Wall clock time and date at job start Mon Mar 30 2020 02:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99919 * 2 1 4 4 H 1.48500 * 109.46968 * 270.00238 * 3 2 1 5 5 H 1.48501 * 109.47305 * 30.00039 * 3 2 1 6 6 H 1.48493 * 109.47027 * 150.00421 * 3 2 1 7 7 C 1.38808 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99866 * 359.97438 * 7 2 1 10 10 C 1.47017 * 125.64868 * 0.02797 * 9 7 2 11 11 C 1.54327 * 107.27213 * 178.92318 * 10 9 7 12 12 C 1.55162 * 102.94188 * 337.80341 * 11 10 9 13 13 H 1.08997 * 111.00627 * 277.39815 * 12 11 10 14 14 N 1.46501 * 111.00616 * 153.57606 * 12 11 10 15 15 C 1.34772 * 120.00059 * 155.00290 * 14 12 11 16 16 O 1.21779 * 120.00001 * 0.02562 * 15 14 12 17 17 C 1.41552 * 120.00103 * 180.02562 * 15 14 12 18 18 C 1.35624 * 119.99988 * 180.02562 * 17 15 14 19 19 C 1.41606 * 120.00043 * 180.02562 * 18 17 15 20 20 C 1.37946 * 126.10495 * 180.02562 * 19 18 17 21 21 C 1.40315 * 106.53136 * 179.97438 * 20 19 18 22 22 C 1.35157 * 107.20136 * 359.97438 * 21 20 19 23 23 O 1.34015 * 109.03542 * 359.97438 * 22 21 20 24 24 C 1.47427 * 125.64753 * 180.02562 * 9 7 2 25 25 H 0.96995 * 120.00144 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.88324 * 59.50398 * 10 9 7 27 27 H 1.08999 * 109.88337 * 298.33265 * 10 9 7 28 28 H 1.09001 * 110.71940 * 219.44782 * 11 10 9 29 29 H 1.08998 * 110.87460 * 96.24061 * 11 10 9 30 30 H 0.97000 * 119.99935 * 335.00560 * 14 12 11 31 31 H 1.08001 * 119.99829 * 359.97438 * 17 15 14 32 32 H 1.08001 * 120.00183 * 359.97438 * 18 17 15 33 33 H 1.08006 * 126.73743 * 0.02562 * 20 19 18 34 34 H 1.08001 * 126.40198 * 179.73871 * 21 20 19 35 35 H 1.08010 * 125.48284 * 179.97438 * 22 21 20 36 36 H 1.09007 * 110.36510 * 85.31255 * 24 9 7 37 37 H 1.08995 * 110.36819 * 322.99196 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1374 -2.5327 -0.0006 11 6 -0.4484 -4.0441 -0.0283 12 6 0.8520 -4.6558 -0.6134 13 1 0.8567 -4.5958 -1.7018 14 7 1.0292 -6.0394 -0.1657 15 6 1.7594 -6.8983 -0.9043 16 8 2.2723 -6.5241 -1.9435 17 6 1.9303 -8.2353 -0.4720 18 6 2.6655 -9.0995 -1.2149 19 6 2.8360 -10.4372 -0.7828 20 6 3.5545 -11.4171 -1.4358 21 6 3.4524 -12.5764 -0.6519 22 6 2.6944 -12.2664 0.4233 23 8 2.3263 -10.9803 0.3424 24 6 1.9335 -3.7311 -0.0005 25 1 -0.4850 0.8400 0.0004 26 1 -0.5575 -2.0516 -0.8838 27 1 -0.5543 -2.0851 0.9016 28 1 -1.2984 -4.2511 -0.6785 29 1 -0.6333 -4.4211 0.9776 30 1 0.6210 -6.3373 0.6622 31 1 1.4758 -8.5670 0.4499 32 1 3.1204 -8.7677 -2.1366 33 1 4.0911 -11.3123 -2.3672 34 1 3.8935 -13.5380 -0.8693 35 1 2.4281 -12.9458 1.2196 36 1 2.1660 -4.0423 1.0180 37 1 2.8333 -3.7403 -0.6156 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690082036.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:26 Heat of formation + Delta-G solvation = 26.230306 kcal Electronic energy + Delta-G solvation = -20129.905901 eV Core-core repulsion = 16875.310558 eV Total energy + Delta-G solvation = -3254.595343 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.85127 -39.76813 -37.30437 -34.35314 -33.94806 -33.35083 -31.87357 -29.53053 -28.93646 -27.09678 -24.85294 -23.78264 -22.20157 -21.06084 -20.35342 -20.01417 -19.46825 -17.83237 -17.19180 -16.70367 -16.39163 -15.88447 -15.06313 -14.64521 -14.59329 -14.22246 -13.96878 -13.33503 -13.14057 -12.98849 -12.61541 -12.39229 -12.29225 -12.19821 -11.78425 -11.03992 -10.89938 -10.82242 -10.72704 -10.34794 -10.22984 -10.08426 -9.87714 -9.77358 -9.65456 -8.73879 -8.57481 -8.21116 -6.81507 -5.69098 -3.02545 0.24687 1.84791 2.45159 2.63306 3.42665 3.45399 3.48703 3.50799 3.52198 4.44732 4.54203 4.59370 4.66074 4.93166 5.14873 5.33688 5.34648 5.43533 5.47161 5.62501 5.72306 5.77600 5.80165 5.83544 6.01919 6.15524 6.22709 6.35980 6.45023 6.62542 6.72348 6.74579 7.01814 7.56164 7.60245 7.74141 7.84443 8.27011 8.42532 9.24267 9.84146 10.49272 11.42901 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.047560 B = 0.002800 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.586952 B = 9998.102071 C =10253.783660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.010 4.010 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.150 4.150 12 C 0.126 3.874 13 H 0.098 0.902 14 N -0.710 5.710 15 C 0.543 3.457 16 O -0.547 6.547 17 C -0.194 4.194 18 C -0.002 4.002 19 C -0.003 4.003 20 C -0.169 4.169 21 C -0.218 4.218 22 C -0.024 4.024 23 O -0.166 6.166 24 C 0.129 3.871 25 H 0.252 0.748 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.398 0.602 31 H 0.129 0.871 32 H 0.161 0.839 33 H 0.156 0.844 34 H 0.152 0.848 35 H 0.206 0.794 36 H 0.020 0.980 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.324 -24.772 1.136 24.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.189 4.189 12 C 0.020 3.980 13 H 0.116 0.884 14 N -0.360 5.360 15 C 0.333 3.667 16 O -0.427 6.427 17 C -0.215 4.215 18 C -0.022 4.022 19 C -0.052 4.052 20 C -0.188 4.188 21 C -0.237 4.237 22 C -0.093 4.093 23 O -0.061 6.061 24 C 0.002 3.998 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.232 0.768 31 H 0.147 0.853 32 H 0.179 0.821 33 H 0.174 0.826 34 H 0.170 0.830 35 H 0.222 0.778 36 H 0.037 0.963 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.438 -24.063 0.618 24.194 hybrid contribution 0.302 0.486 0.460 0.735 sum 2.740 -23.577 1.078 23.760 Atomic orbital electron populations 1.69947 1.04878 1.25052 1.57312 1.24807 0.95761 0.97688 1.02294 0.86088 0.78552 0.83353 0.77600 1.21558 1.21689 1.20697 1.19079 0.90509 0.82278 1.43542 0.90375 1.44400 1.01653 0.99816 1.87244 1.21144 0.84518 0.87464 1.01460 1.23186 0.95916 1.00022 0.99734 1.22330 0.96842 0.78686 1.00109 0.88429 1.45958 1.52447 1.11730 1.25825 1.16986 0.79377 0.85964 0.84406 1.90851 1.48440 1.79323 1.24082 1.22184 1.02913 0.94364 1.01994 1.20672 0.95163 0.87245 0.99091 1.19944 1.02356 0.94952 0.87977 1.22377 1.02264 0.92312 1.01860 1.21792 1.04819 1.00505 0.96621 1.24311 1.00474 0.83129 1.01426 1.84108 1.59672 1.23944 1.38398 1.21828 0.94866 0.86141 0.96971 0.93746 0.93223 0.93587 0.91628 0.92058 0.76760 0.85288 0.82134 0.82593 0.82982 0.77767 0.96281 0.93878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.44 10.31 55.49 0.57 -26.87 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.23 -6.48 10.28 -15.06 -0.15 -6.64 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.60 -15.92 3.39 -170.06 -0.58 -16.50 16 10 C 0.18 4.37 5.37 -3.07 -0.02 4.35 16 11 C -0.15 -2.74 6.60 -24.89 -0.16 -2.90 16 12 C 0.13 2.34 3.42 -65.77 -0.23 2.11 16 13 H 0.10 2.01 7.54 -51.93 -0.39 1.62 16 14 N -0.71 -10.50 5.19 -54.62 -0.28 -10.79 16 15 C 0.54 8.33 7.56 -15.00 -0.11 8.22 16 16 O -0.55 -10.49 15.75 5.12 0.08 -10.41 16 17 C -0.19 -2.29 9.41 -39.25 -0.37 -2.66 16 18 C 0.00 -0.02 9.39 -39.23 -0.37 -0.39 16 19 C 0.00 -0.03 6.84 -38.40 -0.26 -0.29 16 20 C -0.17 -1.45 10.90 -38.91 -0.42 -1.87 16 21 C -0.22 -1.56 10.87 -39.90 -0.43 -2.00 16 22 C -0.02 -0.17 12.06 29.64 0.36 0.19 16 23 O -0.17 -1.62 10.18 4.70 0.05 -1.57 16 24 C 0.13 2.85 6.93 -2.52 -0.02 2.84 16 25 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.05 1.34 7.38 -51.93 -0.38 0.95 16 27 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 0.99 8.00 -51.93 -0.42 0.58 16 30 H 0.40 4.64 8.52 -40.82 -0.35 4.30 16 31 H 0.13 1.25 7.72 -52.49 -0.41 0.85 16 32 H 0.16 1.75 7.46 -52.49 -0.39 1.35 16 33 H 0.16 1.04 8.06 -52.48 -0.42 0.62 16 34 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.21 0.61 8.06 -52.48 -0.42 0.18 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 319.67 15.07 4.82 4.82 Total: -1.00 -34.10 319.67 -7.46 -41.56 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -4.81 Total: 1.65 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -2.29 Total: 0.59 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.29 Total: -54.16 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.13 Total: -11.98 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.10 -7.46 -41.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690082036.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.794 kcal (2) G-P(sol) polarization free energy of solvation -34.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds