 0.063 3.937 18 C -0.183 4.183 19 C -0.103 4.103 20 C -0.181 4.181 21 C -0.107 4.107 22 C -0.237 4.237 23 C 0.003 3.997 24 H 0.078 0.922 25 H 0.005 0.995 26 H 0.006 0.994 27 H 0.238 0.762 28 H 0.122 0.878 29 H 0.115 0.885 30 H 0.146 0.854 31 H 0.155 0.845 32 H 0.170 0.830 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.153 0.847 36 H 0.104 0.896 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 18.378 -19.519 4.207 27.138 hybrid contribution -0.058 1.137 -0.038 1.139 sum 18.320 -18.382 4.169 26.285 Atomic orbital electron populations 1.70150 1.08279 1.28604 1.49856 1.26076 0.95806 1.03892 0.93787 0.85070 0.79019 0.77125 0.77736 1.17649 1.20424 1.20322 1.21590 0.94258 0.90327 1.53040 0.89895 1.18483 0.88026 0.83106 0.94159 1.45264 1.10979 1.03375 1.77403 1.15417 0.83454 0.80419 0.77693 1.90852 1.16034 1.84436 1.61261 1.48106 1.08239 1.06216 1.78558 1.23733 0.80457 0.96747 1.02774 1.24138 0.89139 0.86254 0.99940 1.86089 1.39419 1.53496 1.42371 1.19279 0.89323 0.94861 0.90223 1.20728 0.97564 0.97233 1.02738 1.21320 0.96025 0.99526 0.93382 1.21442 1.01408 0.97042 0.98193 1.21289 0.93679 0.96475 0.99271 1.21499 1.02773 1.03506 0.95930 1.23044 0.96208 0.78182 1.02289 0.92152 0.99524 0.99370 0.76186 0.87790 0.88464 0.85446 0.84468 0.83002 0.83780 0.84103 0.84700 0.89646 0.87997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.46 13.29 21.45 0.28 -56.17 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.99 42.39 29.54 68.60 2.03 44.42 16 4 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 6 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -30.52 9.28 25.60 0.24 -30.29 16 8 H 0.08 4.14 7.60 -2.91 -0.02 4.11 16 9 C 0.29 16.13 5.43 85.63 0.46 16.59 16 10 N -0.72 -32.32 5.55 -482.29 -2.68 -35.00 16 11 C 0.73 32.21 8.79 179.06 1.57 33.78 16 12 O -0.64 -34.94 17.12 -4.00 -0.07 -35.01 16 13 N -0.67 -21.08 3.69 -876.56 -3.23 -24.31 16 14 C 0.09 1.83 8.14 83.27 0.68 2.51 16 15 C 0.06 1.21 4.04 31.01 0.13 1.34 16 16 O -0.30 -5.90 10.19 -92.41 -0.94 -6.84 16 17 C 0.11 1.99 6.68 22.51 0.15 2.14 16 18 C -0.16 -2.61 9.99 22.37 0.22 -2.39 16 19 C -0.08 -1.06 10.04 22.25 0.22 -0.84 16 20 C -0.16 -2.01 10.04 22.28 0.22 -1.78 16 21 C -0.09 -1.26 10.04 22.25 0.22 -1.03 16 22 C -0.22 -3.65 9.02 22.36 0.20 -3.45 16 23 C 0.13 3.05 8.45 83.18 0.70 3.75 16 24 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 25 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 26 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 27 H 0.40 15.24 8.04 -92.70 -0.75 14.49 16 28 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.13 2.20 5.99 -2.39 -0.01 2.18 16 31 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 32 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 33 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 34 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 35 H 0.14 2.03 5.92 -2.91 -0.02 2.01 16 36 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -75.41 323.03 1.22 -74.19 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.34 Total: 17.71 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: 5.49 Total: 21.02 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -5.62 Total: -115.48 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -1.01 Total: -41.85 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -75.41 1.22 -74.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527651637.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.073 kcal (2) G-P(sol) polarization free energy of solvation -75.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds