Wall clock time and date at job start Mon Mar 30 2020 01:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86794 * 119.99917 * 2 1 4 4 H 1.48497 * 109.47138 * 274.98696 * 3 2 1 5 5 H 1.48500 * 109.47508 * 34.98879 * 3 2 1 6 6 H 1.48506 * 109.47150 * 154.98511 * 3 2 1 7 7 C 1.39909 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99652 * 199.63635 * 7 2 1 9 9 C 1.41150 * 119.99812 * 19.63524 * 7 2 1 10 10 C 1.40864 * 120.16633 * 25.27203 * 9 7 2 11 11 C 1.36382 * 119.82989 * 180.24684 * 10 9 7 12 12 C 1.39484 * 120.16607 * 359.48004 * 11 10 9 13 13 N 1.39232 * 119.83217 * 180.29717 * 12 11 10 14 14 C 1.34773 * 120.00268 * 324.32939 * 13 12 11 15 15 O 1.21281 * 119.99858 * 5.08398 * 14 13 12 16 16 C 1.50695 * 120.00154 * 185.09082 * 14 13 12 17 17 C 1.52998 * 109.47357 * 181.48223 * 16 14 13 18 18 N 1.46898 * 113.00025 * 293.91254 * 17 16 14 19 19 C 1.54038 * 113.82130 * 161.92209 * 17 16 14 20 20 O 1.44174 * 85.51756 * 223.19854 * 19 17 16 21 21 C 1.44176 * 93.34419 * 24.19464 * 20 19 17 22 22 C 1.39482 * 120.33294 * 0.27710 * 12 11 10 23 23 C 1.36377 * 120.16772 * 359.97231 * 22 12 11 24 24 H 0.97001 * 120.00030 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.08828 * 0.02974 * 10 9 7 26 26 H 1.07991 * 119.91652 * 179.75761 * 11 10 9 27 27 H 0.97006 * 119.99591 * 144.33345 * 13 12 11 28 28 H 1.09006 * 109.47066 * 301.48385 * 16 14 13 29 29 H 1.08995 * 109.47590 * 61.48220 * 16 14 13 30 30 H 1.00907 * 111.00132 * 184.32289 * 18 17 16 31 31 H 1.00899 * 111.00206 * 308.27702 * 18 17 16 32 32 H 1.09001 * 113.86154 * 337.34832 * 19 17 16 33 33 H 1.08996 * 113.86348 * 109.04933 * 19 17 16 34 34 H 1.08999 * 113.86177 * 221.66001 * 21 20 19 35 35 H 1.08992 * 113.86644 * 89.95446 * 21 20 19 36 36 H 1.07997 * 119.91684 * 180.02562 * 22 12 11 37 37 H 1.08000 * 120.08462 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3848 2.1072 -1.3947 5 1 1.4969 2.6200 0.8028 6 1 3.5890 1.4120 0.5920 7 6 2.0083 -1.2117 -0.0005 8 1 3.0411 -1.2390 0.3138 9 6 1.3640 -2.3983 -0.4118 10 6 0.2662 -2.3390 -1.2925 11 6 -0.3544 -3.4895 -1.6815 12 6 0.1022 -4.7233 -1.2181 13 7 -0.5327 -5.8939 -1.6246 14 6 -1.8674 -5.9069 -1.8109 15 8 -2.5032 -4.8786 -1.7145 16 6 -2.5700 -7.1991 -2.1387 17 6 -4.0636 -6.9321 -2.3351 18 7 -4.7362 -6.4996 -1.1028 19 6 -4.8023 -8.0538 -3.0893 20 8 -5.4522 -6.9871 -3.8092 21 6 -4.3826 -6.0531 -3.5592 22 6 1.1918 -4.7904 -0.3499 23 6 1.8193 -3.6482 0.0518 24 1 -0.4850 0.8400 -0.0004 25 1 -0.0854 -1.3847 -1.6560 26 1 -1.1986 -3.4453 -2.3536 27 1 -0.0143 -6.7001 -1.7737 28 1 -2.1522 -7.6176 -3.0545 29 1 -2.4318 -7.9057 -1.3204 30 1 -5.7297 -6.4001 -1.2489 31 1 -4.5443 -7.1359 -0.3437 32 1 -4.1517 -8.6714 -3.7085 33 1 -5.4763 -8.6372 -2.4621 34 1 -4.7240 -5.0497 -3.3047 35 1 -3.6040 -6.0598 -4.3219 36 1 1.5399 -5.7493 0.0044 37 1 2.6631 -3.7017 0.7238 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580054902.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:47 Heat of formation + Delta-G solvation = -21.177217 kcal Electronic energy + Delta-G solvation = -20876.230997 eV Core-core repulsion = 17619.579910 eV Total energy + Delta-G solvation = -3256.651087 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.94060 -39.25565 -37.14683 -34.42717 -33.70932 -32.89918 -30.25454 -29.41767 -28.75373 -26.69077 -26.41063 -24.59828 -21.49896 -21.07644 -19.67061 -19.24707 -17.32002 -17.15690 -16.59078 -16.35760 -15.99444 -15.45423 -15.11978 -14.91674 -14.49699 -13.97978 -13.65525 -13.25178 -13.03201 -12.85216 -12.61746 -12.09273 -12.02651 -11.80433 -11.51080 -11.33586 -11.11673 -10.90976 -10.59470 -10.47657 -9.96163 -9.89721 -9.79448 -9.35395 -9.01129 -8.71314 -8.55732 -7.48351 -6.98174 -6.71693 -4.25249 2.66066 3.04589 3.09975 3.13715 3.14869 3.40366 3.53566 3.66728 3.96079 4.18147 4.35343 4.61857 4.66704 4.90471 5.12542 5.21564 5.33758 5.41375 5.62134 5.70703 5.76022 5.95220 6.02641 6.17779 6.44684 6.86781 7.01674 7.04161 7.09659 7.19347 7.33041 7.34331 7.63736 7.73261 8.02482 8.09378 8.27068 8.37704 8.66686 8.88262 8.91872 9.06925 10.21671 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.032401 B = 0.003781 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.950557 B = 7402.868436 C = 7955.333934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.463 4.463 8 H 0.078 0.922 9 C 0.107 3.893 10 C -0.159 4.159 11 C -0.084 4.084 12 C -0.006 4.006 13 N -0.659 5.659 14 C 0.497 3.503 15 O -0.500 6.500 16 C -0.134 4.134 17 C 0.084 3.916 18 N -0.801 5.801 19 C -0.003 4.003 20 O -0.385 6.385 21 C 0.053 3.947 22 C -0.105 4.105 23 C -0.217 4.217 24 H 0.281 0.719 25 H 0.115 0.885 26 H 0.106 0.894 27 H 0.391 0.609 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.348 0.652 31 H 0.343 0.657 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.124 -13.811 -4.446 15.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.492 4.492 8 H 0.096 0.904 9 C 0.105 3.895 10 C -0.179 4.179 11 C -0.104 4.104 12 C -0.098 4.098 13 N -0.303 5.303 14 C 0.282 3.718 15 O -0.374 6.374 16 C -0.175 4.175 17 C -0.012 4.012 18 N -0.331 5.331 19 C -0.083 4.083 20 O -0.304 6.304 21 C -0.024 4.024 22 C -0.125 4.125 23 C -0.237 4.237 24 H 0.092 0.908 25 H 0.133 0.867 26 H 0.124 0.876 27 H 0.224 0.776 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.162 0.838 31 H 0.157 0.843 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.636 -12.218 -4.515 14.192 hybrid contribution 0.281 -0.699 0.115 0.763 sum -5.355 -12.917 -4.400 14.659 Atomic orbital electron populations 1.69881 1.07586 1.29327 1.34240 1.25928 0.94666 1.01310 0.92332 0.86334 0.80615 0.80829 0.79144 1.19335 1.20314 1.18586 1.19545 0.98841 0.91605 1.39241 0.90392 1.17649 0.91005 0.92010 0.88873 1.20937 0.99520 0.96791 1.00605 1.20525 0.98777 0.91449 0.99617 1.17164 1.00445 0.85158 1.07025 1.42993 1.06867 1.12587 1.67823 1.20228 0.82139 0.90516 0.78870 1.90743 1.64962 1.33420 1.48299 1.21763 0.94470 0.97573 1.03689 1.23377 0.92806 0.92712 0.92268 1.58318 1.15524 1.54692 1.04585 1.24951 0.96003 0.92668 0.94647 1.89661 1.39174 1.23585 1.77940 1.24171 0.88762 0.95913 0.93563 1.20059 0.97447 0.97096 0.97934 1.20533 1.04404 0.92511 1.06279 0.90783 0.86674 0.87586 0.77622 0.88670 0.88966 0.83799 0.84334 0.90015 0.89641 0.87643 0.89973 0.89394 0.88770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.99 11.11 55.55 0.62 -20.37 16 2 C 0.08 1.95 5.08 -17.33 -0.09 1.86 16 3 Si 0.91 18.88 29.60 -169.99 -5.03 13.85 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.46 -12.41 9.02 -37.85 -0.34 -12.75 16 8 H 0.08 2.00 7.92 -52.49 -0.42 1.58 16 9 C 0.11 2.90 5.56 -106.80 -0.59 2.31 16 10 C -0.16 -4.28 8.64 -39.26 -0.34 -4.62 16 11 C -0.08 -2.09 8.62 -39.79 -0.34 -2.43 16 12 C -0.01 -0.13 6.30 -83.57 -0.53 -0.65 16 13 N -0.66 -11.18 5.30 -9.74 -0.05 -11.24 16 14 C 0.50 8.25 7.43 -10.99 -0.08 8.17 16 15 O -0.50 -10.54 12.30 5.56 0.07 -10.48 16 16 C -0.13 -1.45 5.32 -27.89 -0.15 -1.60 16 17 C 0.08 0.95 0.96 -130.52 -0.13 0.83 16 18 N -0.80 -9.62 8.80 -4.62 -0.04 -9.66 16 19 C 0.00 -0.02 8.50 37.61 0.32 0.29 16 20 O -0.38 -4.96 12.36 -35.23 -0.44 -5.39 16 21 C 0.05 0.69 7.51 37.61 0.28 0.97 16 22 C -0.11 -2.31 9.90 -39.79 -0.39 -2.71 16 23 C -0.22 -5.31 9.74 -39.26 -0.38 -5.69 16 24 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 25 H 0.12 3.23 6.28 -52.49 -0.33 2.90 16 26 H 0.11 2.64 6.22 -52.49 -0.33 2.32 16 27 H 0.39 5.06 8.82 -40.82 -0.36 4.70 16 28 H 0.09 0.79 8.06 -51.93 -0.42 0.37 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.35 3.81 8.85 -39.29 -0.35 3.46 16 31 H 0.34 3.41 9.02 -39.29 -0.35 3.06 16 32 H 0.08 0.62 8.04 -51.93 -0.42 0.20 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.11 1.58 8.14 -51.93 -0.42 1.15 16 35 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 36 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 37 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 313.52 15.07 4.72 4.72 Total: -1.00 -32.01 313.52 -7.55 -39.56 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -4.64 Total: 15.03 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -2.76 Total: -16.03 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.53 Total: -41.27 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.37 Total: -15.87 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.01 -7.55 -39.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580054902.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.384 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds