Wall clock time and date at job start Mon Mar 30 2020 02:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99998 * 2 1 4 4 H 1.48500 * 109.47384 * 270.00625 * 3 2 1 5 5 H 1.48497 * 109.46981 * 30.00986 * 3 2 1 6 6 H 1.48504 * 109.46772 * 150.00396 * 3 2 1 7 7 C 1.38700 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00214 * 359.97438 * 7 2 1 9 9 O 1.34819 * 119.99745 * 179.97438 * 7 2 1 10 10 C 1.35519 * 116.99614 * 185.05624 * 9 7 2 11 11 C 1.38826 * 120.16427 * 354.39070 * 10 9 7 12 12 C 1.38029 * 120.07538 * 180.02562 * 11 10 9 13 13 C 1.38576 * 120.39641 * 359.75108 * 12 11 10 14 14 C 1.37825 * 120.32414 * 0.50291 * 13 12 11 15 15 C 1.39658 * 119.92031 * 359.49828 * 14 13 12 16 16 C 1.47533 * 120.19883 * 180.27166 * 15 14 13 17 17 O 1.21590 * 120.00215 * 180.02562 * 16 15 14 18 18 N 1.34776 * 120.00212 * 0.02562 * 16 15 14 19 19 C 1.46494 * 120.00347 * 179.97438 * 18 16 15 20 20 H 1.09001 * 112.85094 * 25.33321 * 19 18 16 21 21 C 1.53787 * 113.61396 * 156.52886 * 19 18 16 22 22 C 1.53785 * 87.08110 * 139.98208 * 21 19 18 23 23 H 1.08995 * 113.61637 * 89.11438 * 22 21 19 24 24 N 1.46899 * 113.61366 * 219.93415 * 22 21 19 25 25 C 1.53781 * 113.61692 * 254.13407 * 19 18 16 26 26 H 0.96997 * 119.99905 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.96302 * 0.02562 * 11 10 9 28 28 H 1.07991 * 119.80313 * 179.97438 * 12 11 10 29 29 H 1.07998 * 119.83452 * 180.28147 * 13 12 11 30 30 H 1.08001 * 120.03853 * 179.77176 * 14 13 12 31 31 H 0.97004 * 119.99573 * 359.97438 * 18 16 15 32 32 H 1.09002 * 113.61210 * 254.52614 * 21 19 18 33 33 H 1.08997 * 113.61451 * 25.34925 * 21 19 18 34 34 H 1.00896 * 111.00134 * 179.97438 * 24 22 21 35 35 H 1.00904 * 111.00087 * 303.95740 * 24 22 21 36 36 H 1.09000 * 113.60962 * 334.57259 * 25 19 18 37 37 H 1.08997 * 113.61407 * 105.46469 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0087 -1.2012 -0.0005 8 1 1.4687 -2.1364 -0.0005 9 8 3.3569 -1.2012 -0.0011 10 6 3.9720 -2.4040 -0.1080 11 6 3.2243 -3.5736 -0.0937 12 6 3.8528 -4.7977 -0.2022 13 6 5.2307 -4.8695 -0.3311 14 6 5.9894 -3.7189 -0.3420 15 6 5.3675 -2.4732 -0.2331 16 6 6.1732 -1.2375 -0.2501 17 8 5.6280 -0.1548 -0.1547 18 7 7.5136 -1.3085 -0.3715 19 6 8.3136 -0.0814 -0.3889 20 1 7.8262 0.7490 0.1219 21 6 9.7761 -0.2934 0.0368 22 6 10.1618 0.6884 -1.0823 23 1 10.1800 1.7301 -0.7621 24 7 11.3715 0.2965 -1.8178 25 6 8.8520 0.2833 -1.7825 26 1 -0.4850 0.8400 0.0004 27 1 2.1497 -3.5257 0.0025 28 1 3.2669 -5.7048 -0.1901 29 1 5.7126 -5.8319 -0.4199 30 1 7.0633 -3.7804 -0.4390 31 1 7.9486 -2.1722 -0.4473 32 1 9.9975 0.0767 1.0378 33 1 10.1360 -1.3089 -0.1283 34 1 11.5877 0.9660 -2.5410 35 1 12.1528 0.1759 -1.1909 36 1 8.9592 -0.5739 -2.4472 37 1 8.3283 1.1182 -2.2481 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580051974.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:34 Heat of formation + Delta-G solvation = -11.609172 kcal Electronic energy + Delta-G solvation = -21030.859855 eV Core-core repulsion = 17774.623670 eV Total energy + Delta-G solvation = -3256.236186 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.03675 -39.14572 -37.62273 -36.49260 -33.67085 -32.44086 -31.60175 -30.11863 -29.18511 -25.81582 -25.35706 -24.13762 -22.48141 -21.18874 -20.15815 -19.61553 -17.89767 -17.71457 -16.53623 -16.34697 -15.85730 -15.30439 -14.88582 -14.52898 -14.36580 -14.09600 -13.89114 -13.71056 -13.41063 -12.79119 -12.52927 -12.34172 -12.16030 -12.02440 -11.66887 -11.39029 -11.26571 -11.02896 -10.80076 -10.70788 -10.53498 -10.04191 -9.60497 -9.09895 -8.97046 -8.88189 -8.65996 -8.36251 -7.46637 -6.46255 -4.11219 1.58889 2.20275 3.31879 3.38566 3.55163 3.56749 3.66893 4.35370 4.36492 4.41933 4.46882 4.54512 4.75240 4.84909 4.90047 5.10496 5.29719 5.40105 5.48578 5.59397 5.65745 5.70244 5.90300 5.93940 6.00555 6.05319 6.22774 6.39447 6.56583 6.82904 6.88022 6.91299 7.03034 7.12658 7.16080 7.49327 7.69082 7.95822 7.99712 8.87591 8.91669 9.52985 10.58945 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.016060 B = 0.005791 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.045198 B = 4833.647502 C = 6413.490923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.072 3.928 3 Si 0.900 3.100 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.239 1.239 7 C -0.397 4.397 8 H 0.108 0.892 9 O -0.166 6.166 10 C 0.201 3.799 11 C -0.227 4.227 12 C -0.051 4.051 13 C -0.221 4.221 14 C -0.040 4.040 15 C -0.227 4.227 16 C 0.561 3.439 17 O -0.519 6.519 18 N -0.728 5.728 19 C 0.130 3.870 20 H 0.112 0.888 21 C -0.139 4.139 22 C 0.058 3.942 23 H 0.063 0.937 24 N -0.838 5.838 25 C -0.141 4.141 26 H 0.281 0.719 27 H 0.138 0.862 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.395 0.605 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.341 0.659 35 H 0.340 0.660 36 H 0.092 0.908 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.906 -3.245 -1.185 19.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.134 4.134 3 Si 0.725 3.275 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.161 1.161 7 C -0.472 4.472 8 H 0.126 0.874 9 O -0.066 6.066 10 C 0.144 3.856 11 C -0.246 4.246 12 C -0.069 4.069 13 C -0.240 4.240 14 C -0.059 4.059 15 C -0.232 4.232 16 C 0.351 3.649 17 O -0.395 6.395 18 N -0.382 5.382 19 C 0.023 3.977 20 H 0.130 0.870 21 C -0.178 4.178 22 C -0.053 4.053 23 H 0.081 0.919 24 N -0.368 5.368 25 C -0.181 4.181 26 H 0.092 0.908 27 H 0.156 0.844 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.230 0.770 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.111 0.889 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 17.913 -2.687 -1.275 18.158 hybrid contribution 0.716 1.014 0.241 1.265 sum 18.629 -1.673 -1.034 18.733 Atomic orbital electron populations 1.69640 1.05802 1.28923 1.46226 1.24490 0.94957 0.99278 0.94634 0.86199 0.81274 0.80444 0.79581 1.19961 1.21272 1.16134 1.20932 0.77153 0.96761 1.52312 0.87446 1.83783 1.22053 1.24957 1.75794 1.19029 0.90315 0.85809 0.90483 1.21286 1.01361 0.91661 1.10330 1.20967 0.94389 0.96759 0.94835 1.20542 0.94019 0.97342 1.12122 1.20765 0.98137 0.91277 0.95734 1.18880 0.91212 0.92928 1.20170 1.18240 0.81348 0.89341 0.75922 1.90844 1.70994 1.29404 1.48291 1.45814 1.06677 1.08465 1.77206 1.22142 0.89530 0.89278 0.96711 0.86992 1.23430 0.95702 1.00585 0.98039 1.22654 0.90753 0.96668 0.95270 0.91900 1.58812 1.06615 1.54217 1.17115 1.23578 0.94523 1.02206 0.97751 0.90847 0.84433 0.86836 0.87001 0.86823 0.76978 0.91075 0.88904 0.84709 0.84740 0.88949 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.44 13.96 55.48 0.77 -24.67 16 2 C 0.07 2.08 5.49 -17.51 -0.10 1.98 16 3 Si 0.90 23.38 28.62 -169.99 -4.86 18.51 16 4 H -0.27 -7.11 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.24 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.40 -11.44 9.95 30.90 0.31 -11.13 16 8 H 0.11 3.08 5.44 -52.49 -0.29 2.79 16 9 O -0.17 -4.60 6.67 -21.07 -0.14 -4.74 16 10 C 0.20 4.80 6.66 -38.60 -0.26 4.55 16 11 C -0.23 -4.84 9.16 -39.44 -0.36 -5.20 16 12 C -0.05 -0.88 10.03 -39.53 -0.40 -1.27 16 13 C -0.22 -3.46 10.02 -39.61 -0.40 -3.85 16 14 C -0.04 -0.65 9.53 -39.20 -0.37 -1.02 16 15 C -0.23 -4.66 5.89 -104.81 -0.62 -5.27 16 16 C 0.56 11.47 7.76 -12.47 -0.10 11.37 16 17 O -0.52 -13.00 14.79 -16.57 -0.24 -13.25 16 18 N -0.73 -10.89 5.31 -54.06 -0.29 -11.18 16 19 C 0.13 1.72 4.21 -67.12 -0.28 1.44 16 20 H 0.11 1.72 7.50 -51.93 -0.39 1.33 16 21 C -0.14 -1.35 7.62 -25.91 -0.20 -1.55 16 22 C 0.06 0.55 4.96 -66.81 -0.33 0.22 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 N -0.84 -6.64 9.58 -3.90 -0.04 -6.68 16 25 C -0.14 -1.69 7.70 -25.83 -0.20 -1.89 16 26 H 0.28 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.14 3.04 5.64 -52.49 -0.30 2.74 16 28 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.11 1.38 6.40 -52.49 -0.34 1.05 16 31 H 0.40 4.74 6.74 -40.82 -0.28 4.47 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.85 8.11 -51.93 -0.42 0.43 16 34 H 0.34 2.30 9.08 -39.29 -0.36 1.94 16 35 H 0.34 2.14 9.07 -39.29 -0.36 1.78 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 314.20 15.07 4.73 4.73 Total: -1.00 -33.14 314.20 -7.75 -40.89 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -4.39 Total: 8.01 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -3.30 Total: -11.63 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.45 Total: -42.53 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.39 Total: -17.99 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -4.86 Total: 18.51 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.14 -7.75 -40.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051974.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.282 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds