Wall clock time and date at job start Mon Mar 30 2020 02:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86800 * 119.99909 * 2 1 4 4 H 1.48498 * 109.47322 * 269.99897 * 3 2 1 5 5 H 1.48497 * 109.47077 * 29.99986 * 3 2 1 6 6 H 1.48498 * 109.47032 * 149.99936 * 3 2 1 7 7 C 1.39925 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99752 * 196.78323 * 7 2 1 9 9 C 1.41401 * 120.00441 * 16.78611 * 7 2 1 10 10 C 1.40781 * 120.20820 * 25.16279 * 9 7 2 11 11 C 1.37643 * 119.88558 * 180.02562 * 10 9 7 12 12 C 1.38539 * 120.31866 * 0.02562 * 11 10 9 13 13 C 1.39237 * 120.43001 * 359.97438 * 12 11 10 14 14 N 1.39959 * 119.94533 * 179.97438 * 13 12 11 15 15 C 1.34781 * 119.99830 * 145.77392 * 14 13 12 16 16 O 1.21584 * 120.00052 * 354.85485 * 15 14 13 17 17 N 1.34776 * 119.99946 * 174.57202 * 15 14 13 18 18 C 1.46501 * 119.99994 * 180.27592 * 17 15 14 19 19 C 1.50700 * 109.46810 * 180.02562 * 18 17 15 20 20 C 1.31007 * 119.99855 * 125.00658 * 19 18 17 21 21 C 1.50700 * 119.99855 * 179.97438 * 20 19 18 22 22 O 1.42907 * 109.46791 * 134.99780 * 21 20 19 23 23 C 1.38279 * 120.10901 * 0.25248 * 13 12 11 24 24 H 0.97007 * 120.00093 * 0.02562 * 1 2 3 25 25 H 1.07992 * 120.05793 * 0.02601 * 10 9 7 26 26 H 1.08001 * 119.84253 * 180.02562 * 11 10 9 27 27 H 1.08000 * 119.78432 * 180.02562 * 12 11 10 28 28 H 0.96998 * 120.00318 * 325.77854 * 14 13 12 29 29 H 0.97000 * 119.99652 * 0.27841 * 17 15 14 30 30 H 1.08995 * 109.47105 * 300.00061 * 18 17 15 31 31 H 1.08997 * 109.46960 * 60.00540 * 18 17 15 32 32 H 1.08002 * 120.00572 * 305.00044 * 19 18 17 33 33 H 1.08002 * 119.99573 * 359.97438 * 20 19 18 34 34 H 1.08997 * 109.46571 * 254.99373 * 21 20 19 35 35 H 1.08995 * 109.47088 * 14.99722 * 21 20 19 36 36 H 0.96698 * 113.99440 * 179.97438 * 22 21 20 37 37 H 1.08001 * 120.15819 * 179.72726 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4397 2.6526 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2118 0.0005 8 1 3.0534 -1.2316 0.2706 9 6 1.3461 -2.4105 -0.3526 10 6 0.2106 -2.3743 -1.1840 11 6 -0.4287 -3.5450 -1.5231 12 6 0.0394 -4.7600 -1.0497 13 6 1.1612 -4.8112 -0.2265 14 7 1.6250 -6.0440 0.2464 15 6 2.9467 -6.2467 0.4162 16 8 3.7417 -5.3940 0.0711 17 7 3.3866 -7.3921 0.9738 18 6 4.8228 -7.6098 1.1639 19 6 5.0467 -8.9571 1.8007 20 6 5.8390 -9.8290 1.2277 21 6 6.0632 -11.1761 1.8649 22 8 5.9778 -12.1953 0.8668 23 6 1.8144 -3.6454 0.1291 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1581 -1.4295 -1.5551 26 1 -1.2995 -3.5165 -2.1614 27 1 -0.4687 -5.6734 -1.3215 28 1 0.9954 -6.7527 0.4520 29 1 2.7523 -8.0723 1.2492 30 1 5.3263 -7.5769 0.1977 31 1 5.2260 -6.8304 1.8105 32 1 4.5540 -9.2040 2.7296 33 1 6.3314 -9.5823 0.2987 34 1 7.0509 -11.2003 2.3253 35 1 5.3029 -11.3489 2.6265 36 1 6.1128 -13.0906 1.2063 37 1 2.6820 -3.6838 0.7711 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661888628.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:27 Heat of formation + Delta-G solvation = -67.110134 kcal Electronic energy + Delta-G solvation = -19864.607282 eV Core-core repulsion = 16605.964394 eV Total energy + Delta-G solvation = -3258.642888 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.43779 -39.22568 -38.20457 -36.75399 -36.09645 -34.89201 -33.99057 -31.73455 -30.17512 -28.45447 -27.22913 -24.84159 -23.19196 -22.68468 -21.76980 -20.79755 -19.58489 -19.27395 -18.14330 -17.63543 -17.12404 -16.67985 -16.44118 -16.18546 -15.88025 -15.64931 -15.25213 -14.84719 -14.65207 -14.30371 -13.93817 -13.62111 -13.48533 -13.13680 -12.97297 -12.90032 -12.76666 -12.17241 -12.02856 -11.99194 -11.55581 -11.31973 -11.22744 -10.99387 -10.79808 -10.36855 -9.99006 -9.37992 -8.71790 -8.57529 -6.35767 0.85173 0.95617 1.05360 1.36535 1.49948 1.50712 1.87059 2.17508 2.22112 2.75449 3.31859 3.41731 3.75635 3.99963 4.04843 4.36219 4.47838 4.49311 4.56589 4.63999 4.65687 4.75584 5.05988 5.11157 5.13780 5.20681 5.33026 5.36749 5.55169 5.68811 5.73660 5.84294 6.07126 6.12555 6.20338 6.37944 6.70023 6.91669 6.95527 7.02386 7.10513 7.58720 8.34555 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.029416 B = 0.003065 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.621621 B = 9133.564379 C = 9918.326666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.037 3.963 3 Si 0.982 3.018 4 H -0.260 1.260 5 H -0.261 1.261 6 H -0.266 1.266 7 C -0.503 4.503 8 H 0.061 0.939 9 C 0.089 3.911 10 C -0.199 4.199 11 C -0.090 4.090 12 C -0.252 4.252 13 C 0.177 3.823 14 N -0.669 5.669 15 C 0.693 3.307 16 O -0.620 6.620 17 N -0.723 5.723 18 C 0.167 3.833 19 C -0.153 4.153 20 C -0.140 4.140 21 C 0.104 3.896 22 O -0.596 6.596 23 C -0.238 4.238 24 H 0.289 0.711 25 H 0.105 0.895 26 H 0.125 0.875 27 H 0.132 0.868 28 H 0.418 0.582 29 H 0.415 0.585 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.143 0.857 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.401 0.599 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.534 -19.739 5.513 21.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.177 4.177 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.185 1.185 6 H -0.190 1.190 7 C -0.532 4.532 8 H 0.079 0.921 9 C 0.086 3.914 10 C -0.219 4.219 11 C -0.109 4.109 12 C -0.273 4.273 13 C 0.083 3.917 14 N -0.318 5.318 15 C 0.394 3.606 16 O -0.499 6.499 17 N -0.380 5.380 18 C 0.043 3.957 19 C -0.172 4.172 20 C -0.159 4.159 21 C 0.027 3.973 22 O -0.405 6.405 23 C -0.260 4.260 24 H 0.100 0.900 25 H 0.123 0.877 26 H 0.142 0.858 27 H 0.150 0.850 28 H 0.256 0.744 29 H 0.251 0.749 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.160 0.840 33 H 0.124 0.876 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.251 0.749 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.975 -18.371 4.893 19.928 hybrid contribution 0.048 -0.067 0.585 0.591 sum 6.023 -18.438 5.478 20.156 Atomic orbital electron populations 1.69860 1.08672 1.30527 1.35710 1.26696 0.95629 1.04196 0.91217 0.85214 0.78884 0.75976 0.79641 1.18470 1.18476 1.18978 1.19724 0.97444 0.92720 1.43332 0.92080 1.17839 0.91979 0.92348 0.89233 1.21308 1.00060 0.97642 1.02902 1.20835 0.98913 0.92103 0.99039 1.20447 1.01738 0.98120 1.07004 1.17289 0.95361 0.83381 0.95714 1.42324 1.05829 1.14949 1.68694 1.16209 0.82563 0.82929 0.78940 1.90957 1.55505 1.46109 1.57378 1.44847 1.08949 1.18316 1.65911 1.20163 0.79778 0.95900 0.99872 1.22708 0.99906 0.93481 1.01061 1.22878 0.98443 0.94729 0.99864 1.21210 1.01632 0.84884 0.89594 1.86467 1.95732 1.19961 1.38337 1.20946 1.04589 0.92276 1.08154 0.89994 0.87714 0.85752 0.84990 0.74381 0.74852 0.92606 0.91727 0.83975 0.87630 0.90910 0.90983 0.74850 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.56 10.94 21.82 0.24 -44.32 16 2 C 0.04 2.01 5.16 85.25 0.44 2.45 16 3 Si 0.98 40.89 29.59 68.60 2.03 42.92 16 4 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 5 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 6 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 7 C -0.50 -29.90 9.05 23.46 0.21 -29.69 16 8 H 0.06 3.67 7.90 -2.91 -0.02 3.65 16 9 C 0.09 5.26 5.57 -21.31 -0.12 5.14 16 10 C -0.20 -10.96 8.69 22.75 0.20 -10.77 16 11 C -0.09 -4.20 10.02 22.20 0.22 -3.98 16 12 C -0.25 -10.82 9.97 22.58 0.23 -10.59 16 13 C 0.18 8.21 6.25 38.09 0.24 8.45 16 14 N -0.67 -23.97 5.34 -317.33 -1.70 -25.67 16 15 C 0.69 26.04 8.29 179.05 1.48 27.52 16 16 O -0.62 -30.56 14.10 -3.98 -0.06 -30.61 16 17 N -0.72 -18.31 5.55 -482.30 -2.68 -20.99 16 18 C 0.17 3.89 6.11 85.63 0.52 4.42 16 19 C -0.15 -2.33 9.23 25.64 0.24 -2.09 16 20 C -0.14 -2.15 9.50 25.64 0.24 -1.91 16 21 C 0.10 1.11 7.46 71.24 0.53 1.64 16 22 O -0.60 -8.00 13.64 -148.98 -2.03 -10.03 16 23 C -0.24 -13.29 8.39 22.85 0.19 -13.10 16 24 H 0.29 14.02 8.30 -92.70 -0.77 13.25 16 25 H 0.10 5.95 6.17 -2.91 -0.02 5.93 16 26 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 27 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 28 H 0.42 10.69 8.84 -92.71 -0.82 9.87 16 29 H 0.41 7.12 8.48 -92.71 -0.79 6.34 16 30 H 0.06 1.48 7.79 -2.39 -0.02 1.46 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.14 1.48 7.90 -2.91 -0.02 1.45 16 33 H 0.11 1.91 7.84 -2.91 -0.02 1.89 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.07 0.50 7.86 -2.39 -0.02 0.48 16 36 H 0.40 1.35 9.12 -74.06 -0.68 0.68 16 37 H 0.08 4.90 6.48 -2.91 -0.02 4.88 16 Total: -1.00 -78.44 323.24 -0.72 -79.17 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: -1.16 Total: 32.06 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: 4.63 Total: -22.52 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -4.14 Total: -90.98 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -2.09 Total: -40.65 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -78.44 -0.72 -79.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661888628.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.059 kcal (2) G-P(sol) polarization free energy of solvation -78.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds