Wall clock time and date at job start Mon Mar 30 2020 01:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00078 * 2 1 4 4 H 1.48504 * 109.47453 * 270.00343 * 3 2 1 5 5 H 1.48501 * 109.47325 * 29.99995 * 3 2 1 6 6 H 1.48501 * 109.47408 * 150.00021 * 3 2 1 7 7 C 1.37878 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00340 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99782 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.47069 * 299.99716 * 9 7 2 11 11 O 1.42901 * 109.47244 * 59.99773 * 9 7 2 12 12 C 1.53004 * 109.47222 * 179.97438 * 9 7 2 13 13 N 1.46894 * 109.47180 * 179.97438 * 12 9 7 14 14 N 1.36341 * 111.00208 * 66.26604 * 13 12 9 15 15 C 1.34587 * 112.94593 * 103.25469 * 14 13 12 16 16 O 1.21279 * 126.03689 * 181.61453 * 15 14 13 17 17 C 1.51808 * 107.92350 * 1.60061 * 15 14 13 18 18 C 1.48136 * 111.00156 * 186.20440 * 13 12 9 19 19 H 1.08999 * 110.94817 * 146.37867 * 18 13 12 20 20 C 1.50698 * 110.94629 * 22.66874 * 18 13 12 21 21 C 1.38235 * 120.00157 * 289.92097 * 20 18 13 22 22 C 1.38239 * 119.99758 * 179.76697 * 21 20 18 23 23 C 1.38238 * 120.00165 * 0.48638 * 22 21 20 24 24 C 1.38233 * 119.99862 * 359.78591 * 23 22 21 25 25 C 1.38239 * 119.99783 * 110.19399 * 20 18 13 26 26 H 0.97001 * 120.00153 * 359.97438 * 1 2 3 27 27 H 0.96699 * 114.00177 * 59.99815 * 11 9 7 28 28 H 1.08996 * 109.46920 * 59.99675 * 12 9 7 29 29 H 1.09000 * 109.46979 * 300.00345 * 12 9 7 30 30 H 0.97005 * 123.52606 * 283.26218 * 14 13 12 31 31 H 1.08996 * 110.85381 * 133.00465 * 17 15 14 32 32 H 1.08997 * 110.85084 * 256.43082 * 17 15 14 33 33 H 1.07996 * 120.00269 * 359.97438 * 21 20 18 34 34 H 1.08002 * 119.99656 * 180.25105 * 22 21 20 35 35 H 1.07994 * 119.99697 * 179.77219 * 23 22 21 36 36 H 1.07996 * 120.00160 * 179.97438 * 24 23 22 37 37 H 1.07995 * 120.00189 * 0.02562 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 0.4299 -2.5751 -1.1665 12 6 2.2453 -3.6621 0.0005 13 7 1.5108 -4.9342 0.0012 14 7 0.8225 -5.1016 -1.1637 15 6 1.4166 -5.9685 -2.0044 16 8 1.0251 -6.2707 -3.1118 17 6 2.6636 -6.5011 -1.3218 18 6 2.4361 -6.0814 0.1506 19 1 1.9697 -6.8869 0.7179 20 6 3.7289 -5.6505 0.7940 21 6 4.6163 -4.8530 0.0957 22 6 5.8000 -4.4538 0.6877 23 6 6.1010 -4.8603 1.9742 24 6 5.2162 -5.6625 2.6703 25 6 4.0301 -6.0574 2.0803 26 1 -0.4850 0.8400 0.0004 27 1 0.9223 -2.5299 -1.9975 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6043 -0.8894 30 1 -0.0085 -4.6437 -1.3655 31 1 2.7219 -7.5858 -1.4115 32 1 3.5592 -6.0313 -1.7285 33 1 4.3832 -4.5390 -0.9110 34 1 6.4914 -3.8273 0.1436 35 1 7.0274 -4.5515 2.4352 36 1 5.4515 -5.9805 3.6752 37 1 3.3391 -6.6845 2.6240 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001560245140.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:15 Heat of formation + Delta-G solvation = -31.422553 kcal Electronic energy + Delta-G solvation = -21960.235021 eV Core-core repulsion = 18703.139662 eV Total energy + Delta-G solvation = -3257.095358 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.49501 -39.94506 -38.59471 -37.33559 -34.32995 -33.95308 -32.44791 -31.78040 -30.21472 -29.27568 -26.61737 -24.57640 -23.65332 -22.69012 -21.94823 -21.34283 -19.27822 -18.35977 -17.90839 -17.41334 -16.73266 -16.61254 -16.18362 -15.91848 -15.91153 -15.74546 -15.22243 -14.85819 -14.49807 -14.38473 -14.04362 -13.81726 -13.53577 -13.14803 -13.01387 -12.89481 -12.74588 -12.54352 -12.15589 -12.01817 -11.75512 -11.45189 -11.09785 -10.92553 -10.73583 -10.11572 -9.75372 -9.59044 -9.18394 -8.15242 -6.40276 0.37484 0.55967 1.38905 1.39744 1.41476 1.50099 2.01950 2.37634 2.84920 3.11230 3.18094 3.35198 3.54602 3.79015 3.94751 4.11828 4.20496 4.26492 4.34510 4.43370 4.51877 4.61557 4.68027 4.77878 4.87409 4.98971 5.09415 5.19811 5.38052 5.58655 5.62018 5.66288 5.67673 5.71138 5.98859 6.10383 6.13759 6.65116 6.70415 7.26834 7.28239 7.45614 8.89063 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.013970 B = 0.007271 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.766109 B = 3849.773377 C = 5318.155325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.029 3.971 3 Si 0.955 3.045 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.581 4.581 8 H 0.059 0.941 9 C 0.235 3.765 10 H 0.028 0.972 11 O -0.572 6.572 12 C 0.019 3.981 13 N -0.285 5.285 14 N -0.550 5.550 15 C 0.491 3.509 16 O -0.577 6.577 17 C -0.172 4.172 18 C 0.101 3.899 19 H 0.135 0.865 20 C -0.097 4.097 21 C -0.120 4.120 22 C -0.132 4.132 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.104 4.104 26 H 0.261 0.739 27 H 0.349 0.651 28 H 0.093 0.907 29 H 0.039 0.961 30 H 0.430 0.570 31 H 0.136 0.864 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.131 0.869 35 H 0.142 0.858 36 H 0.148 0.852 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.234 -12.562 4.870 18.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.174 4.174 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.620 4.620 8 H 0.077 0.923 9 C 0.177 3.823 10 H 0.046 0.954 11 O -0.375 6.375 12 C -0.109 4.109 13 N -0.103 5.103 14 N -0.300 5.300 15 C 0.277 3.723 16 O -0.456 6.456 17 C -0.213 4.213 18 C -0.005 4.005 19 H 0.153 0.847 20 C -0.098 4.098 21 C -0.138 4.138 22 C -0.150 4.150 23 C -0.137 4.137 24 C -0.142 4.142 25 C -0.122 4.122 26 H 0.070 0.930 27 H 0.193 0.807 28 H 0.111 0.889 29 H 0.058 0.942 30 H 0.278 0.722 31 H 0.154 0.846 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.149 0.851 35 H 0.160 0.840 36 H 0.166 0.834 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.081 -12.688 5.184 17.625 hybrid contribution 0.758 1.586 -1.221 2.140 sum 11.839 -11.102 3.963 16.707 Atomic orbital electron populations 1.70198 1.07542 1.27312 1.48248 1.25833 0.95426 1.02712 0.93451 0.85625 0.78921 0.79182 0.78257 1.20202 1.21002 1.18708 1.21910 0.93439 0.92396 1.54219 0.92252 1.19258 0.87965 0.90236 0.84818 0.95393 1.86445 1.39381 1.95815 1.15846 1.23707 0.96485 0.89416 1.01276 1.65308 1.25198 1.03209 1.16580 1.46400 1.24983 1.44507 1.14093 1.22001 0.86150 0.79989 0.84193 1.90707 1.70711 1.64116 1.20064 1.23141 0.96747 1.05979 0.95394 1.22197 0.90080 0.93265 0.94968 0.84695 1.19531 0.94315 1.00046 0.95894 1.21230 0.94669 0.97707 1.00202 1.21337 0.96940 1.00271 0.96442 1.21502 1.00486 0.97342 0.94354 1.21465 0.93903 0.97953 1.00895 1.21278 0.97645 0.99766 0.93541 0.93035 0.80668 0.88875 0.94247 0.72245 0.84551 0.86865 0.86952 0.85082 0.83978 0.83443 0.83798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.58 12.84 21.45 0.28 -52.30 16 2 C 0.03 1.57 5.40 84.66 0.46 2.02 16 3 Si 0.96 42.53 29.54 68.60 2.03 44.55 16 4 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.58 -30.69 8.76 25.60 0.22 -30.47 16 8 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.23 11.43 3.09 29.85 0.09 11.52 16 10 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 11 O -0.57 -28.06 9.99 -148.98 -1.49 -29.55 16 12 C 0.02 0.71 3.34 86.31 0.29 1.00 16 13 N -0.29 -9.34 5.57 -489.50 -2.73 -12.07 16 14 N -0.55 -19.01 5.07 -172.82 -0.88 -19.89 16 15 C 0.49 16.36 8.63 88.04 0.76 17.12 16 16 O -0.58 -23.40 18.03 -3.03 -0.05 -23.46 16 17 C -0.17 -4.14 6.45 30.81 0.20 -3.94 16 18 C 0.10 2.46 3.80 44.54 0.17 2.63 16 19 H 0.14 2.69 8.02 -2.39 -0.02 2.67 16 20 C -0.10 -2.26 3.81 -19.87 -0.08 -2.33 16 21 C -0.12 -2.95 6.43 22.27 0.14 -2.80 16 22 C -0.13 -2.92 10.05 22.27 0.22 -2.69 16 23 C -0.12 -2.25 10.05 22.27 0.22 -2.02 16 24 C -0.12 -2.23 10.05 22.27 0.22 -2.00 16 25 C -0.10 -2.05 9.69 22.27 0.22 -1.84 16 26 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 27 H 0.35 15.98 9.04 -74.06 -0.67 15.31 16 28 H 0.09 3.50 5.96 -2.39 -0.01 3.49 16 29 H 0.04 1.47 6.21 -2.39 -0.01 1.45 16 30 H 0.43 16.31 7.16 -215.65 -1.54 14.77 16 31 H 0.14 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.11 2.62 6.05 -2.39 -0.01 2.61 16 33 H 0.11 2.92 5.21 -2.91 -0.02 2.91 16 34 H 0.13 2.54 8.06 -2.91 -0.02 2.51 16 35 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 37 H 0.14 2.21 8.02 -2.91 -0.02 2.19 16 Total: -1.00 -66.82 304.08 -0.80 -67.62 By element: Atomic # 1 Polarization: 39.98 SS G_CDS: -1.10 Total: 38.89 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 3.14 Total: -13.79 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -3.33 Total: -84.26 kcal Atomic # 8 Polarization: -51.47 SS G_CDS: -1.54 Total: -53.01 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -66.82 -0.80 -67.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560245140.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.196 kcal (2) G-P(sol) polarization free energy of solvation -66.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds