Wall clock time and date at job start Mon Mar 30 2020 01:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86797 * 120.00259 * 2 1 4 4 H 1.48497 * 109.47230 * 270.00040 * 3 2 1 5 5 H 1.48505 * 109.47131 * 30.00525 * 3 2 1 6 6 H 1.48499 * 109.46789 * 150.00067 * 3 2 1 7 7 C 1.40226 * 119.99456 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99705 * 197.88033 * 7 2 1 9 9 C 1.41107 * 120.00228 * 17.89212 * 7 2 1 10 10 C 1.40889 * 120.10377 * 204.64313 * 9 7 2 11 11 C 1.36319 * 119.89478 * 179.97438 * 10 9 7 12 12 C 1.40013 * 120.10123 * 0.02562 * 11 10 9 13 13 C 1.47644 * 119.88711 * 179.97438 * 12 11 10 14 14 O 1.21587 * 120.00525 * 0.02562 * 13 12 11 15 15 N 1.34783 * 119.99855 * 180.02562 * 13 12 11 16 16 C 1.46495 * 120.00441 * 180.02562 * 15 13 12 17 17 H 1.08995 * 110.36716 * 32.81473 * 16 15 13 18 18 C 1.54383 * 110.31938 * 270.63430 * 16 15 13 19 19 N 1.48565 * 104.59302 * 217.24639 * 18 16 15 20 20 C 1.48565 * 104.22060 * 39.48505 * 19 18 16 21 21 C 1.54255 * 110.32745 * 154.99599 * 16 15 13 22 22 H 1.09000 * 110.32243 * 359.90079 * 21 16 15 23 23 O 1.42899 * 110.32827 * 237.79088 * 21 16 15 24 24 C 1.40001 * 120.21493 * 0.23621 * 12 11 10 25 25 C 1.36323 * 120.10564 * 359.47416 * 24 12 11 26 26 H 0.97001 * 119.99497 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.05031 * 359.95177 * 10 9 7 28 28 H 1.07994 * 119.94798 * 180.02562 * 11 10 9 29 29 H 0.97010 * 119.99497 * 359.97438 * 15 13 12 30 30 H 1.08998 * 110.41120 * 336.02688 * 18 16 15 31 31 H 1.08997 * 110.41209 * 98.47329 * 18 16 15 32 32 H 1.00901 * 111.00181 * 279.92902 * 19 18 16 33 33 H 1.08998 * 110.41411 * 201.73680 * 20 19 18 34 34 H 1.08996 * 110.51171 * 79.34320 * 20 19 18 35 35 H 0.96697 * 114.00269 * 179.97438 * 23 21 16 36 36 H 1.08000 * 119.94986 * 179.72138 * 24 12 11 37 37 H 1.08005 * 120.05643 * 180.25516 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4881 2.0464 -1.4000 5 1 1.4381 2.6526 0.7002 6 1 3.5381 1.4400 0.7000 7 6 2.0075 -1.2145 -0.0005 8 1 3.0484 -1.2372 0.2866 9 6 1.3531 -2.4067 -0.3765 10 6 1.8263 -3.6495 0.0888 11 6 1.1905 -4.7987 -0.2767 12 6 0.0692 -4.7452 -1.1135 13 6 -0.6154 -5.9928 -1.5068 14 8 -0.2057 -7.0642 -1.1038 15 7 -1.6947 -5.9439 -2.3126 16 6 -2.3745 -7.1817 -2.7025 17 1 -2.3157 -7.9160 -1.8991 18 6 -1.7521 -7.7506 -3.9957 19 7 -2.9041 -8.3033 -4.7538 20 6 -3.9914 -7.3142 -4.5379 21 6 -3.8475 -6.8946 -3.0592 22 1 -4.0653 -5.8329 -2.9425 23 8 -4.7184 -7.6725 -2.2355 24 6 -0.4015 -3.5130 -1.5828 25 6 0.2242 -2.3581 -1.2180 26 1 -0.4849 0.8401 0.0004 27 1 2.6917 -3.6917 0.7336 28 1 1.5523 -5.7517 0.0798 29 1 -2.0218 -5.0890 -2.6338 30 1 -1.2675 -6.9576 -4.5652 31 1 -1.0389 -8.5402 -3.7589 32 1 -3.1664 -9.2117 -4.4015 33 1 -4.9641 -7.7751 -4.7094 34 1 -3.8592 -6.4525 -5.1921 35 1 -5.6582 -7.5329 -2.4150 36 1 -1.2641 -3.4771 -2.2317 37 1 -0.1422 -1.4077 -1.5772 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580055617.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:28 Heat of formation + Delta-G solvation = -89.723563 kcal Electronic energy + Delta-G solvation = -20698.212187 eV Core-core repulsion = 17438.588707 eV Total energy + Delta-G solvation = -3259.623480 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.23324 -39.88881 -38.75455 -36.48554 -35.68879 -35.01929 -32.12822 -31.31715 -29.40043 -29.17750 -27.40341 -23.96384 -23.15397 -22.84844 -21.67606 -21.42799 -19.37914 -18.68529 -18.23094 -17.48469 -17.22845 -17.01632 -16.20543 -15.78381 -15.76043 -15.24898 -15.04923 -14.64742 -14.41088 -14.33803 -13.90190 -13.69774 -13.49157 -13.21083 -12.90205 -12.85319 -12.68749 -12.63369 -12.38870 -11.88028 -11.76927 -11.44060 -11.37993 -11.13637 -10.76790 -10.46969 -9.62878 -9.55640 -9.38702 -8.80755 -6.49862 0.41353 1.13722 1.38968 1.43314 1.53498 2.08956 2.15370 2.17371 2.75932 3.05277 3.31589 3.60156 3.67878 3.84459 3.92233 4.18494 4.24504 4.29321 4.42415 4.43471 4.53080 4.85155 4.87647 4.90942 4.91503 5.02080 5.13951 5.28369 5.35032 5.56659 5.61675 5.80146 5.92202 5.97888 6.21287 6.25869 6.52370 6.62870 6.75764 6.80124 6.87317 7.38030 8.14524 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.031010 B = 0.003659 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.709252 B = 7651.319232 C = 8091.815654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.039 3.961 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.258 1.258 7 C -0.473 4.473 8 H 0.085 0.915 9 C 0.102 3.898 10 C -0.253 4.253 11 C -0.033 4.033 12 C -0.295 4.295 13 C 0.574 3.426 14 O -0.604 6.604 15 N -0.713 5.713 16 C 0.114 3.886 17 H 0.069 0.931 18 C 0.038 3.962 19 N -0.662 5.662 20 C 0.018 3.982 21 C 0.066 3.934 22 H 0.083 0.917 23 O -0.578 6.578 24 C -0.052 4.052 25 C -0.197 4.197 26 H 0.298 0.702 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.409 0.591 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.346 0.654 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.401 0.599 36 H 0.125 0.875 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.814 -4.090 -8.612 13.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.180 4.180 3 Si 0.808 3.192 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.182 1.182 7 C -0.500 4.500 8 H 0.103 0.897 9 C 0.099 3.901 10 C -0.272 4.272 11 C -0.052 4.052 12 C -0.299 4.299 13 C 0.368 3.632 14 O -0.488 6.488 15 N -0.366 5.366 16 C 0.007 3.993 17 H 0.087 0.913 18 C -0.093 4.093 19 N -0.289 5.289 20 C -0.112 4.112 21 C 0.005 3.995 22 H 0.101 0.899 23 O -0.387 6.387 24 C -0.071 4.071 25 C -0.217 4.217 26 H 0.109 0.891 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.247 0.753 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.162 0.838 33 H 0.126 0.874 34 H 0.118 0.882 35 H 0.253 0.747 36 H 0.143 0.857 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.025 -4.719 -8.797 13.457 hybrid contribution -0.391 0.957 1.072 1.489 sum -9.416 -3.761 -7.725 12.747 Atomic orbital electron populations 1.69760 1.09225 1.31684 1.31338 1.26919 0.95547 1.04789 0.90767 0.85098 0.79064 0.75173 0.79873 1.18240 1.18895 1.18209 1.20141 0.98806 0.92265 1.38795 0.89680 1.18144 0.91287 0.92817 0.87894 1.20851 1.05188 0.92749 1.08449 1.20509 0.93520 0.97044 0.94148 1.19129 1.04457 0.92067 1.14269 1.18442 0.79518 0.88607 0.76642 1.90619 1.67467 1.32489 1.58272 1.45647 1.30276 1.09540 1.51135 1.22203 0.91369 0.87339 0.98389 0.91263 1.23325 0.94738 1.00081 0.91155 1.63315 1.05133 1.05775 1.54698 1.23792 0.96578 0.97576 0.93217 1.23293 0.88363 0.96019 0.91791 0.89875 1.86519 1.21747 1.67897 1.62552 1.20714 0.97770 0.91373 0.97221 1.21021 1.00474 0.97450 1.02722 0.89110 0.87832 0.88066 0.75336 0.89695 0.91152 0.83837 0.87445 0.88200 0.74745 0.85718 0.86675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.49 10.95 21.87 0.24 -37.25 16 2 C 0.04 1.79 5.14 85.35 0.44 2.23 16 3 Si 0.99 34.28 29.60 68.60 2.03 36.31 16 4 H -0.26 -8.65 7.11 99.48 0.71 -7.95 16 5 H -0.26 -8.67 7.11 99.48 0.71 -7.97 16 6 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 7 C -0.47 -23.72 9.04 23.46 0.21 -23.51 16 8 H 0.09 4.11 7.91 -2.91 -0.02 4.08 16 9 C 0.10 5.26 5.58 -21.28 -0.12 5.14 16 10 C -0.25 -12.58 9.73 22.47 0.22 -12.36 16 11 C -0.03 -1.60 9.52 22.25 0.21 -1.38 16 12 C -0.29 -13.44 5.89 -19.94 -0.12 -13.56 16 13 C 0.57 24.32 7.76 86.73 0.67 24.99 16 14 O -0.60 -29.32 15.97 -3.99 -0.06 -29.38 16 15 N -0.71 -22.84 5.01 -441.35 -2.21 -25.06 16 16 C 0.11 3.21 3.22 45.89 0.15 3.36 16 17 H 0.07 2.44 7.40 -2.39 -0.02 2.42 16 18 C 0.04 0.97 7.18 86.45 0.62 1.59 16 19 N -0.66 -13.07 7.62 -500.83 -3.82 -16.89 16 20 C 0.02 0.27 7.21 86.45 0.62 0.90 16 21 C 0.07 1.29 4.18 31.49 0.13 1.43 16 22 H 0.08 1.44 7.67 -2.39 -0.02 1.42 16 23 O -0.58 -11.40 13.26 -148.98 -1.98 -13.38 16 24 C -0.05 -2.23 9.47 22.25 0.21 -2.02 16 25 C -0.20 -9.61 8.63 22.47 0.19 -9.42 16 26 H 0.30 12.39 8.29 -92.71 -0.77 11.62 16 27 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 28 H 0.10 4.79 7.63 -2.91 -0.02 4.77 16 29 H 0.41 11.07 6.36 -92.70 -0.59 10.48 16 30 H 0.08 2.20 8.06 -2.39 -0.02 2.18 16 31 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.35 6.30 8.92 -89.69 -0.80 5.50 16 33 H 0.11 1.08 8.08 -2.39 -0.02 1.06 16 34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.40 3.63 9.12 -74.06 -0.68 2.96 16 36 H 0.13 4.29 6.37 -2.91 -0.02 4.27 16 37 H 0.12 5.65 6.16 -2.91 -0.02 5.64 16 Total: -1.00 -64.57 312.61 -3.29 -67.86 By element: Atomic # 1 Polarization: 41.34 SS G_CDS: -0.93 Total: 40.41 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: 3.45 Total: -22.62 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -5.79 Total: -79.19 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: -2.04 Total: -42.76 kcal Atomic # 14 Polarization: 34.28 SS G_CDS: 2.03 Total: 36.31 kcal Total: -64.57 -3.29 -67.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055617.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.867 kcal (2) G-P(sol) polarization free energy of solvation -64.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds