Wall clock time and date at job start Mon Mar 30 2020 02:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 120.00063 * 2 1 4 4 H 1.48505 * 109.47069 * 274.98516 * 3 2 1 5 5 H 1.48502 * 109.47508 * 34.98016 * 3 2 1 6 6 H 1.48497 * 109.47231 * 154.98363 * 3 2 1 7 7 C 1.37879 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00025 * 188.67208 * 7 2 1 9 9 C 1.50696 * 120.00097 * 8.67288 * 7 2 1 10 10 H 1.08996 * 109.49822 * 305.76378 * 9 7 2 11 11 C 1.53043 * 109.49867 * 185.69769 * 9 7 2 12 12 C 1.53035 * 109.54205 * 178.68295 * 11 9 7 13 13 C 1.53198 * 109.30975 * 61.36278 * 12 11 9 14 14 N 1.46915 * 108.89618 * 305.29359 * 13 12 11 15 15 C 1.34780 * 120.63558 * 233.67534 * 14 13 12 16 16 O 1.21544 * 120.00346 * 169.29093 * 15 14 13 17 17 C 1.47927 * 119.99433 * 349.28467 * 15 14 13 18 18 C 1.39477 * 119.65538 * 172.38365 * 17 15 14 19 19 C 1.38323 * 119.13026 * 179.71109 * 18 17 15 20 20 C 1.39229 * 118.44747 * 0.55312 * 19 18 17 21 21 O 1.35723 * 120.38236 * 179.70742 * 20 19 18 22 22 C 1.39234 * 119.23362 * 359.73107 * 20 19 18 23 23 N 1.31381 * 120.80806 * 359.97438 * 22 20 19 24 24 C 1.47213 * 118.55432 * 53.54139 * 14 13 12 25 25 H 0.97003 * 120.00355 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.45820 * 58.66005 * 11 9 7 27 27 H 1.09000 * 109.45038 * 298.69842 * 11 9 7 28 28 H 1.09001 * 109.49785 * 301.41800 * 12 11 9 29 29 H 1.09000 * 109.50291 * 181.32018 * 12 11 9 30 30 H 1.08996 * 109.58087 * 65.15955 * 13 12 11 31 31 H 1.09003 * 109.58548 * 185.43534 * 13 12 11 32 32 H 1.07995 * 120.42932 * 0.02562 * 18 17 15 33 33 H 1.07998 * 120.77349 * 180.26290 * 19 18 17 34 34 H 0.96702 * 113.99957 * 270.02395 * 21 20 19 35 35 H 1.08001 * 119.59945 * 179.97438 * 22 20 19 36 36 H 1.08995 * 109.53529 * 186.67110 * 24 14 13 37 37 H 1.09001 * 109.67690 * 66.36446 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.3913 2.1072 -1.3948 5 1 1.5032 2.6200 0.8026 6 1 3.5953 1.4120 0.5920 7 6 2.0045 -1.1941 0.0005 8 1 3.0752 -1.1994 0.1416 9 6 1.2639 -2.4918 -0.1957 10 1 0.4592 -2.5656 0.5357 11 6 2.2302 -3.6643 -0.0120 12 6 1.4723 -4.9832 -0.1787 13 6 0.8869 -5.0560 -1.5925 14 7 0.0690 -3.8590 -1.8310 15 6 -1.2100 -3.9717 -2.2409 16 8 -1.9341 -2.9954 -2.2483 17 6 -1.7325 -5.2834 -2.6819 18 6 -3.0931 -5.4289 -2.9521 19 6 -3.5689 -6.6588 -3.3696 20 6 -2.6666 -7.7119 -3.4929 21 8 -3.0920 -8.9369 -3.8938 22 6 -1.3230 -7.4941 -3.1998 23 7 -0.9022 -6.3117 -2.8112 24 6 0.6762 -2.5364 -1.6097 25 1 -0.4851 0.8400 -0.0004 26 1 2.6686 -3.6208 0.9850 27 1 3.0213 -3.6031 -0.7594 28 1 0.6652 -5.0339 0.5522 29 1 2.1561 -5.8179 -0.0246 30 1 1.6963 -5.0968 -2.3214 31 1 0.2661 -5.9472 -1.6856 32 1 -3.7653 -4.5909 -2.8417 33 1 -4.6167 -6.8000 -3.5901 34 1 -3.3625 -9.5162 -3.1682 35 1 -0.6181 -8.3070 -3.2931 36 1 -0.0855 -1.7637 -1.7133 37 1 1.4680 -2.3691 -2.3399 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584317755.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:00 Heat of formation + Delta-G solvation = -53.422912 kcal Electronic energy + Delta-G solvation = -21388.770340 eV Core-core repulsion = 18130.720975 eV Total energy + Delta-G solvation = -3258.049365 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.97003 -40.45012 -38.46533 -38.09399 -35.30687 -33.71550 -33.21219 -31.87979 -31.11050 -27.16649 -26.65311 -24.86206 -24.41905 -23.42562 -21.83545 -20.37732 -19.51427 -18.76322 -18.23103 -17.86600 -16.84006 -16.73787 -16.38690 -16.14401 -15.80169 -15.33005 -14.95917 -14.68405 -14.44479 -14.39491 -14.26854 -13.80518 -13.74672 -13.48080 -12.91519 -12.85421 -12.49758 -12.32368 -12.14415 -11.77473 -11.63515 -11.33126 -11.08810 -10.95081 -10.86789 -10.53346 -10.03441 -9.91210 -9.40289 -8.14734 -6.27894 -0.51861 0.11587 1.39555 1.41133 1.52028 1.65215 2.07544 2.41967 2.67349 2.92350 3.15023 3.18379 3.65323 3.84252 3.94307 4.09680 4.23894 4.25812 4.38519 4.61900 4.70140 4.75000 4.84148 4.89115 4.97036 5.05383 5.06912 5.23360 5.29306 5.33063 5.48500 5.57103 5.70568 5.86760 5.91879 6.31443 6.47350 6.65886 6.78668 6.85479 7.17324 7.41075 8.92499 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.034247 B = 0.004453 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.402482 B = 6287.023768 C = 6923.283214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.011 3.989 3 Si 0.957 3.043 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.260 1.260 7 C -0.537 4.537 8 H 0.063 0.937 9 C 0.038 3.962 10 H -0.011 1.011 11 C -0.105 4.105 12 C -0.128 4.128 13 C 0.080 3.920 14 N -0.590 5.590 15 C 0.545 3.455 16 O -0.585 6.585 17 C 0.051 3.949 18 C -0.100 4.100 19 C -0.101 4.101 20 C 0.098 3.902 21 O -0.490 6.490 22 C 0.073 3.927 23 N -0.441 5.441 24 C 0.129 3.871 25 H 0.260 0.740 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.042 0.958 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.154 0.846 32 H 0.142 0.858 33 H 0.177 0.823 34 H 0.422 0.578 35 H 0.202 0.798 36 H 0.057 0.943 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.198 -21.169 -6.285 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.188 4.188 3 Si 0.782 3.218 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.184 1.184 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.019 3.981 10 H 0.007 0.993 11 C -0.143 4.143 12 C -0.166 4.166 13 C -0.041 4.041 14 N -0.320 5.320 15 C 0.333 3.667 16 O -0.465 6.465 17 C -0.084 4.084 18 C -0.121 4.121 19 C -0.127 4.127 20 C 0.051 3.949 21 O -0.304 6.304 22 C -0.088 4.088 23 N -0.154 5.154 24 C 0.007 3.993 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.120 0.880 30 H 0.087 0.913 31 H 0.170 0.830 32 H 0.160 0.840 33 H 0.194 0.806 34 H 0.284 0.716 35 H 0.219 0.781 36 H 0.075 0.925 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.723 -20.197 -6.637 21.583 hybrid contribution -0.750 1.387 0.461 1.643 sum -4.473 -18.809 -6.177 20.297 Atomic orbital electron populations 1.70167 1.07669 1.27390 1.50253 1.25911 0.95470 1.03016 0.94451 0.85561 0.79017 0.79124 0.78107 1.20204 1.21186 1.18415 1.21493 0.94270 0.91760 1.50054 0.91876 1.18882 0.93907 0.94002 0.91299 0.99250 1.21538 0.97869 0.94282 1.00621 1.21974 0.99721 0.98154 0.96733 1.23025 0.96250 0.88999 0.95847 1.48436 1.11301 1.09259 1.62994 1.18582 0.82102 0.87937 0.78037 1.90762 1.57869 1.40406 1.57505 1.20900 0.92266 0.92420 1.02801 1.22075 0.94501 0.99367 0.96138 1.22194 1.02630 0.91171 0.96698 1.19689 0.92547 0.87380 0.95315 1.84729 1.85756 1.22201 1.37712 1.23921 0.95216 0.95027 0.94658 1.67542 1.36494 0.99904 1.11503 1.21753 0.96212 0.82649 0.98703 0.93107 0.93095 0.92364 0.93899 0.87953 0.91312 0.83039 0.83993 0.80572 0.71609 0.78109 0.92461 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.57 12.19 21.45 0.26 -57.31 16 2 C 0.01 0.65 5.25 84.66 0.44 1.09 16 3 Si 0.96 45.28 29.55 68.60 2.03 47.31 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.54 -30.63 8.48 25.60 0.22 -30.41 16 8 H 0.06 3.45 7.76 -2.91 -0.02 3.43 16 9 C 0.04 2.04 2.11 -11.46 -0.02 2.02 16 10 H -0.01 -0.66 8.09 -2.39 -0.02 -0.68 16 11 C -0.11 -4.36 5.11 30.62 0.16 -4.21 16 12 C -0.13 -4.27 6.08 30.67 0.19 -4.08 16 13 C 0.08 2.68 5.81 86.37 0.50 3.18 16 14 N -0.59 -25.93 2.98 -821.50 -2.45 -28.38 16 15 C 0.55 24.07 7.63 86.81 0.66 24.73 16 16 O -0.58 -30.96 15.81 -3.85 -0.06 -31.02 16 17 C 0.05 1.66 6.58 41.87 0.28 1.94 16 18 C -0.10 -2.61 9.62 22.59 0.22 -2.40 16 19 C -0.10 -1.73 10.12 22.53 0.23 -1.51 16 20 C 0.10 1.45 6.75 22.75 0.15 1.60 16 21 O -0.49 -4.56 13.52 -90.45 -1.22 -5.78 16 22 C 0.07 1.23 11.14 85.00 0.95 2.18 16 23 N -0.44 -11.39 6.14 -184.52 -1.13 -12.52 16 24 C 0.13 6.75 5.51 86.31 0.48 7.22 16 25 H 0.26 15.63 8.31 -92.71 -0.77 14.85 16 26 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 27 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.15 4.43 4.15 -56.81 -0.24 4.19 16 32 H 0.14 3.95 7.65 -2.91 -0.02 3.93 16 33 H 0.18 1.90 8.06 -2.91 -0.02 1.87 16 34 H 0.42 -0.47 9.06 -74.06 -0.67 -1.14 16 35 H 0.20 1.94 8.06 -2.91 -0.02 1.91 16 36 H 0.06 3.52 5.95 -2.39 -0.01 3.51 16 37 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -79.37 307.64 2.06 -77.31 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 0.20 Total: 9.03 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 4.44 Total: 1.36 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -3.32 Total: -98.21 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -1.28 Total: -36.80 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -79.37 2.06 -77.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584317755.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.887 kcal (2) G-P(sol) polarization free energy of solvation -79.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds