Wall clock time and date at job start Mon Mar 30 2020 01:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86797 * 120.00259 * 2 1 4 4 H 1.48497 * 109.47230 * 270.00040 * 3 2 1 5 5 H 1.48505 * 109.47131 * 30.00525 * 3 2 1 6 6 H 1.48499 * 109.46789 * 150.00067 * 3 2 1 7 7 C 1.40226 * 119.99456 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99705 * 197.88033 * 7 2 1 9 9 C 1.41107 * 120.00228 * 17.89212 * 7 2 1 10 10 C 1.40889 * 120.10377 * 204.64313 * 9 7 2 11 11 C 1.36319 * 119.89478 * 179.97438 * 10 9 7 12 12 C 1.40013 * 120.10123 * 0.02562 * 11 10 9 13 13 C 1.47644 * 119.88711 * 179.97438 * 12 11 10 14 14 O 1.21587 * 120.00525 * 0.02562 * 13 12 11 15 15 N 1.34783 * 119.99855 * 180.02562 * 13 12 11 16 16 C 1.46495 * 120.00441 * 180.02562 * 15 13 12 17 17 H 1.08995 * 110.36716 * 32.81473 * 16 15 13 18 18 C 1.54383 * 110.31938 * 270.63430 * 16 15 13 19 19 N 1.48565 * 104.59302 * 217.24639 * 18 16 15 20 20 C 1.48565 * 104.22060 * 39.48505 * 19 18 16 21 21 C 1.54255 * 110.32745 * 154.99599 * 16 15 13 22 22 H 1.09000 * 110.32243 * 359.90079 * 21 16 15 23 23 O 1.42899 * 110.32827 * 237.79088 * 21 16 15 24 24 C 1.40001 * 120.21493 * 0.23621 * 12 11 10 25 25 C 1.36323 * 120.10564 * 359.47416 * 24 12 11 26 26 H 0.97001 * 119.99497 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.05031 * 359.95177 * 10 9 7 28 28 H 1.07994 * 119.94798 * 180.02562 * 11 10 9 29 29 H 0.97010 * 119.99497 * 359.97438 * 15 13 12 30 30 H 1.08998 * 110.41120 * 336.02688 * 18 16 15 31 31 H 1.08997 * 110.41209 * 98.47329 * 18 16 15 32 32 H 1.00901 * 111.00181 * 279.92902 * 19 18 16 33 33 H 1.08998 * 110.41411 * 201.73680 * 20 19 18 34 34 H 1.08996 * 110.51171 * 79.34320 * 20 19 18 35 35 H 0.96697 * 114.00269 * 179.97438 * 23 21 16 36 36 H 1.08000 * 119.94986 * 179.72138 * 24 12 11 37 37 H 1.08005 * 120.05643 * 180.25516 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4881 2.0464 -1.4000 5 1 1.4381 2.6526 0.7002 6 1 3.5381 1.4400 0.7000 7 6 2.0075 -1.2145 -0.0005 8 1 3.0484 -1.2372 0.2866 9 6 1.3531 -2.4067 -0.3765 10 6 1.8263 -3.6495 0.0888 11 6 1.1905 -4.7987 -0.2767 12 6 0.0692 -4.7452 -1.1135 13 6 -0.6154 -5.9928 -1.5068 14 8 -0.2057 -7.0642 -1.1038 15 7 -1.6947 -5.9439 -2.3126 16 6 -2.3745 -7.1817 -2.7025 17 1 -2.3157 -7.9160 -1.8991 18 6 -1.7521 -7.7506 -3.9957 19 7 -2.9041 -8.3033 -4.7538 20 6 -3.9914 -7.3142 -4.5379 21 6 -3.8475 -6.8946 -3.0592 22 1 -4.0653 -5.8329 -2.9425 23 8 -4.7184 -7.6725 -2.2355 24 6 -0.4015 -3.5130 -1.5828 25 6 0.2242 -2.3581 -1.2180 26 1 -0.4849 0.8401 0.0004 27 1 2.6917 -3.6917 0.7336 28 1 1.5523 -5.7517 0.0798 29 1 -2.0218 -5.0890 -2.6338 30 1 -1.2675 -6.9576 -4.5652 31 1 -1.0389 -8.5402 -3.7589 32 1 -3.1664 -9.2117 -4.4015 33 1 -4.9641 -7.7751 -4.7094 34 1 -3.8592 -6.4525 -5.1921 35 1 -5.6582 -7.5329 -2.4150 36 1 -1.2641 -3.4771 -2.2317 37 1 -0.1422 -1.4077 -1.5772 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580055617.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:29 Heat of formation + Delta-G solvation = -66.166790 kcal Electronic energy + Delta-G solvation = -20697.190689 eV Core-core repulsion = 17438.588707 eV Total energy + Delta-G solvation = -3258.601981 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.92713 -38.49122 -37.04376 -35.55175 -33.90983 -33.61214 -30.39379 -29.48238 -28.33046 -28.06881 -25.70466 -22.48064 -22.04212 -21.10162 -20.45845 -19.81720 -17.56463 -17.40992 -17.10333 -16.40308 -15.90694 -15.48264 -14.93612 -14.25423 -14.06560 -13.91393 -13.53896 -13.39459 -13.11856 -12.78338 -12.37122 -12.15155 -12.02829 -11.95858 -11.77262 -11.39701 -11.31366 -10.99961 -10.85455 -10.70398 -10.55656 -10.07099 -9.59393 -9.39169 -9.24229 -9.03382 -8.43409 -7.75897 -7.58116 -7.07126 -4.63873 2.18663 2.89386 2.93602 2.96143 3.00387 3.45079 3.71331 3.80758 3.91516 4.28615 4.47966 4.54186 4.75283 4.80191 5.24688 5.37023 5.40384 5.53454 5.55900 5.74384 5.95030 6.00169 6.14251 6.28638 6.32793 6.73621 6.79415 6.86991 7.01397 7.09032 7.10130 7.37866 7.39958 7.60884 7.74472 7.82566 8.03516 8.15915 8.36345 8.59660 8.71684 9.01079 9.84887 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.031010 B = 0.003659 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.709252 B = 7651.319232 C = 8091.815654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.442 4.442 8 H 0.085 0.915 9 C 0.129 3.871 10 C -0.238 4.238 11 C -0.021 4.021 12 C -0.285 4.285 13 C 0.574 3.426 14 O -0.572 6.572 15 N -0.732 5.732 16 C 0.122 3.878 17 H 0.102 0.898 18 C 0.031 3.969 19 N -0.663 5.663 20 C 0.012 3.988 21 C 0.058 3.942 22 H 0.071 0.929 23 O -0.559 6.559 24 C -0.062 4.062 25 C -0.178 4.178 26 H 0.287 0.713 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.397 0.603 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.340 0.660 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.379 0.621 36 H 0.088 0.912 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.203 -5.038 -7.244 12.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.470 4.470 8 H 0.104 0.896 9 C 0.125 3.875 10 C -0.258 4.258 11 C -0.040 4.040 12 C -0.290 4.290 13 C 0.370 3.630 14 O -0.454 6.454 15 N -0.385 5.385 16 C 0.014 3.986 17 H 0.120 0.880 18 C -0.100 4.100 19 N -0.290 5.290 20 C -0.119 4.119 21 C -0.003 4.003 22 H 0.089 0.911 23 O -0.364 6.364 24 C -0.082 4.082 25 C -0.197 4.197 26 H 0.098 0.902 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.233 0.767 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.156 0.844 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.226 0.774 36 H 0.106 0.894 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.350 -5.657 -7.400 11.865 hybrid contribution -0.797 1.349 0.642 1.693 sum -8.147 -4.309 -6.757 11.428 Atomic orbital electron populations 1.69747 1.07937 1.30081 1.31671 1.26108 0.94815 1.01921 0.91857 0.86194 0.80593 0.79747 0.79672 1.18902 1.20002 1.18245 1.19876 0.98485 0.91204 1.37389 0.89642 1.17793 0.90359 0.92187 0.87118 1.20721 1.04612 0.92619 1.07837 1.20364 0.92848 0.97194 0.93611 1.18853 1.04604 0.90881 1.14619 1.18619 0.78586 0.89735 0.76109 1.90637 1.66264 1.31681 1.56802 1.45857 1.31821 1.07983 1.52878 1.22039 0.88588 0.89135 0.98843 0.88021 1.23502 0.94095 1.00592 0.91762 1.63311 1.05124 1.05058 1.55482 1.23709 0.95995 0.97490 0.94694 1.23428 0.90787 0.95320 0.90815 0.91118 1.86568 1.19905 1.67774 1.62193 1.20452 0.97337 0.92597 0.97765 1.20975 0.99933 0.96883 1.01943 0.90209 0.88334 0.88068 0.76725 0.89458 0.89803 0.84430 0.90151 0.89288 0.77398 0.89439 0.86187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.26 10.95 55.56 0.61 -17.65 16 2 C 0.07 1.71 5.14 -17.31 -0.09 1.62 16 3 Si 0.91 17.07 29.60 -169.99 -5.03 12.04 16 4 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 5 H -0.28 -5.03 7.11 56.52 0.40 -4.62 16 6 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 7 C -0.44 -10.90 9.04 -37.75 -0.34 -11.24 16 8 H 0.09 2.01 7.91 -52.48 -0.42 1.60 16 9 C 0.13 3.25 5.58 -106.80 -0.60 2.66 16 10 C -0.24 -5.75 9.73 -39.27 -0.38 -6.13 16 11 C -0.02 -0.49 9.52 -39.61 -0.38 -0.87 16 12 C -0.29 -6.47 5.89 -104.73 -0.62 -7.09 16 13 C 0.57 12.17 7.76 -12.42 -0.10 12.08 16 14 O -0.57 -13.63 15.97 5.29 0.08 -13.54 16 15 N -0.73 -12.14 5.01 -53.47 -0.27 -12.41 16 16 C 0.12 1.77 3.22 -66.55 -0.21 1.56 16 17 H 0.10 1.78 7.40 -51.93 -0.38 1.39 16 18 C 0.03 0.41 7.18 -2.18 -0.02 0.40 16 19 N -0.66 -7.29 7.62 -109.65 -0.84 -8.13 16 20 C 0.01 0.11 7.21 -2.18 -0.02 0.09 16 21 C 0.06 0.64 4.18 -25.35 -0.11 0.53 16 22 H 0.07 0.74 7.67 -51.93 -0.40 0.34 16 23 O -0.56 -6.21 13.26 -35.23 -0.47 -6.68 16 24 C -0.06 -1.36 9.47 -39.61 -0.38 -1.74 16 25 C -0.18 -4.31 8.63 -39.27 -0.34 -4.65 16 26 H 0.29 6.09 8.29 -40.82 -0.34 5.75 16 27 H 0.10 2.22 8.06 -52.48 -0.42 1.79 16 28 H 0.10 2.31 7.63 -52.49 -0.40 1.91 16 29 H 0.40 5.83 6.36 -40.82 -0.26 5.57 16 30 H 0.09 1.19 8.06 -51.93 -0.42 0.77 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.34 3.44 8.92 -39.29 -0.35 3.09 16 33 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.38 2.33 9.12 45.56 0.42 2.74 16 36 H 0.09 1.60 6.37 -52.49 -0.33 1.27 16 37 H 0.12 2.93 6.16 -52.48 -0.32 2.61 16 LS Contribution 312.61 15.07 4.71 4.71 Total: -1.00 -29.38 312.61 -8.45 -37.84 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -3.69 Total: 16.60 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -3.56 Total: -12.78 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: -0.50 Total: -38.19 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.38 Total: -20.22 kcal Atomic # 14 Polarization: 17.07 SS G_CDS: -5.03 Total: 12.04 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.38 -8.45 -37.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055617.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.331 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds