Wall clock time and date at job start Mon Mar 30 2020 01:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47395 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00320 * 179.97438 * 10 9 7 12 12 O 1.21582 * 119.99937 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99899 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99905 * 179.97438 * 13 11 10 15 15 H 1.09000 * 110.72450 * 34.30387 * 14 13 11 16 16 C 1.54343 * 110.82451 * 270.89818 * 14 13 11 17 17 C 1.51668 * 105.01956 * 215.56857 * 16 14 13 18 18 C 1.38500 * 130.30760 * 197.10315 * 17 16 14 19 19 C 1.38109 * 120.21428 * 179.78928 * 18 17 16 20 20 C 1.38251 * 119.93543 * 0.02562 * 19 18 17 21 21 C 1.38103 * 119.93193 * 0.02562 * 20 19 18 22 22 C 1.38216 * 109.84071 * 16.92220 * 17 16 14 23 23 C 1.51368 * 109.75817 * 0.15121 * 22 17 16 24 24 H 1.08995 * 110.30423 * 101.74552 * 23 22 17 25 25 O 1.42898 * 110.30536 * 223.90055 * 23 22 17 26 26 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 28 28 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 29 29 H 0.97006 * 119.99945 * 0.02562 * 10 9 7 30 30 H 0.96997 * 120.00148 * 0.02562 * 13 11 10 31 31 H 1.09008 * 110.30197 * 334.35090 * 16 14 13 32 32 H 1.08999 * 110.30711 * 96.50232 * 16 14 13 33 33 H 1.08000 * 119.89350 * 359.80608 * 18 17 16 34 34 H 1.07995 * 120.02915 * 179.97438 * 19 18 17 35 35 H 1.07992 * 120.03377 * 179.97438 * 20 19 18 36 36 H 1.08006 * 119.89053 * 180.02562 * 21 20 19 37 37 H 0.96706 * 113.99917 * 295.74736 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5585 -5.1055 0.0000 13 7 2.6298 -5.9077 -0.0005 14 6 2.1415 -7.2890 0.0006 15 1 1.2183 -7.3722 -0.5729 16 6 1.9389 -7.7981 1.4435 17 6 2.3252 -9.2642 1.4008 18 6 2.0536 -10.2886 2.2925 19 6 2.5107 -11.5675 2.0419 20 6 3.2423 -11.8269 0.8979 21 6 3.5150 -10.8065 0.0082 22 6 3.0564 -9.5235 0.2570 23 6 3.2165 -8.2513 -0.5475 24 1 4.2113 -7.8319 -0.3978 25 8 2.9898 -8.5098 -1.9345 26 1 -0.4850 -0.8401 0.0004 27 1 0.6247 -2.5570 0.8897 28 1 0.6242 -2.5567 -0.8903 29 1 3.1568 -3.4354 -0.0002 30 1 3.5834 -5.7304 -0.0009 31 1 2.5891 -7.2564 2.1305 32 1 0.8962 -7.6867 1.7410 33 1 1.4823 -10.0867 3.1865 34 1 2.2976 -12.3640 2.7395 35 1 3.6009 -12.8263 0.7007 36 1 4.0863 -11.0100 -0.8856 37 1 3.6354 -9.1092 -2.3335 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001681910687.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:43 Heat of formation + Delta-G solvation = -58.966319 kcal Electronic energy + Delta-G solvation = -20477.910549 eV Core-core repulsion = 17219.620804 eV Total energy + Delta-G solvation = -3258.289746 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.72735 -39.12710 -37.15649 -35.33759 -34.28859 -33.00574 -32.15414 -31.26787 -28.40329 -26.83705 -26.30009 -23.11237 -22.29350 -21.38971 -20.95909 -20.32865 -18.35168 -17.64490 -16.91839 -16.73433 -15.78673 -15.52778 -15.25752 -14.62079 -14.39000 -13.92921 -13.87450 -13.78089 -13.27117 -13.17779 -12.86245 -12.69888 -12.38581 -12.12244 -12.05835 -11.74041 -11.23488 -11.04507 -10.97516 -10.75630 -10.38685 -10.18275 -9.57325 -9.12085 -8.91333 -8.83017 -8.77158 -8.64022 -7.90138 -6.49555 -4.22582 1.02993 1.11107 3.13365 3.38984 3.43467 3.44176 3.55585 3.77244 3.94520 4.16321 4.40383 4.46821 4.69499 4.71307 4.81782 4.92110 4.98270 5.10944 5.23245 5.29620 5.38949 5.43663 5.56565 5.79603 5.91297 5.99230 6.12698 6.21742 6.33957 6.69676 6.73860 6.89744 7.28291 7.34327 7.35361 7.46931 7.86370 8.31714 8.64443 8.81800 9.24749 9.51842 10.90968 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.042808 B = 0.003081 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.933412 B = 9084.780067 C = 9322.910482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.022 3.978 3 Si 1.082 2.918 4 H -0.289 1.289 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.622 4.622 8 H 0.057 0.943 9 C 0.257 3.743 10 N -0.723 5.723 11 C 0.696 3.304 12 O -0.598 6.598 13 N -0.746 5.746 14 C 0.179 3.821 15 H 0.111 0.889 16 C -0.097 4.097 17 C -0.077 4.077 18 C -0.108 4.108 19 C -0.113 4.113 20 C -0.125 4.125 21 C -0.096 4.096 22 C -0.134 4.134 23 C 0.140 3.860 24 H 0.076 0.924 25 O -0.549 6.549 26 H 0.274 0.726 27 H 0.015 0.985 28 H 0.015 0.985 29 H 0.389 0.611 30 H 0.392 0.608 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.910 -22.837 2.158 25.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.184 4.184 3 Si 0.910 3.090 4 H -0.215 1.215 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.660 4.660 8 H 0.075 0.925 9 C 0.135 3.865 10 N -0.375 5.375 11 C 0.396 3.604 12 O -0.477 6.477 13 N -0.402 5.402 14 C 0.072 3.928 15 H 0.129 0.871 16 C -0.135 4.135 17 C -0.078 4.078 18 C -0.126 4.126 19 C -0.131 4.131 20 C -0.143 4.143 21 C -0.114 4.114 22 C -0.134 4.134 23 C 0.081 3.919 24 H 0.094 0.906 25 O -0.354 6.354 26 H 0.084 0.916 27 H 0.033 0.967 28 H 0.033 0.967 29 H 0.221 0.779 30 H 0.226 0.774 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 9.055 -20.908 2.243 22.895 hybrid contribution 1.621 -2.051 -0.012 2.614 sum 10.676 -22.959 2.231 25.418 Atomic orbital electron populations 1.70689 1.06876 1.31171 1.45107 1.25873 0.96442 1.02703 0.93374 0.83364 0.74183 0.74353 0.77127 1.21479 1.21165 1.21158 1.22115 0.94611 0.91458 1.57829 0.92451 1.19056 0.88487 0.82575 0.96365 1.45506 1.10744 1.04050 1.77205 1.16105 0.85185 0.81001 0.78135 1.90873 1.14176 1.84163 1.58512 1.45047 1.08817 1.04333 1.82038 1.21159 0.97526 0.79495 0.94594 0.87107 1.21621 1.03621 0.90550 0.97721 1.20589 0.96909 0.95575 0.94717 1.20700 1.00459 0.92136 0.99330 1.21087 0.98040 0.96485 0.97524 1.21017 0.99616 0.98882 0.94809 1.20523 0.99932 0.91521 0.99444 1.21081 0.99838 0.95230 0.97295 1.21493 0.98576 0.91051 0.80798 0.90620 1.86650 1.56688 1.69866 1.22232 0.91568 0.96708 0.96683 0.77868 0.77380 0.89218 0.89232 0.85881 0.85756 0.85795 0.86278 0.77621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.65 55.43 0.76 -26.88 16 2 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 3 Si 1.08 24.69 29.90 -169.99 -5.08 19.61 16 4 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.62 -17.28 9.28 -34.44 -0.32 -17.60 16 8 H 0.06 1.51 7.60 -52.49 -0.40 1.12 16 9 C 0.26 6.93 4.74 -5.19 -0.02 6.90 16 10 N -0.72 -15.74 5.55 -66.42 -0.37 -16.11 16 11 C 0.70 14.55 8.57 -86.92 -0.74 13.80 16 12 O -0.60 -15.04 16.03 5.29 0.08 -14.95 16 13 N -0.75 -11.35 5.16 -57.30 -0.30 -11.65 16 14 C 0.18 2.53 3.11 -66.52 -0.21 2.32 16 15 H 0.11 1.91 7.59 -51.93 -0.39 1.52 16 16 C -0.10 -1.22 6.52 -26.70 -0.17 -1.39 16 17 C -0.08 -0.88 6.14 -104.06 -0.64 -1.52 16 18 C -0.11 -1.07 10.04 -39.53 -0.40 -1.47 16 19 C -0.11 -0.96 10.05 -39.62 -0.40 -1.36 16 20 C -0.13 -1.02 10.05 -39.63 -0.40 -1.42 16 21 C -0.10 -0.85 10.01 -39.53 -0.40 -1.24 16 22 C -0.13 -1.42 5.82 -104.21 -0.61 -2.03 16 23 C 0.14 1.54 3.94 -26.85 -0.11 1.44 16 24 H 0.08 0.69 7.79 -51.93 -0.40 0.29 16 25 O -0.55 -6.22 13.35 -35.23 -0.47 -6.69 16 26 H 0.27 8.50 7.22 -40.82 -0.29 8.20 16 27 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 28 H 0.02 0.45 8.01 -51.93 -0.42 0.03 16 29 H 0.39 7.28 8.34 -40.82 -0.34 6.94 16 30 H 0.39 4.71 8.41 -40.82 -0.34 4.36 16 31 H 0.09 1.08 8.08 -51.92 -0.42 0.66 16 32 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 34 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 37 H 0.38 2.43 9.10 45.56 0.41 2.85 16 LS Contribution 319.18 15.07 4.81 4.81 Total: -1.00 -35.33 319.18 -9.00 -44.32 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -3.92 Total: 10.58 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -4.51 Total: -3.04 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.09 Total: -54.64 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.39 Total: -21.64 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.08 Total: 19.61 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.33 -9.00 -44.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681910687.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.645 kcal (2) G-P(sol) polarization free energy of solvation -35.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds