Wall clock time and date at job start Mon Mar 30 2020 02:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99998 * 2 1 4 4 H 1.48500 * 109.47384 * 270.00625 * 3 2 1 5 5 H 1.48497 * 109.46981 * 30.00986 * 3 2 1 6 6 H 1.48504 * 109.46772 * 150.00396 * 3 2 1 7 7 C 1.38700 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00214 * 359.97438 * 7 2 1 9 9 O 1.34819 * 119.99745 * 179.97438 * 7 2 1 10 10 C 1.35519 * 116.99614 * 185.05624 * 9 7 2 11 11 C 1.38826 * 120.16427 * 354.39070 * 10 9 7 12 12 C 1.38029 * 120.07538 * 180.02562 * 11 10 9 13 13 C 1.38576 * 120.39641 * 359.75108 * 12 11 10 14 14 C 1.37825 * 120.32414 * 0.50291 * 13 12 11 15 15 C 1.39658 * 119.92031 * 359.49828 * 14 13 12 16 16 C 1.47533 * 120.19883 * 180.27166 * 15 14 13 17 17 O 1.21590 * 120.00215 * 180.02562 * 16 15 14 18 18 N 1.34776 * 120.00212 * 0.02562 * 16 15 14 19 19 C 1.46494 * 120.00347 * 179.97438 * 18 16 15 20 20 H 1.09001 * 112.85094 * 25.33321 * 19 18 16 21 21 C 1.53787 * 113.61396 * 156.52886 * 19 18 16 22 22 C 1.53785 * 87.08110 * 139.98208 * 21 19 18 23 23 H 1.08995 * 113.61637 * 89.11438 * 22 21 19 24 24 N 1.46899 * 113.61366 * 219.93415 * 22 21 19 25 25 C 1.53781 * 113.61692 * 254.13407 * 19 18 16 26 26 H 0.96997 * 119.99905 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.96302 * 0.02562 * 11 10 9 28 28 H 1.07991 * 119.80313 * 179.97438 * 12 11 10 29 29 H 1.07998 * 119.83452 * 180.28147 * 13 12 11 30 30 H 1.08001 * 120.03853 * 179.77176 * 14 13 12 31 31 H 0.97004 * 119.99573 * 359.97438 * 18 16 15 32 32 H 1.09002 * 113.61210 * 254.52614 * 21 19 18 33 33 H 1.08997 * 113.61451 * 25.34925 * 21 19 18 34 34 H 1.00896 * 111.00134 * 179.97438 * 24 22 21 35 35 H 1.00904 * 111.00087 * 303.95740 * 24 22 21 36 36 H 1.09000 * 113.60962 * 334.57259 * 25 19 18 37 37 H 1.08997 * 113.61407 * 105.46469 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0087 -1.2012 -0.0005 8 1 1.4687 -2.1364 -0.0005 9 8 3.3569 -1.2012 -0.0011 10 6 3.9720 -2.4040 -0.1080 11 6 3.2243 -3.5736 -0.0937 12 6 3.8528 -4.7977 -0.2022 13 6 5.2307 -4.8695 -0.3311 14 6 5.9894 -3.7189 -0.3420 15 6 5.3675 -2.4732 -0.2331 16 6 6.1732 -1.2375 -0.2501 17 8 5.6280 -0.1548 -0.1547 18 7 7.5136 -1.3085 -0.3715 19 6 8.3136 -0.0814 -0.3889 20 1 7.8262 0.7490 0.1219 21 6 9.7761 -0.2934 0.0368 22 6 10.1618 0.6884 -1.0823 23 1 10.1800 1.7301 -0.7621 24 7 11.3715 0.2965 -1.8178 25 6 8.8520 0.2833 -1.7825 26 1 -0.4850 0.8400 0.0004 27 1 2.1497 -3.5257 0.0025 28 1 3.2669 -5.7048 -0.1901 29 1 5.7126 -5.8319 -0.4199 30 1 7.0633 -3.7804 -0.4390 31 1 7.9486 -2.1722 -0.4473 32 1 9.9975 0.0767 1.0378 33 1 10.1360 -1.3089 -0.1283 34 1 11.5877 0.9660 -2.5410 35 1 12.1528 0.1759 -1.1909 36 1 8.9592 -0.5739 -2.4472 37 1 8.3283 1.1182 -2.2481 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580051974.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:34 Heat of formation + Delta-G solvation = -36.731982 kcal Electronic energy + Delta-G solvation = -21031.949262 eV Core-core repulsion = 17774.623670 eV Total energy + Delta-G solvation = -3257.325592 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.49591 -40.49587 -39.07988 -38.12692 -34.94997 -34.51383 -32.70314 -31.41769 -30.79190 -27.33490 -26.69747 -25.47013 -23.81390 -22.73134 -21.61339 -20.64440 -19.80444 -19.29416 -17.98189 -17.62309 -16.72938 -16.52484 -16.24697 -16.11493 -15.91851 -15.66709 -15.49113 -15.30681 -14.85078 -14.36865 -14.14733 -14.03159 -13.38736 -13.21772 -13.03093 -12.85295 -12.60629 -12.57678 -12.38013 -12.04492 -11.94549 -11.52634 -11.43301 -10.97855 -10.69088 -10.08101 -9.81188 -9.63819 -9.14470 -8.58752 -6.27370 0.05727 0.65244 1.22918 1.28573 1.56710 2.02362 2.25884 2.28868 2.75241 3.02201 3.16569 3.55683 3.56385 3.69493 3.88789 3.94215 4.03095 4.05674 4.26486 4.47901 4.53045 4.62810 4.79805 4.81832 4.83021 4.99008 5.05360 5.11050 5.20207 5.29259 5.47990 5.61564 5.64881 5.70188 5.83722 6.16041 6.27363 6.62249 6.67673 6.78730 7.41817 7.58821 8.51859 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.016060 B = 0.005791 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.045198 B = 4833.647502 C = 6413.490923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.027 3.973 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.264 1.264 6 H -0.267 1.267 7 C -0.404 4.404 8 H 0.092 0.908 9 O -0.210 6.210 10 C 0.160 3.840 11 C -0.251 4.251 12 C -0.042 4.042 13 C -0.189 4.189 14 C -0.030 4.030 15 C -0.235 4.235 16 C 0.554 3.446 17 O -0.576 6.576 18 N -0.702 5.702 19 C 0.110 3.890 20 H 0.084 0.916 21 C -0.118 4.118 22 C 0.071 3.929 23 H 0.068 0.932 24 N -0.839 5.839 25 C -0.142 4.142 26 H 0.286 0.714 27 H 0.115 0.885 28 H 0.151 0.849 29 H 0.168 0.832 30 H 0.166 0.834 31 H 0.413 0.587 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.349 0.651 35 H 0.353 0.647 36 H 0.093 0.907 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.256 -6.038 -1.499 24.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.174 4.174 3 Si 0.779 3.221 4 H -0.203 1.203 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.480 4.480 8 H 0.110 0.890 9 O -0.114 6.114 10 C 0.107 3.893 11 C -0.271 4.271 12 C -0.061 4.061 13 C -0.207 4.207 14 C -0.048 4.048 15 C -0.240 4.240 16 C 0.344 3.656 17 O -0.456 6.456 18 N -0.356 5.356 19 C 0.005 3.995 20 H 0.102 0.898 21 C -0.157 4.157 22 C -0.041 4.041 23 H 0.086 0.914 24 N -0.371 5.371 25 C -0.182 4.182 26 H 0.096 0.904 27 H 0.133 0.867 28 H 0.169 0.831 29 H 0.185 0.815 30 H 0.183 0.817 31 H 0.252 0.748 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.162 0.838 35 H 0.167 0.833 36 H 0.111 0.889 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 22.354 -5.541 -1.597 23.086 hybrid contribution -0.264 1.481 0.278 1.530 sum 22.090 -4.061 -1.319 22.498 Atomic orbital electron populations 1.69682 1.06393 1.29553 1.49490 1.25029 0.95625 1.01362 0.95340 0.85419 0.79066 0.78606 0.78970 1.20307 1.18888 1.19127 1.20912 0.78418 0.96313 1.52337 0.89047 1.83772 1.20777 1.26986 1.79883 1.19786 0.92134 0.85694 0.91651 1.21332 1.00570 0.92965 1.12192 1.21452 0.95927 0.96173 0.92507 1.21245 0.93029 0.99412 1.07032 1.21357 1.00804 0.89331 0.93300 1.19333 0.90087 0.95106 1.19440 1.18452 0.82997 0.88588 0.75565 1.90828 1.72455 1.31307 1.51003 1.45601 1.04848 1.10163 1.74939 1.22356 0.91057 0.87948 0.98184 0.89814 1.23340 0.91889 1.01619 0.98823 1.22473 0.90230 0.96968 0.94405 0.91388 1.58736 1.06507 1.54443 1.17420 1.23561 0.96065 1.01723 0.96836 0.90439 0.86746 0.83107 0.81495 0.81657 0.74805 0.89818 0.87277 0.83823 0.83286 0.88853 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.36 13.96 21.62 0.30 -56.05 16 2 C 0.03 1.64 5.49 84.85 0.47 2.11 16 3 Si 0.96 51.62 28.62 68.60 1.96 53.58 16 4 H -0.28 -14.82 7.11 99.48 0.71 -14.11 16 5 H -0.26 -13.00 7.11 99.48 0.71 -12.30 16 6 H -0.27 -15.50 7.11 99.48 0.71 -14.80 16 7 C -0.40 -25.05 9.95 67.93 0.68 -24.38 16 8 H 0.09 5.72 5.44 -2.91 -0.02 5.71 16 9 O -0.21 -12.46 6.67 0.79 0.01 -12.45 16 10 C 0.16 7.90 6.66 22.91 0.15 8.06 16 11 C -0.25 -10.85 9.16 22.36 0.20 -10.65 16 12 C -0.04 -1.31 10.03 22.30 0.22 -1.09 16 13 C -0.19 -4.70 10.02 22.25 0.22 -4.48 16 14 C -0.03 -0.81 9.53 22.52 0.21 -0.59 16 15 C -0.24 -9.40 5.89 -19.99 -0.12 -9.52 16 16 C 0.55 22.67 7.76 86.69 0.67 23.35 16 17 O -0.58 -30.28 14.79 16.90 0.25 -30.03 16 18 N -0.70 -19.61 5.31 -443.20 -2.35 -21.97 16 19 C 0.11 2.80 4.21 45.52 0.19 2.99 16 20 H 0.08 2.65 7.50 -2.39 -0.02 2.63 16 21 C -0.12 -1.91 7.62 31.12 0.24 -1.67 16 22 C 0.07 1.15 4.96 45.50 0.23 1.38 16 23 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 24 N -0.84 -10.43 9.58 -166.25 -1.59 -12.02 16 25 C -0.14 -3.22 7.70 31.18 0.24 -2.98 16 26 H 0.29 16.26 8.31 -92.71 -0.77 15.49 16 27 H 0.11 5.41 5.64 -2.91 -0.02 5.39 16 28 H 0.15 3.55 8.06 -2.92 -0.02 3.53 16 29 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 30 H 0.17 2.79 6.40 -2.91 -0.02 2.78 16 31 H 0.41 8.12 6.74 -92.71 -0.63 7.50 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.11 1.46 8.11 -2.39 -0.02 1.44 16 34 H 0.35 3.65 9.08 -89.70 -0.81 2.84 16 35 H 0.35 3.06 9.07 -89.69 -0.81 2.25 16 36 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -80.97 314.20 1.07 -79.91 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -1.12 Total: 16.50 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: 3.61 Total: -17.46 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -3.65 Total: -90.04 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: 0.26 Total: -42.49 kcal Atomic # 14 Polarization: 51.62 SS G_CDS: 1.96 Total: 53.58 kcal Total: -80.97 1.07 -79.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051974.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.174 kcal (2) G-P(sol) polarization free energy of solvation -80.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds