Wall clock time and date at job start Mon Mar 30 2020 01:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86794 * 119.99917 * 2 1 4 4 H 1.48497 * 109.47138 * 274.98696 * 3 2 1 5 5 H 1.48500 * 109.47508 * 34.98879 * 3 2 1 6 6 H 1.48506 * 109.47150 * 154.98511 * 3 2 1 7 7 C 1.39909 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99652 * 199.63635 * 7 2 1 9 9 C 1.41150 * 119.99812 * 19.63524 * 7 2 1 10 10 C 1.40864 * 120.16633 * 25.27203 * 9 7 2 11 11 C 1.36382 * 119.82989 * 180.24684 * 10 9 7 12 12 C 1.39484 * 120.16607 * 359.48004 * 11 10 9 13 13 N 1.39232 * 119.83217 * 180.29717 * 12 11 10 14 14 C 1.34773 * 120.00268 * 324.32939 * 13 12 11 15 15 O 1.21281 * 119.99858 * 5.08398 * 14 13 12 16 16 C 1.50695 * 120.00154 * 185.09082 * 14 13 12 17 17 C 1.52998 * 109.47357 * 181.48223 * 16 14 13 18 18 N 1.46898 * 113.00025 * 293.91254 * 17 16 14 19 19 C 1.54038 * 113.82130 * 161.92209 * 17 16 14 20 20 O 1.44174 * 85.51756 * 223.19854 * 19 17 16 21 21 C 1.44176 * 93.34419 * 24.19464 * 20 19 17 22 22 C 1.39482 * 120.33294 * 0.27710 * 12 11 10 23 23 C 1.36377 * 120.16772 * 359.97231 * 22 12 11 24 24 H 0.97001 * 120.00030 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.08828 * 0.02974 * 10 9 7 26 26 H 1.07991 * 119.91652 * 179.75761 * 11 10 9 27 27 H 0.97006 * 119.99591 * 144.33345 * 13 12 11 28 28 H 1.09006 * 109.47066 * 301.48385 * 16 14 13 29 29 H 1.08995 * 109.47590 * 61.48220 * 16 14 13 30 30 H 1.00907 * 111.00132 * 184.32289 * 18 17 16 31 31 H 1.00899 * 111.00206 * 308.27702 * 18 17 16 32 32 H 1.09001 * 113.86154 * 337.34832 * 19 17 16 33 33 H 1.08996 * 113.86348 * 109.04933 * 19 17 16 34 34 H 1.08999 * 113.86177 * 221.66001 * 21 20 19 35 35 H 1.08992 * 113.86644 * 89.95446 * 21 20 19 36 36 H 1.07997 * 119.91684 * 180.02562 * 22 12 11 37 37 H 1.08000 * 120.08462 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3848 2.1072 -1.3947 5 1 1.4969 2.6200 0.8028 6 1 3.5890 1.4120 0.5920 7 6 2.0083 -1.2117 -0.0005 8 1 3.0411 -1.2390 0.3138 9 6 1.3640 -2.3983 -0.4118 10 6 0.2662 -2.3390 -1.2925 11 6 -0.3544 -3.4895 -1.6815 12 6 0.1022 -4.7233 -1.2181 13 7 -0.5327 -5.8939 -1.6246 14 6 -1.8674 -5.9069 -1.8109 15 8 -2.5032 -4.8786 -1.7145 16 6 -2.5700 -7.1991 -2.1387 17 6 -4.0636 -6.9321 -2.3351 18 7 -4.7362 -6.4996 -1.1028 19 6 -4.8023 -8.0538 -3.0893 20 8 -5.4522 -6.9871 -3.8092 21 6 -4.3826 -6.0531 -3.5592 22 6 1.1918 -4.7904 -0.3499 23 6 1.8193 -3.6482 0.0518 24 1 -0.4850 0.8400 -0.0004 25 1 -0.0854 -1.3847 -1.6560 26 1 -1.1986 -3.4453 -2.3536 27 1 -0.0143 -6.7001 -1.7737 28 1 -2.1522 -7.6176 -3.0545 29 1 -2.4318 -7.9057 -1.3204 30 1 -5.7297 -6.4001 -1.2489 31 1 -4.5443 -7.1359 -0.3437 32 1 -4.1517 -8.6714 -3.7085 33 1 -5.4763 -8.6372 -2.4621 34 1 -4.7240 -5.0497 -3.3047 35 1 -3.6040 -6.0598 -4.3219 36 1 1.5399 -5.7493 0.0044 37 1 2.6631 -3.7017 0.7238 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580054902.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:46 Heat of formation + Delta-G solvation = -46.266162 kcal Electronic energy + Delta-G solvation = -20877.318936 eV Core-core repulsion = 17619.579910 eV Total energy + Delta-G solvation = -3257.739025 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.90668 -40.70441 -38.89368 -36.11471 -34.71368 -34.63575 -31.60446 -31.24797 -30.30930 -27.61549 -27.51396 -26.25495 -23.23723 -22.86110 -21.13994 -20.24803 -19.22567 -18.53269 -17.79407 -17.30409 -17.20530 -16.92202 -16.53008 -16.09712 -15.74999 -15.42198 -15.09094 -14.73850 -14.45322 -14.23097 -13.90030 -13.76282 -13.62090 -13.35510 -12.91878 -12.80504 -12.62841 -12.35056 -12.29253 -11.70215 -11.63256 -11.49008 -11.16215 -10.84570 -10.61881 -10.29081 -9.55031 -9.41190 -8.83549 -8.60043 -6.24105 0.88576 1.17129 1.37834 1.47732 1.52617 1.97874 2.21279 2.42183 2.68660 2.78058 3.25329 3.48401 3.72573 3.76984 4.07179 4.27024 4.37602 4.47400 4.52562 4.54908 4.60511 4.76732 4.85048 5.01375 5.04770 5.13513 5.15252 5.25074 5.33699 5.50983 5.71917 5.92016 6.12482 6.16609 6.20314 6.38938 6.54926 6.71542 6.89967 6.95004 7.05261 7.63135 8.34548 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.032401 B = 0.003781 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.950557 B = 7402.868436 C = 7955.333934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.032 3.968 3 Si 0.983 3.017 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.253 1.253 7 C -0.500 4.500 8 H 0.080 0.920 9 C 0.073 3.927 10 C -0.184 4.184 11 C -0.099 4.099 12 C 0.013 3.987 13 N -0.651 5.651 14 C 0.492 3.508 15 O -0.550 6.550 16 C -0.120 4.120 17 C 0.082 3.918 18 N -0.824 5.824 19 C 0.010 3.990 20 O -0.407 6.407 21 C 0.043 3.957 22 C -0.101 4.101 23 C -0.226 4.226 24 H 0.286 0.714 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.416 0.584 28 H 0.133 0.867 29 H 0.126 0.874 30 H 0.349 0.651 31 H 0.354 0.646 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.134 0.866 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.382 -16.807 -4.433 17.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.182 4.182 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.176 1.176 7 C -0.529 4.529 8 H 0.099 0.901 9 C 0.071 3.929 10 C -0.204 4.204 11 C -0.119 4.119 12 C -0.081 4.081 13 N -0.298 5.298 14 C 0.281 3.719 15 O -0.427 6.427 16 C -0.161 4.161 17 C -0.013 4.013 18 N -0.355 5.355 19 C -0.069 4.069 20 O -0.326 6.326 21 C -0.034 4.034 22 C -0.121 4.121 23 C -0.246 4.246 24 H 0.097 0.903 25 H 0.107 0.893 26 H 0.115 0.885 27 H 0.253 0.747 28 H 0.151 0.849 29 H 0.144 0.856 30 H 0.164 0.836 31 H 0.169 0.831 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.152 0.848 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.884 -15.288 -4.507 16.670 hybrid contribution -0.052 0.046 0.074 0.102 sum -4.937 -15.242 -4.432 16.623 Atomic orbital electron populations 1.69961 1.09324 1.30486 1.35685 1.26835 0.95336 1.04818 0.91227 0.85186 0.79307 0.75879 0.79284 1.18884 1.19486 1.17628 1.19816 0.99209 0.92781 1.41126 0.90146 1.17978 0.91664 0.93558 0.89713 1.20833 1.00855 0.96579 1.02133 1.20578 0.98699 0.92493 1.00117 1.17250 0.99686 0.86032 1.05124 1.42952 1.07474 1.11767 1.67578 1.21324 0.81646 0.92031 0.76945 1.90750 1.65921 1.35969 1.50048 1.21813 0.93069 0.94485 1.06684 1.23377 0.93432 0.93073 0.91385 1.58298 1.15915 1.55759 1.05577 1.25111 0.95960 0.91658 0.94154 1.89644 1.39744 1.24718 1.78529 1.24140 0.89088 0.94893 0.95278 1.20434 0.96571 0.98274 0.96859 1.20819 1.04911 0.92504 1.06348 0.90344 0.89265 0.88487 0.74656 0.84917 0.85595 0.83608 0.83082 0.87235 0.87764 0.90968 0.89188 0.84837 0.87453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.49 11.11 21.82 0.24 -46.25 16 2 C 0.03 1.71 5.08 85.24 0.43 2.15 16 3 Si 0.98 39.69 29.60 68.60 2.03 41.72 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 5 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 6 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 7 C -0.50 -27.76 9.02 23.39 0.21 -27.55 16 8 H 0.08 4.23 7.92 -2.91 -0.02 4.21 16 9 C 0.07 4.10 5.56 -21.28 -0.12 3.98 16 10 C -0.18 -10.45 8.64 22.48 0.19 -10.25 16 11 C -0.10 -5.06 8.62 22.14 0.19 -4.87 16 12 C 0.01 0.55 6.30 38.57 0.24 0.79 16 13 N -0.65 -20.13 5.30 -303.12 -1.61 -21.74 16 14 C 0.49 15.21 7.43 87.66 0.65 15.86 16 15 O -0.55 -23.22 12.30 -3.03 -0.04 -23.26 16 16 C -0.12 -2.09 5.32 29.85 0.16 -1.93 16 17 C 0.08 1.66 0.96 4.23 0.00 1.67 16 18 N -0.82 -18.66 8.80 -179.54 -1.58 -20.24 16 19 C 0.01 0.15 8.50 72.28 0.61 0.77 16 20 O -0.41 -9.87 12.36 -148.98 -1.84 -11.71 16 21 C 0.04 1.10 7.51 72.28 0.54 1.65 16 22 C -0.10 -4.23 9.90 22.14 0.22 -4.01 16 23 C -0.23 -10.97 9.74 22.48 0.22 -10.75 16 24 H 0.29 14.61 8.30 -92.71 -0.77 13.84 16 25 H 0.09 5.40 6.28 -2.91 -0.02 5.39 16 26 H 0.10 5.07 6.22 -2.92 -0.02 5.05 16 27 H 0.42 8.79 8.82 -92.70 -0.82 7.97 16 28 H 0.13 1.40 8.06 -2.38 -0.02 1.38 16 29 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.35 7.45 8.85 -89.69 -0.79 6.65 16 31 H 0.35 6.25 9.02 -89.69 -0.81 5.44 16 32 H 0.11 1.07 8.04 -2.39 -0.02 1.05 16 33 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.09 2.09 8.10 -2.39 -0.02 2.07 16 36 H 0.13 4.34 8.06 -2.91 -0.02 4.31 16 37 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -74.82 313.52 -0.52 -75.35 By element: Atomic # 1 Polarization: 39.92 SS G_CDS: -1.29 Total: 38.63 kcal Atomic # 6 Polarization: -36.07 SS G_CDS: 3.56 Total: -32.51 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -2.95 Total: -88.23 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -1.88 Total: -34.96 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Total: -74.82 -0.52 -75.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580054902.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.081 kcal (2) G-P(sol) polarization free energy of solvation -74.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds