Wall clock time and date at job start Mon Mar 30 2020 02:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86800 * 119.99909 * 2 1 4 4 H 1.48498 * 109.47322 * 269.99897 * 3 2 1 5 5 H 1.48497 * 109.47077 * 29.99986 * 3 2 1 6 6 H 1.48498 * 109.47032 * 149.99936 * 3 2 1 7 7 C 1.39925 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99752 * 196.78323 * 7 2 1 9 9 C 1.41401 * 120.00441 * 16.78611 * 7 2 1 10 10 C 1.40781 * 120.20820 * 25.16279 * 9 7 2 11 11 C 1.37643 * 119.88558 * 180.02562 * 10 9 7 12 12 C 1.38539 * 120.31866 * 0.02562 * 11 10 9 13 13 C 1.39237 * 120.43001 * 359.97438 * 12 11 10 14 14 N 1.39959 * 119.94533 * 179.97438 * 13 12 11 15 15 C 1.34781 * 119.99830 * 145.77392 * 14 13 12 16 16 O 1.21584 * 120.00052 * 354.85485 * 15 14 13 17 17 N 1.34776 * 119.99946 * 174.57202 * 15 14 13 18 18 C 1.46501 * 119.99994 * 180.27592 * 17 15 14 19 19 C 1.50700 * 109.46810 * 180.02562 * 18 17 15 20 20 C 1.31007 * 119.99855 * 125.00658 * 19 18 17 21 21 C 1.50700 * 119.99855 * 179.97438 * 20 19 18 22 22 O 1.42907 * 109.46791 * 134.99780 * 21 20 19 23 23 C 1.38279 * 120.10901 * 0.25248 * 13 12 11 24 24 H 0.97007 * 120.00093 * 0.02562 * 1 2 3 25 25 H 1.07992 * 120.05793 * 0.02601 * 10 9 7 26 26 H 1.08001 * 119.84253 * 180.02562 * 11 10 9 27 27 H 1.08000 * 119.78432 * 180.02562 * 12 11 10 28 28 H 0.96998 * 120.00318 * 325.77854 * 14 13 12 29 29 H 0.97000 * 119.99652 * 0.27841 * 17 15 14 30 30 H 1.08995 * 109.47105 * 300.00061 * 18 17 15 31 31 H 1.08997 * 109.46960 * 60.00540 * 18 17 15 32 32 H 1.08002 * 120.00572 * 305.00044 * 19 18 17 33 33 H 1.08002 * 119.99573 * 359.97438 * 20 19 18 34 34 H 1.08997 * 109.46571 * 254.99373 * 21 20 19 35 35 H 1.08995 * 109.47088 * 14.99722 * 21 20 19 36 36 H 0.96698 * 113.99440 * 179.97438 * 22 21 20 37 37 H 1.08001 * 120.15819 * 179.72726 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4397 2.6526 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2118 0.0005 8 1 3.0534 -1.2316 0.2706 9 6 1.3461 -2.4105 -0.3526 10 6 0.2106 -2.3743 -1.1840 11 6 -0.4287 -3.5450 -1.5231 12 6 0.0394 -4.7600 -1.0497 13 6 1.1612 -4.8112 -0.2265 14 7 1.6250 -6.0440 0.2464 15 6 2.9467 -6.2467 0.4162 16 8 3.7417 -5.3940 0.0711 17 7 3.3866 -7.3921 0.9738 18 6 4.8228 -7.6098 1.1639 19 6 5.0467 -8.9571 1.8007 20 6 5.8390 -9.8290 1.2277 21 6 6.0632 -11.1761 1.8649 22 8 5.9778 -12.1953 0.8668 23 6 1.8144 -3.6454 0.1291 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1581 -1.4295 -1.5551 26 1 -1.2995 -3.5165 -2.1614 27 1 -0.4687 -5.6734 -1.3215 28 1 0.9954 -6.7527 0.4520 29 1 2.7523 -8.0723 1.2492 30 1 5.3263 -7.5769 0.1977 31 1 5.2260 -6.8304 1.8105 32 1 4.5540 -9.2040 2.7296 33 1 6.3314 -9.5823 0.2987 34 1 7.0509 -11.2003 2.3253 35 1 5.3029 -11.3489 2.6265 36 1 6.1128 -13.0906 1.2063 37 1 2.6820 -3.6838 0.7711 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661888628.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:27 Heat of formation + Delta-G solvation = -40.747552 kcal Electronic energy + Delta-G solvation = -19863.464114 eV Core-core repulsion = 16605.964394 eV Total energy + Delta-G solvation = -3257.499721 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.87853 -37.74724 -37.28399 -35.65805 -34.32104 -33.26599 -32.75107 -29.75103 -28.69594 -27.24873 -25.23248 -23.92916 -21.54256 -20.79456 -20.42605 -19.74425 -18.05922 -17.70208 -17.45220 -16.08052 -15.53334 -15.34897 -15.17744 -14.75059 -14.49991 -14.30380 -13.93195 -13.43751 -13.04717 -12.81316 -12.70985 -12.36188 -12.09334 -11.58585 -11.33814 -11.14112 -11.08899 -10.85327 -10.75408 -10.41142 -10.16769 -9.70241 -9.57702 -9.42069 -9.07719 -8.95286 -8.82558 -7.37931 -6.82745 -6.64425 -4.27296 1.62216 2.79409 2.95467 3.13289 3.18044 3.21050 3.27577 3.77267 3.90536 4.01484 4.60201 4.63671 4.68686 4.71636 4.94507 5.01314 5.22334 5.50203 5.68599 5.79236 6.23319 6.29503 6.31312 6.46530 6.61512 6.84744 6.86172 7.10874 7.15768 7.18450 7.30819 7.41669 7.75442 7.89859 8.06339 8.17606 8.31423 8.50070 8.73101 8.96457 9.04073 9.10929 10.27835 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.029416 B = 0.003065 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.621621 B = 9133.564379 C = 9918.326666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.458 4.458 8 H 0.078 0.922 9 C 0.120 3.880 10 C -0.173 4.173 11 C -0.092 4.092 12 C -0.263 4.263 13 C 0.169 3.831 14 N -0.681 5.681 15 C 0.698 3.302 16 O -0.566 6.566 17 N -0.749 5.749 18 C 0.169 3.831 19 C -0.158 4.158 20 C -0.140 4.140 21 C 0.104 3.896 22 O -0.570 6.570 23 C -0.210 4.210 24 H 0.279 0.721 25 H 0.119 0.881 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.394 0.606 29 H 0.394 0.606 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.381 0.619 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.282 -17.737 5.098 19.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.488 4.488 8 H 0.096 0.904 9 C 0.117 3.883 10 C -0.193 4.193 11 C -0.111 4.111 12 C -0.285 4.285 13 C 0.077 3.923 14 N -0.328 5.328 15 C 0.398 3.602 16 O -0.442 6.442 17 N -0.406 5.406 18 C 0.045 3.955 19 C -0.177 4.177 20 C -0.159 4.159 21 C 0.027 3.973 22 O -0.376 6.376 23 C -0.231 4.231 24 H 0.090 0.910 25 H 0.137 0.863 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.227 0.773 29 H 0.227 0.773 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.228 0.772 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.753 -16.253 4.440 18.152 hybrid contribution -0.192 -0.480 0.724 0.890 sum 6.561 -16.733 5.164 18.700 Atomic orbital electron populations 1.69835 1.07500 1.29002 1.35909 1.25897 0.94738 1.01227 0.92314 0.86307 0.80507 0.80574 0.79286 1.19304 1.20418 1.18632 1.19582 0.97778 0.90930 1.40490 0.90388 1.17494 0.90884 0.91636 0.88312 1.21337 0.99423 0.96833 1.01696 1.20446 0.98531 0.92687 0.99477 1.20013 1.02644 0.96877 1.08945 1.17227 0.95834 0.82618 0.96608 1.42581 1.05242 1.15850 1.69099 1.15960 0.82991 0.82186 0.79030 1.90980 1.54173 1.43844 1.55159 1.45057 1.07774 1.19791 1.67995 1.20087 0.81063 0.93912 1.00401 1.22896 0.98994 0.95557 1.00220 1.22707 0.99260 0.93519 1.00407 1.21150 1.00039 0.86340 0.89778 1.86531 1.95559 1.18365 1.37133 1.20998 1.04317 0.90904 1.06920 0.91026 0.86343 0.89073 0.89374 0.77274 0.77325 0.91145 0.90576 0.86546 0.86197 0.92507 0.92948 0.77201 0.87557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.13 10.94 55.55 0.61 -20.52 16 2 C 0.08 1.96 5.16 -17.35 -0.09 1.88 16 3 Si 0.91 19.50 29.59 -169.99 -5.03 14.47 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.46 -12.88 9.05 -37.75 -0.34 -13.22 16 8 H 0.08 2.17 7.90 -52.48 -0.41 1.76 16 9 C 0.12 3.38 5.57 -106.85 -0.59 2.79 16 10 C -0.17 -4.66 8.69 -38.84 -0.34 -4.99 16 11 C -0.09 -2.21 10.02 -39.69 -0.40 -2.61 16 12 C -0.26 -5.97 9.97 -39.10 -0.39 -6.36 16 13 C 0.17 3.97 6.25 -83.76 -0.52 3.45 16 14 N -0.68 -12.68 5.34 -14.27 -0.08 -12.75 16 15 C 0.70 13.18 8.29 -86.91 -0.72 12.46 16 16 O -0.57 -13.45 14.10 5.29 0.07 -13.37 16 17 N -0.75 -9.98 5.55 -66.42 -0.37 -10.35 16 18 C 0.17 2.02 6.11 -5.19 -0.03 1.99 16 19 C -0.16 -1.36 9.23 -36.03 -0.33 -1.70 16 20 C -0.14 -1.20 9.50 -36.03 -0.34 -1.54 16 21 C 0.10 0.70 7.46 36.01 0.27 0.97 16 22 O -0.57 -4.47 13.64 -35.23 -0.48 -4.95 16 23 C -0.21 -5.62 8.39 -38.68 -0.32 -5.95 16 24 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 25 H 0.12 3.26 6.17 -52.49 -0.32 2.93 16 26 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 27 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 28 H 0.39 5.64 8.84 -40.82 -0.36 5.28 16 29 H 0.39 3.94 8.48 -40.82 -0.35 3.59 16 30 H 0.07 0.91 7.79 -51.93 -0.40 0.51 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.12 0.81 7.90 -52.49 -0.41 0.40 16 33 H 0.12 1.11 7.84 -52.49 -0.41 0.70 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.05 0.28 7.86 -51.93 -0.41 -0.13 16 36 H 0.38 1.09 9.12 45.56 0.42 1.51 16 37 H 0.11 2.96 6.48 -52.49 -0.34 2.61 16 LS Contribution 323.24 15.07 4.87 4.87 Total: -1.00 -34.17 323.24 -8.39 -42.56 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -3.83 Total: 12.88 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -4.16 Total: -12.84 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.16 Total: -43.63 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.41 Total: -18.32 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.17 -8.39 -42.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661888628.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.816 kcal (2) G-P(sol) polarization free energy of solvation -34.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds