Wall clock time and date at job start Mon Mar 30 2020 01:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47395 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00320 * 179.97438 * 10 9 7 12 12 O 1.21582 * 119.99937 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99899 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99905 * 179.97438 * 13 11 10 15 15 H 1.09000 * 110.72450 * 34.30387 * 14 13 11 16 16 C 1.54343 * 110.82451 * 270.89818 * 14 13 11 17 17 C 1.51668 * 105.01956 * 215.56857 * 16 14 13 18 18 C 1.38500 * 130.30760 * 197.10315 * 17 16 14 19 19 C 1.38109 * 120.21428 * 179.78928 * 18 17 16 20 20 C 1.38251 * 119.93543 * 0.02562 * 19 18 17 21 21 C 1.38103 * 119.93193 * 0.02562 * 20 19 18 22 22 C 1.38216 * 109.84071 * 16.92220 * 17 16 14 23 23 C 1.51368 * 109.75817 * 0.15121 * 22 17 16 24 24 H 1.08995 * 110.30423 * 101.74552 * 23 22 17 25 25 O 1.42898 * 110.30536 * 223.90055 * 23 22 17 26 26 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 28 28 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 29 29 H 0.97006 * 119.99945 * 0.02562 * 10 9 7 30 30 H 0.96997 * 120.00148 * 0.02562 * 13 11 10 31 31 H 1.09008 * 110.30197 * 334.35090 * 16 14 13 32 32 H 1.08999 * 110.30711 * 96.50232 * 16 14 13 33 33 H 1.08000 * 119.89350 * 359.80608 * 18 17 16 34 34 H 1.07995 * 120.02915 * 179.97438 * 19 18 17 35 35 H 1.07992 * 120.03377 * 179.97438 * 20 19 18 36 36 H 1.08006 * 119.89053 * 180.02562 * 21 20 19 37 37 H 0.96706 * 113.99917 * 295.74736 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5585 -5.1055 0.0000 13 7 2.6298 -5.9077 -0.0005 14 6 2.1415 -7.2890 0.0006 15 1 1.2183 -7.3722 -0.5729 16 6 1.9389 -7.7981 1.4435 17 6 2.3252 -9.2642 1.4008 18 6 2.0536 -10.2886 2.2925 19 6 2.5107 -11.5675 2.0419 20 6 3.2423 -11.8269 0.8979 21 6 3.5150 -10.8065 0.0082 22 6 3.0564 -9.5235 0.2570 23 6 3.2165 -8.2513 -0.5475 24 1 4.2113 -7.8319 -0.3978 25 8 2.9898 -8.5098 -1.9345 26 1 -0.4850 -0.8401 0.0004 27 1 0.6247 -2.5570 0.8897 28 1 0.6242 -2.5567 -0.8903 29 1 3.1568 -3.4354 -0.0002 30 1 3.5834 -5.7304 -0.0009 31 1 2.5891 -7.2564 2.1305 32 1 0.8962 -7.6867 1.7410 33 1 1.4823 -10.0867 3.1865 34 1 2.2976 -12.3640 2.7395 35 1 3.6009 -12.8263 0.7007 36 1 4.0863 -11.0100 -0.8856 37 1 3.6354 -9.1092 -2.3335 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001681910687.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:42 Heat of formation + Delta-G solvation = -86.962293 kcal Electronic energy + Delta-G solvation = -20479.124546 eV Core-core repulsion = 17219.620804 eV Total energy + Delta-G solvation = -3259.503742 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.72807 -40.63213 -38.05560 -36.65604 -36.11541 -34.66046 -33.76487 -31.97542 -29.63896 -28.22963 -27.62496 -24.98143 -23.46288 -22.28860 -21.97297 -21.82255 -20.10345 -18.73016 -18.54968 -17.81848 -16.92796 -16.61420 -16.46091 -16.04352 -15.72630 -15.59769 -15.12040 -14.81338 -14.65144 -14.44043 -14.27907 -13.98734 -13.73862 -13.56071 -13.18348 -13.08777 -12.68450 -12.57337 -12.08535 -11.85928 -11.85625 -11.50018 -11.13746 -10.91863 -10.78542 -10.44721 -9.82920 -9.76238 -9.58729 -8.79568 -6.54586 0.31539 0.41198 1.55754 1.65290 1.66651 1.82558 2.07867 2.55614 2.73481 3.09028 3.09427 3.25772 3.29090 3.69117 3.88132 3.91867 4.09864 4.11937 4.25122 4.40209 4.58169 4.68276 4.71931 4.75024 4.84582 4.97592 5.00356 5.11713 5.36282 5.43925 5.48156 5.50919 5.55999 5.59139 6.01433 6.03533 6.13226 6.36023 6.76617 7.11872 7.30714 7.57274 8.60145 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.042808 B = 0.003081 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.933412 B = 9084.780067 C = 9322.910482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.034 4.034 3 Si 1.136 2.864 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.627 4.627 8 H 0.077 0.923 9 C 0.272 3.728 10 N -0.717 5.717 11 C 0.695 3.305 12 O -0.646 6.646 13 N -0.719 5.719 14 C 0.170 3.830 15 H 0.073 0.927 16 C -0.090 4.090 17 C -0.101 4.101 18 C -0.122 4.122 19 C -0.115 4.115 20 C -0.124 4.124 21 C -0.098 4.098 22 C -0.144 4.144 23 C 0.153 3.847 24 H 0.102 0.898 25 O -0.570 6.570 26 H 0.254 0.746 27 H -0.017 1.017 28 H -0.019 1.019 29 H 0.407 0.593 30 H 0.413 0.587 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.129 0.871 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.177 -24.295 2.113 28.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.232 4.232 3 Si 0.956 3.044 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.665 4.665 8 H 0.095 0.905 9 C 0.148 3.852 10 N -0.370 5.370 11 C 0.395 3.605 12 O -0.528 6.528 13 N -0.376 5.376 14 C 0.063 3.937 15 H 0.091 0.909 16 C -0.129 4.129 17 C -0.101 4.101 18 C -0.140 4.140 19 C -0.133 4.133 20 C -0.142 4.142 21 C -0.116 4.116 22 C -0.145 4.145 23 C 0.094 3.906 24 H 0.119 0.881 25 O -0.379 6.379 26 H 0.064 0.936 27 H 0.001 0.999 28 H -0.002 1.002 29 H 0.242 0.758 30 H 0.251 0.749 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.147 0.853 34 H 0.167 0.833 35 H 0.172 0.828 36 H 0.165 0.835 37 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 12.412 -22.448 2.193 25.745 hybrid contribution 0.587 -1.776 -0.007 1.870 sum 12.999 -24.224 2.186 27.578 Atomic orbital electron populations 1.70841 1.08296 1.30018 1.47532 1.27676 0.96356 1.07178 0.91976 0.82713 0.74405 0.69867 0.77442 1.18310 1.20488 1.20567 1.22454 0.95607 0.91532 1.56864 0.90501 1.18559 0.88789 0.84566 0.93293 1.45103 1.10843 1.03423 1.77680 1.16249 0.85103 0.81523 0.77667 1.90843 1.16683 1.84863 1.60404 1.44740 1.09092 1.03643 1.80119 1.21245 0.97540 0.79245 0.95634 0.90917 1.21445 1.02462 0.92368 0.96616 1.20537 0.98582 0.94792 0.96202 1.20916 1.00914 0.92643 0.99534 1.21443 0.97293 0.96310 0.98210 1.21447 0.98538 1.00090 0.94083 1.20884 0.99575 0.90575 1.00524 1.21102 1.00596 0.95907 0.96847 1.21285 0.98008 0.90571 0.80785 0.88074 1.86600 1.58149 1.70802 1.22328 0.93631 0.99944 1.00161 0.75754 0.74949 0.88749 0.91461 0.85281 0.83303 0.82843 0.83457 0.75046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.52 13.65 21.45 0.29 -58.23 16 2 C -0.03 -1.91 5.46 84.65 0.46 -1.45 16 3 Si 1.14 48.50 29.90 68.60 2.05 50.55 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 6 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.63 -34.92 9.28 25.60 0.24 -34.69 16 8 H 0.08 3.92 7.60 -2.91 -0.02 3.89 16 9 C 0.27 15.25 4.74 85.63 0.41 15.66 16 10 N -0.72 -31.69 5.55 -482.31 -2.68 -34.37 16 11 C 0.69 29.93 8.57 179.05 1.53 31.47 16 12 O -0.65 -34.35 16.03 -3.97 -0.06 -34.42 16 13 N -0.72 -21.86 5.16 -453.45 -2.34 -24.20 16 14 C 0.17 4.89 3.11 45.90 0.14 5.03 16 15 H 0.07 2.68 7.59 -2.39 -0.02 2.66 16 16 C -0.09 -2.36 6.52 30.61 0.20 -2.16 16 17 C -0.10 -2.24 6.14 -19.50 -0.12 -2.36 16 18 C -0.12 -2.29 10.04 22.30 0.22 -2.07 16 19 C -0.11 -1.65 10.05 22.24 0.22 -1.42 16 20 C -0.12 -1.58 10.05 22.24 0.22 -1.35 16 21 C -0.10 -1.40 10.01 22.30 0.22 -1.18 16 22 C -0.14 -2.80 5.82 -19.59 -0.11 -2.92 16 23 C 0.15 3.14 3.94 30.52 0.12 3.26 16 24 H 0.10 1.55 7.79 -2.39 -0.02 1.54 16 25 O -0.57 -12.00 13.35 -148.98 -1.99 -13.98 16 26 H 0.25 16.65 7.22 -92.71 -0.67 15.98 16 27 H -0.02 -1.07 8.01 -2.38 -0.02 -1.09 16 28 H -0.02 -1.22 8.01 -2.39 -0.02 -1.23 16 29 H 0.41 14.84 8.34 -92.70 -0.77 14.06 16 30 H 0.41 9.22 8.41 -92.71 -0.78 8.45 16 31 H 0.09 2.30 8.08 -2.38 -0.02 2.28 16 32 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 34 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 35 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 36 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 37 H 0.40 4.08 9.10 -74.05 -0.67 3.41 16 Total: -1.00 -80.21 319.18 -1.97 -82.18 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: -1.00 Total: 26.65 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 3.76 Total: 5.81 kcal Atomic # 7 Polarization: -112.07 SS G_CDS: -4.72 Total: -116.79 kcal Atomic # 8 Polarization: -46.35 SS G_CDS: -2.05 Total: -48.40 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 2.05 Total: 50.55 kcal Total: -80.21 -1.97 -82.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681910687.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.785 kcal (2) G-P(sol) polarization free energy of solvation -80.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds