Wall clock time and date at job start Mon Mar 30 2020 02:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 120.00063 * 2 1 4 4 H 1.48505 * 109.47069 * 274.98516 * 3 2 1 5 5 H 1.48502 * 109.47508 * 34.98016 * 3 2 1 6 6 H 1.48497 * 109.47231 * 154.98363 * 3 2 1 7 7 C 1.37879 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00025 * 188.67208 * 7 2 1 9 9 C 1.50696 * 120.00097 * 8.67288 * 7 2 1 10 10 H 1.08996 * 109.49822 * 305.76378 * 9 7 2 11 11 C 1.53043 * 109.49867 * 185.69769 * 9 7 2 12 12 C 1.53035 * 109.54205 * 178.68295 * 11 9 7 13 13 C 1.53198 * 109.30975 * 61.36278 * 12 11 9 14 14 N 1.46915 * 108.89618 * 305.29359 * 13 12 11 15 15 C 1.34780 * 120.63558 * 233.67534 * 14 13 12 16 16 O 1.21544 * 120.00346 * 169.29093 * 15 14 13 17 17 C 1.47927 * 119.99433 * 349.28467 * 15 14 13 18 18 C 1.39477 * 119.65538 * 172.38365 * 17 15 14 19 19 C 1.38323 * 119.13026 * 179.71109 * 18 17 15 20 20 C 1.39229 * 118.44747 * 0.55312 * 19 18 17 21 21 O 1.35723 * 120.38236 * 179.70742 * 20 19 18 22 22 C 1.39234 * 119.23362 * 359.73107 * 20 19 18 23 23 N 1.31381 * 120.80806 * 359.97438 * 22 20 19 24 24 C 1.47213 * 118.55432 * 53.54139 * 14 13 12 25 25 H 0.97003 * 120.00355 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.45820 * 58.66005 * 11 9 7 27 27 H 1.09000 * 109.45038 * 298.69842 * 11 9 7 28 28 H 1.09001 * 109.49785 * 301.41800 * 12 11 9 29 29 H 1.09000 * 109.50291 * 181.32018 * 12 11 9 30 30 H 1.08996 * 109.58087 * 65.15955 * 13 12 11 31 31 H 1.09003 * 109.58548 * 185.43534 * 13 12 11 32 32 H 1.07995 * 120.42932 * 0.02562 * 18 17 15 33 33 H 1.07998 * 120.77349 * 180.26290 * 19 18 17 34 34 H 0.96702 * 113.99957 * 270.02395 * 21 20 19 35 35 H 1.08001 * 119.59945 * 179.97438 * 22 20 19 36 36 H 1.08995 * 109.53529 * 186.67110 * 24 14 13 37 37 H 1.09001 * 109.67690 * 66.36446 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.3913 2.1072 -1.3948 5 1 1.5032 2.6200 0.8026 6 1 3.5953 1.4120 0.5920 7 6 2.0045 -1.1941 0.0005 8 1 3.0752 -1.1994 0.1416 9 6 1.2639 -2.4918 -0.1957 10 1 0.4592 -2.5656 0.5357 11 6 2.2302 -3.6643 -0.0120 12 6 1.4723 -4.9832 -0.1787 13 6 0.8869 -5.0560 -1.5925 14 7 0.0690 -3.8590 -1.8310 15 6 -1.2100 -3.9717 -2.2409 16 8 -1.9341 -2.9954 -2.2483 17 6 -1.7325 -5.2834 -2.6819 18 6 -3.0931 -5.4289 -2.9521 19 6 -3.5689 -6.6588 -3.3696 20 6 -2.6666 -7.7119 -3.4929 21 8 -3.0920 -8.9369 -3.8938 22 6 -1.3230 -7.4941 -3.1998 23 7 -0.9022 -6.3117 -2.8112 24 6 0.6762 -2.5364 -1.6097 25 1 -0.4851 0.8400 -0.0004 26 1 2.6686 -3.6208 0.9850 27 1 3.0213 -3.6031 -0.7594 28 1 0.6652 -5.0339 0.5522 29 1 2.1561 -5.8179 -0.0246 30 1 1.6963 -5.0968 -2.3214 31 1 0.2661 -5.9472 -1.6856 32 1 -3.7653 -4.5909 -2.8417 33 1 -4.6167 -6.8000 -3.5901 34 1 -3.3625 -9.5162 -3.1682 35 1 -0.6181 -8.3070 -3.2931 36 1 -0.0855 -1.7637 -1.7133 37 1 1.4680 -2.3691 -2.3399 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584317755.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:00 Heat of formation + Delta-G solvation = -28.941440 kcal Electronic energy + Delta-G solvation = -21387.708744 eV Core-core repulsion = 18130.720975 eV Total energy + Delta-G solvation = -3256.987769 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.87248 -39.08473 -37.39092 -36.63016 -33.43423 -32.47719 -31.67920 -30.56789 -29.56205 -25.41679 -24.96649 -23.87625 -23.20881 -21.72939 -20.31377 -18.87131 -18.69794 -17.28398 -16.85330 -16.13631 -15.90813 -15.19247 -14.80476 -14.70021 -14.42394 -13.88827 -13.63733 -13.43941 -13.16331 -12.84229 -12.65980 -12.52690 -12.07891 -11.88130 -11.68396 -10.93941 -10.87928 -10.48755 -10.41212 -10.22694 -10.03901 -9.86739 -9.65344 -9.25127 -9.07667 -9.00180 -8.61665 -8.36536 -7.69954 -5.98552 -4.03635 0.48276 0.98479 2.90317 3.32961 3.40978 3.43109 3.53443 3.73165 3.88838 4.21455 4.46386 4.55636 4.74342 4.87820 5.10157 5.33051 5.51974 5.67329 5.73472 5.76326 5.78959 5.96332 6.15361 6.30654 6.41798 6.58887 6.67993 6.78113 6.92268 7.02658 7.12121 7.16463 7.29400 7.57501 7.64737 7.89444 8.00927 8.22440 8.41666 8.76490 9.01178 9.60631 11.09109 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.034247 B = 0.004453 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.402482 B = 6287.023768 C = 6923.283214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.065 3.935 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.039 3.961 10 H 0.036 0.964 11 C -0.111 4.111 12 C -0.135 4.135 13 C 0.081 3.919 14 N -0.582 5.582 15 C 0.554 3.446 16 O -0.531 6.531 17 C 0.084 3.916 18 C -0.097 4.097 19 C -0.108 4.108 20 C 0.067 3.933 21 O -0.492 6.492 22 C 0.070 3.930 23 N -0.429 5.429 24 C 0.116 3.884 25 H 0.262 0.738 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.129 0.871 32 H 0.154 0.846 33 H 0.145 0.855 34 H 0.394 0.606 35 H 0.166 0.834 36 H 0.104 0.896 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.879 -17.661 -5.335 19.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.054 0.946 11 C -0.149 4.149 12 C -0.174 4.174 13 C -0.042 4.042 14 N -0.312 5.312 15 C 0.339 3.661 16 O -0.407 6.407 17 C -0.054 4.054 18 C -0.118 4.118 19 C -0.134 4.134 20 C 0.020 3.980 21 O -0.302 6.302 22 C -0.090 4.090 23 N -0.142 5.142 24 C -0.004 4.004 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.145 0.855 32 H 0.171 0.829 33 H 0.163 0.837 34 H 0.251 0.749 35 H 0.183 0.817 36 H 0.122 0.878 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.422 -16.634 -5.708 18.134 hybrid contribution -0.449 0.522 0.226 0.725 sum -4.871 -16.112 -5.482 17.703 Atomic orbital electron populations 1.69990 1.05821 1.26784 1.48855 1.25047 0.94788 0.99207 0.94814 0.86642 0.79979 0.83758 0.78027 1.20653 1.21281 1.19878 1.21066 0.93922 0.90489 1.50596 0.92362 1.18960 0.94377 0.92386 0.92267 0.94564 1.21640 0.98546 0.94378 1.00317 1.21997 0.99692 0.98718 0.96959 1.22691 0.95926 0.89792 0.95754 1.48385 1.10499 1.09591 1.62744 1.17795 0.82746 0.86265 0.79261 1.90815 1.56618 1.37893 1.55418 1.21696 0.91079 0.93851 0.98753 1.22111 0.95782 0.98080 0.95819 1.21933 1.00921 0.92650 0.97918 1.19730 0.93095 0.86623 0.98535 1.84782 1.85949 1.23066 1.36354 1.23381 0.93862 0.95835 0.95935 1.67873 1.36485 0.99327 1.10552 1.22312 0.97684 0.81308 0.99145 0.92770 0.93151 0.93343 0.92606 0.92381 0.92553 0.85455 0.82875 0.83679 0.74919 0.81668 0.87807 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.01 12.19 55.43 0.68 -25.34 16 2 C 0.06 1.82 5.25 -17.82 -0.09 1.73 16 3 Si 0.89 21.47 29.55 -169.99 -5.02 16.45 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.39 8.48 -34.44 -0.29 -14.68 16 8 H 0.06 1.57 7.76 -52.49 -0.41 1.17 16 9 C 0.04 0.99 2.11 -91.65 -0.19 0.80 16 10 H 0.04 1.04 8.09 -51.93 -0.42 0.62 16 11 C -0.11 -2.30 5.11 -26.69 -0.14 -2.44 16 12 C -0.14 -2.36 6.08 -26.61 -0.16 -2.52 16 13 C 0.08 1.41 5.81 -3.71 -0.02 1.39 16 14 N -0.58 -12.26 2.98 -173.62 -0.52 -12.78 16 15 C 0.55 11.55 7.63 -12.29 -0.09 11.46 16 16 O -0.53 -12.90 15.81 5.33 0.08 -12.82 16 17 C 0.08 1.35 6.58 -83.02 -0.55 0.80 16 18 C -0.10 -1.29 9.62 -39.09 -0.38 -1.67 16 19 C -0.11 -1.10 10.12 -39.18 -0.40 -1.50 16 20 C 0.07 0.65 6.75 -38.84 -0.26 0.39 16 21 O -0.49 -3.69 13.52 -18.87 -0.26 -3.95 16 22 C 0.07 0.74 11.14 -17.37 -0.19 0.54 16 23 N -0.43 -6.00 6.14 -9.67 -0.06 -6.06 16 24 C 0.12 2.85 5.51 -3.55 -0.02 2.83 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.13 1.99 4.15 -79.49 -0.33 1.66 16 32 H 0.15 2.02 7.65 -52.49 -0.40 1.62 16 33 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.39 0.98 9.06 45.56 0.41 1.39 16 35 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.10 2.94 5.95 -51.93 -0.31 2.63 16 37 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 307.64 15.07 4.64 4.64 Total: -1.00 -33.34 307.64 -7.22 -40.56 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -3.97 Total: 2.17 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -2.79 Total: -2.87 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.10 Total: -44.18 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.17 Total: -16.77 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.34 -7.22 -40.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584317755.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.619 kcal (2) G-P(sol) polarization free energy of solvation -33.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds