Wall clock time and date at job start Mon Mar 30 2020 02:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86801 * 120.00133 * 2 1 4 4 H 1.48503 * 109.46930 * 275.41516 * 3 2 1 5 5 H 1.48497 * 109.47123 * 35.41260 * 3 2 1 6 6 H 1.48493 * 109.47132 * 155.41340 * 3 2 1 7 7 C 1.40024 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00243 * 341.71552 * 7 2 1 9 9 C 1.41316 * 119.99983 * 161.70885 * 7 2 1 10 10 C 1.40589 * 119.78564 * 330.06203 * 9 7 2 11 11 C 1.38341 * 119.14529 * 179.97438 * 10 9 7 12 12 C 1.38637 * 118.68567 * 0.02562 * 11 10 9 13 13 C 1.39753 * 119.48740 * 359.97438 * 12 11 10 14 14 N 1.38833 * 119.58479 * 179.97438 * 13 12 11 15 15 C 1.47449 * 110.99768 * 59.87784 * 14 13 12 16 16 C 1.54314 * 107.23227 * 236.74579 * 15 14 13 17 17 C 1.55143 * 103.02088 * 337.71451 * 16 15 14 18 18 C 1.47842 * 110.99925 * 299.04051 * 14 13 12 19 19 H 1.08995 * 110.37623 * 27.52574 * 18 14 13 20 20 C 1.53007 * 110.36976 * 265.18838 * 18 14 13 21 21 C 1.50702 * 109.47097 * 65.00144 * 20 18 14 22 22 O 1.20826 * 119.99800 * 359.97438 * 21 20 18 23 23 O 1.34232 * 119.99944 * 180.02562 * 21 20 18 24 24 N 1.31978 * 120.83501 * 0.26383 * 13 12 11 25 25 H 0.96998 * 119.99201 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.42565 * 359.97399 * 10 9 7 27 27 H 1.08000 * 120.65732 * 180.02562 * 11 10 9 28 28 H 1.08004 * 120.25798 * 180.02562 * 12 11 10 29 29 H 1.09007 * 109.88469 * 356.14780 * 15 14 13 30 30 H 1.08996 * 109.88844 * 117.33955 * 15 14 13 31 31 H 1.09001 * 110.71230 * 96.09906 * 16 15 14 32 32 H 1.09002 * 110.70660 * 219.33166 * 16 15 14 33 33 H 1.08994 * 110.99214 * 277.56418 * 17 16 15 34 34 H 1.08997 * 111.02654 * 153.76075 * 17 16 15 35 35 H 1.09004 * 109.47071 * 185.00084 * 20 18 14 36 36 H 1.09004 * 109.47057 * 304.99841 * 20 18 14 37 37 H 0.96696 * 116.99687 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3746 2.1124 -1.3939 5 1 1.5009 2.6169 0.8113 6 1 3.5915 1.4098 0.5825 7 6 2.0076 -1.2126 0.0005 8 1 1.5085 -2.1243 0.2944 9 6 3.3672 -1.2437 -0.3835 10 6 3.8505 -0.3110 -1.3179 11 6 5.1839 -0.3531 -1.6840 12 6 6.0002 -1.3182 -1.1146 13 6 5.4607 -2.2179 -0.1912 14 7 6.2762 -3.1856 0.3798 15 6 7.3915 -2.5670 1.1198 16 6 8.7007 -3.1303 0.5283 17 6 8.2442 -4.4602 -0.1275 18 6 6.8367 -4.0828 -0.6529 19 1 6.9149 -3.5613 -1.6068 20 6 5.9692 -5.3348 -0.7984 21 6 4.6094 -4.9460 -1.3188 22 8 4.3596 -3.7865 -1.5491 23 8 3.6754 -5.8877 -1.5254 24 7 4.1845 -2.1630 0.1405 25 1 -0.4849 0.8401 -0.0004 26 1 3.1893 0.4288 -1.7442 27 1 5.5811 0.3519 -2.3993 28 1 7.0452 -1.3739 -1.3818 29 1 7.3639 -1.4844 0.9952 30 1 7.3221 -2.8227 2.1771 31 1 9.1089 -2.4515 -0.2206 32 1 9.4296 -3.3196 1.3164 33 1 8.1840 -5.2593 0.6112 34 1 8.9055 -4.7388 -0.9480 35 1 6.4419 -6.0251 -1.4972 36 1 5.8622 -5.8176 0.1730 37 1 2.8183 -5.5900 -1.8596 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610624688.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:14 Heat of formation + Delta-G solvation = -59.636263 kcal Electronic energy + Delta-G solvation = -22263.780621 eV Core-core repulsion = 19005.461824 eV Total energy + Delta-G solvation = -3258.318796 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.69002 -40.48334 -39.09921 -36.85558 -35.64068 -33.54091 -32.85837 -32.65898 -30.40319 -27.77306 -27.21112 -24.10232 -23.00389 -22.74258 -21.97370 -20.88451 -19.36739 -18.77330 -17.99181 -17.55506 -17.26629 -16.75094 -16.65495 -16.21317 -16.07693 -14.99875 -14.83652 -14.67446 -14.44956 -13.99038 -13.78379 -13.38492 -13.34151 -13.25596 -12.81087 -12.69195 -12.49136 -12.30982 -12.17355 -12.13342 -12.01489 -11.83711 -11.53793 -11.35624 -11.12741 -10.24118 -10.12551 -9.27009 -9.07679 -8.95074 -6.64029 0.65179 0.89790 1.19465 1.35896 1.41437 1.55569 2.07742 2.34359 2.52368 2.80327 3.54875 3.76046 3.80174 4.07206 4.15311 4.21839 4.28297 4.44237 4.53416 4.56955 4.62748 4.73100 4.76836 4.78549 4.93326 4.99338 5.03035 5.12245 5.18990 5.28638 5.42326 5.60152 5.68651 5.77926 5.85025 6.07771 6.10598 6.38417 6.63787 6.84917 7.19326 7.97216 8.15472 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.021218 B = 0.007029 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.328672 B = 3982.397986 C = 4817.048366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.055 3.945 3 Si 0.972 3.028 4 H -0.253 1.253 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.467 4.467 8 H 0.048 0.952 9 C 0.269 3.731 10 C -0.311 4.311 11 C -0.043 4.043 12 C -0.310 4.310 13 C 0.367 3.633 14 N -0.508 5.508 15 C 0.046 3.954 16 C -0.127 4.127 17 C -0.106 4.106 18 C 0.083 3.917 19 H 0.053 0.947 20 C -0.088 4.088 21 C 0.450 3.550 22 O -0.518 6.518 23 O -0.526 6.526 24 N -0.543 5.543 25 H 0.297 0.703 26 H 0.103 0.897 27 H 0.134 0.866 28 H 0.126 0.874 29 H 0.039 0.961 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.144 0.856 36 H 0.118 0.882 37 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.633 -7.477 -2.211 19.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.161 4.161 3 Si 0.796 3.204 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.192 1.192 7 C -0.500 4.500 8 H 0.067 0.933 9 C 0.141 3.859 10 C -0.332 4.332 11 C -0.068 4.068 12 C -0.334 4.334 13 C 0.131 3.869 14 N -0.231 5.231 15 C -0.081 4.081 16 C -0.166 4.166 17 C -0.144 4.144 18 C -0.024 4.024 19 H 0.071 0.929 20 C -0.126 4.126 21 C 0.292 3.708 22 O -0.405 6.405 23 O -0.339 6.339 24 N -0.258 5.258 25 H 0.108 0.892 26 H 0.121 0.879 27 H 0.152 0.848 28 H 0.144 0.856 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.125 0.875 35 H 0.161 0.839 36 H 0.136 0.864 37 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 16.968 -8.066 -1.178 18.825 hybrid contribution -0.725 2.003 -1.332 2.512 sum 16.244 -6.063 -2.510 17.519 Atomic orbital electron populations 1.69649 1.08936 1.31646 1.36606 1.26699 0.95432 1.03766 0.90200 0.85414 0.78891 0.76492 0.79647 1.17846 1.19448 1.19225 1.19055 0.93127 0.95617 1.42186 0.93338 1.18351 0.92085 0.87373 0.88053 1.21811 0.97590 1.07048 1.06798 1.21195 0.92661 0.96499 0.96456 1.21900 1.00491 1.03386 1.07641 1.19495 0.89559 0.88840 0.89045 1.60128 1.18591 1.18364 1.26058 1.22912 0.89110 0.97327 0.98735 1.22756 0.95798 0.96831 1.01170 1.22748 0.91835 0.98033 1.01752 1.22644 0.94513 0.91653 0.93582 0.92882 1.21496 0.86934 0.99460 1.04706 1.24344 0.88387 0.83235 0.74805 1.90931 1.80867 1.21356 1.47312 1.84415 1.27240 1.42854 1.79430 1.67683 1.04036 1.25615 1.28449 0.89217 0.87915 0.84789 0.85624 0.94193 0.90158 0.90920 0.87761 0.88489 0.87465 0.83871 0.86387 0.72736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.23 13.92 21.84 0.30 -47.92 16 2 C 0.06 3.16 5.40 85.29 0.46 3.62 16 3 Si 0.97 45.75 24.51 68.60 1.68 47.43 16 4 H -0.25 -11.10 6.70 99.48 0.67 -10.43 16 5 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.27 -13.24 6.87 99.48 0.68 -12.56 16 7 C -0.47 -29.16 9.78 23.46 0.23 -28.94 16 8 H 0.05 3.33 8.06 -2.91 -0.02 3.30 16 9 C 0.27 15.65 5.64 40.19 0.23 15.87 16 10 C -0.31 -16.33 7.19 22.87 0.16 -16.16 16 11 C -0.04 -1.95 10.15 22.39 0.23 -1.72 16 12 C -0.31 -13.15 7.73 22.73 0.18 -12.97 16 13 C 0.37 16.73 3.11 133.40 0.41 17.14 16 14 N -0.51 -18.09 4.81 -668.08 -3.21 -21.30 16 15 C 0.05 1.30 6.50 86.64 0.56 1.86 16 16 C -0.13 -2.23 6.94 31.77 0.22 -2.01 16 17 C -0.11 -1.66 6.50 31.98 0.21 -1.45 16 18 C 0.08 2.21 2.23 45.39 0.10 2.31 16 19 H 0.05 1.60 6.67 -2.39 -0.02 1.59 16 20 C -0.09 -2.16 5.54 29.85 0.17 -1.99 16 21 C 0.45 15.84 8.20 71.24 0.58 16.43 16 22 O -0.52 -23.91 11.53 21.96 0.25 -23.65 16 23 O -0.53 -16.18 13.42 -51.43 -0.69 -16.87 16 24 N -0.54 -30.11 8.61 -186.59 -1.61 -31.71 16 25 H 0.30 15.09 8.29 -92.71 -0.77 14.32 16 26 H 0.10 5.29 4.73 -2.91 -0.01 5.28 16 27 H 0.13 4.93 8.06 -2.91 -0.02 4.90 16 28 H 0.13 4.43 7.70 -2.91 -0.02 4.41 16 29 H 0.04 1.27 7.00 -2.38 -0.02 1.26 16 30 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.10 1.29 8.14 -2.39 -0.02 1.28 16 33 H 0.10 1.25 8.06 -2.39 -0.02 1.23 16 34 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.14 2.23 8.14 -2.38 -0.02 2.22 16 36 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.41 11.27 9.10 -74.06 -0.67 10.60 16 Total: -1.00 -79.19 298.92 0.83 -78.36 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.36 Total: 23.69 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: 3.74 Total: -8.01 kcal Atomic # 7 Polarization: -96.43 SS G_CDS: -4.51 Total: -100.94 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -0.44 Total: -40.52 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.68 Total: 47.43 kcal Total: -79.19 0.83 -78.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610624688.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.720 kcal (2) G-P(sol) polarization free energy of solvation -79.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds