Wall clock time and date at job start Mon Mar 30 2020 02:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99919 * 2 1 4 4 H 1.48500 * 109.46968 * 270.00238 * 3 2 1 5 5 H 1.48501 * 109.47305 * 30.00039 * 3 2 1 6 6 H 1.48493 * 109.47027 * 150.00421 * 3 2 1 7 7 C 1.38808 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99866 * 359.97438 * 7 2 1 10 10 C 1.47017 * 125.64868 * 0.02797 * 9 7 2 11 11 C 1.54327 * 107.27213 * 178.92318 * 10 9 7 12 12 C 1.55162 * 102.94188 * 337.80341 * 11 10 9 13 13 H 1.08997 * 111.00627 * 277.39815 * 12 11 10 14 14 N 1.46501 * 111.00616 * 153.57606 * 12 11 10 15 15 C 1.34772 * 120.00059 * 155.00290 * 14 12 11 16 16 O 1.21779 * 120.00001 * 0.02562 * 15 14 12 17 17 C 1.41552 * 120.00103 * 180.02562 * 15 14 12 18 18 C 1.35624 * 119.99988 * 180.02562 * 17 15 14 19 19 C 1.41606 * 120.00043 * 180.02562 * 18 17 15 20 20 C 1.37946 * 126.10495 * 180.02562 * 19 18 17 21 21 C 1.40315 * 106.53136 * 179.97438 * 20 19 18 22 22 C 1.35157 * 107.20136 * 359.97438 * 21 20 19 23 23 O 1.34015 * 109.03542 * 359.97438 * 22 21 20 24 24 C 1.47427 * 125.64753 * 180.02562 * 9 7 2 25 25 H 0.96995 * 120.00144 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.88324 * 59.50398 * 10 9 7 27 27 H 1.08999 * 109.88337 * 298.33265 * 10 9 7 28 28 H 1.09001 * 110.71940 * 219.44782 * 11 10 9 29 29 H 1.08998 * 110.87460 * 96.24061 * 11 10 9 30 30 H 0.97000 * 119.99935 * 335.00560 * 14 12 11 31 31 H 1.08001 * 119.99829 * 359.97438 * 17 15 14 32 32 H 1.08001 * 120.00183 * 359.97438 * 18 17 15 33 33 H 1.08006 * 126.73743 * 0.02562 * 20 19 18 34 34 H 1.08001 * 126.40198 * 179.73871 * 21 20 19 35 35 H 1.08010 * 125.48284 * 179.97438 * 22 21 20 36 36 H 1.09007 * 110.36510 * 85.31255 * 24 9 7 37 37 H 1.08995 * 110.36819 * 322.99196 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1374 -2.5327 -0.0006 11 6 -0.4484 -4.0441 -0.0283 12 6 0.8520 -4.6558 -0.6134 13 1 0.8567 -4.5958 -1.7018 14 7 1.0292 -6.0394 -0.1657 15 6 1.7594 -6.8983 -0.9043 16 8 2.2723 -6.5241 -1.9435 17 6 1.9303 -8.2353 -0.4720 18 6 2.6655 -9.0995 -1.2149 19 6 2.8360 -10.4372 -0.7828 20 6 3.5545 -11.4171 -1.4358 21 6 3.4524 -12.5764 -0.6519 22 6 2.6944 -12.2664 0.4233 23 8 2.3263 -10.9803 0.3424 24 6 1.9335 -3.7311 -0.0005 25 1 -0.4850 0.8400 0.0004 26 1 -0.5575 -2.0516 -0.8838 27 1 -0.5543 -2.0851 0.9016 28 1 -1.2984 -4.2511 -0.6785 29 1 -0.6333 -4.4211 0.9776 30 1 0.6210 -6.3373 0.6622 31 1 1.4758 -8.5670 0.4499 32 1 3.1204 -8.7677 -2.1366 33 1 4.0911 -11.3123 -2.3672 34 1 3.8935 -13.5380 -0.8693 35 1 2.4281 -12.9458 1.2196 36 1 2.1660 -4.0423 1.0180 37 1 2.8333 -3.7403 -0.6156 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690082036.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:25 Heat of formation + Delta-G solvation = 2.955299 kcal Electronic energy + Delta-G solvation = -20130.915181 eV Core-core repulsion = 16875.310558 eV Total energy + Delta-G solvation = -3255.604623 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.47872 -41.05533 -38.99516 -35.67776 -35.14447 -33.99859 -33.72835 -31.13418 -30.10127 -28.70139 -26.60909 -24.99247 -22.84150 -22.25142 -21.96480 -21.54140 -20.47766 -18.99274 -18.66771 -17.84004 -17.30183 -17.04678 -16.68068 -16.17962 -15.76164 -15.61322 -15.56517 -14.58795 -14.18260 -13.97575 -13.90468 -13.71599 -13.67296 -13.51295 -13.08011 -12.96773 -12.77157 -12.42508 -12.12674 -12.04093 -11.82728 -11.69455 -11.58235 -11.06836 -10.83228 -10.73226 -10.11310 -8.96284 -8.91084 -7.87493 -5.23955 -0.57270 1.18044 1.44930 1.47609 1.56164 1.72902 2.03732 2.22395 2.44208 2.50850 3.30988 3.66084 3.69106 3.88087 4.00162 4.05335 4.09039 4.16649 4.20039 4.32398 4.58636 4.69217 4.72552 4.85580 4.90599 4.96977 5.01743 5.09180 5.12921 5.24553 5.41061 5.54399 5.55708 5.63315 5.72369 6.10447 6.17305 6.60172 7.07896 7.26200 7.73170 8.36846 9.22732 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.047560 B = 0.002800 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.586952 B = 9998.102071 C =10253.783660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.064 4.064 3 Si 0.982 3.018 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.270 1.270 7 C -0.248 4.248 8 H 0.078 0.922 9 N -0.627 5.627 10 C 0.184 3.816 11 C -0.128 4.128 12 C 0.144 3.856 13 H 0.076 0.924 14 N -0.698 5.698 15 C 0.546 3.454 16 O -0.594 6.594 17 C -0.216 4.216 18 C 0.022 3.978 19 C -0.043 4.043 20 C -0.159 4.159 21 C -0.232 4.232 22 C -0.010 4.010 23 O -0.180 6.180 24 C 0.128 3.872 25 H 0.249 0.751 26 H 0.014 0.986 27 H 0.018 0.982 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.417 0.583 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.170 0.830 34 H 0.178 0.822 35 H 0.245 0.755 36 H 0.032 0.968 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.739 -27.552 2.106 27.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.257 4.257 3 Si 0.809 3.191 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.195 1.195 7 C -0.376 4.376 8 H 0.096 0.904 9 N -0.354 5.354 10 C 0.059 3.941 11 C -0.167 4.167 12 C 0.038 3.962 13 H 0.094 0.906 14 N -0.349 5.349 15 C 0.338 3.662 16 O -0.478 6.478 17 C -0.237 4.237 18 C 0.002 3.998 19 C -0.091 4.091 20 C -0.179 4.179 21 C -0.251 4.251 22 C -0.078 4.078 23 O -0.076 6.076 24 C 0.001 3.999 25 H 0.058 0.942 26 H 0.032 0.968 27 H 0.036 0.964 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.255 0.745 31 H 0.170 0.830 32 H 0.173 0.827 33 H 0.188 0.812 34 H 0.195 0.805 35 H 0.261 0.739 36 H 0.049 0.951 37 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.852 -26.890 1.617 27.089 hybrid contribution 0.274 1.116 0.144 1.158 sum 3.126 -25.774 1.761 26.023 Atomic orbital electron populations 1.70160 1.06184 1.25488 1.57978 1.25674 0.96749 1.01009 1.02283 0.85039 0.77642 0.78881 0.77516 1.21293 1.21565 1.19473 1.19433 0.90924 0.83745 1.43543 0.90448 1.44694 1.02724 1.00748 1.87185 1.20944 0.83423 0.91367 0.98388 1.22999 0.96280 0.95265 1.02126 1.21809 0.95557 0.80236 0.98632 0.90621 1.45694 1.52666 1.09881 1.26641 1.17476 0.78157 0.87053 0.83502 1.90829 1.50472 1.80293 1.26208 1.21963 1.05539 0.92469 1.03708 1.20716 0.93130 0.87790 0.98195 1.19866 1.04915 0.94984 0.89367 1.22792 1.00569 0.92479 1.02024 1.22189 1.05257 1.01128 0.96489 1.25235 0.98413 0.82330 1.01849 1.84102 1.60032 1.25194 1.38261 1.21940 0.95207 0.85296 0.97414 0.94168 0.96798 0.96394 0.89312 0.88991 0.74504 0.83042 0.82726 0.81231 0.80471 0.73913 0.95053 0.95656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.04 10.31 21.65 0.22 -57.82 16 2 C -0.06 -3.76 5.49 84.86 0.47 -3.29 16 3 Si 0.98 47.04 29.55 68.60 2.03 49.07 16 4 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.25 -14.58 10.28 84.03 0.86 -13.71 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.63 -33.90 3.39 -691.96 -2.35 -36.25 16 10 C 0.18 9.20 5.37 86.73 0.47 9.67 16 11 C -0.13 -4.55 6.60 31.79 0.21 -4.34 16 12 C 0.14 5.35 3.42 46.39 0.16 5.51 16 13 H 0.08 3.18 7.54 -2.39 -0.02 3.16 16 14 N -0.70 -19.83 5.19 -444.89 -2.31 -22.13 16 15 C 0.55 16.57 7.56 85.06 0.64 17.21 16 16 O -0.59 -23.32 15.75 -4.60 -0.07 -23.39 16 17 C -0.22 -4.89 9.41 22.48 0.21 -4.68 16 18 C 0.02 0.46 9.39 22.50 0.21 0.67 16 19 C -0.04 -0.80 6.84 23.03 0.16 -0.64 16 20 C -0.16 -2.37 10.90 22.71 0.25 -2.12 16 21 C -0.23 -2.53 10.87 22.07 0.24 -2.29 16 22 C -0.01 -0.10 12.06 67.11 0.81 0.71 16 23 O -0.18 -3.06 10.18 -6.09 -0.06 -3.12 16 24 C 0.13 5.73 6.93 86.86 0.60 6.33 16 25 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 26 H 0.01 0.78 7.38 -2.39 -0.02 0.76 16 27 H 0.02 0.98 7.51 -2.39 -0.02 0.96 16 28 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.09 2.74 8.00 -2.39 -0.02 2.72 16 30 H 0.42 8.72 8.52 -92.71 -0.79 7.93 16 31 H 0.15 2.65 7.72 -2.91 -0.02 2.63 16 32 H 0.16 3.39 7.46 -2.91 -0.02 3.37 16 33 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.18 0.96 8.06 -2.91 -0.02 0.93 16 35 H 0.24 0.27 8.06 -2.91 -0.02 0.24 16 36 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -76.90 319.67 3.04 -73.86 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.29 Total: 10.75 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 5.29 Total: 9.03 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -4.43 Total: -116.20 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.13 Total: -26.51 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -76.90 3.04 -73.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690082036.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.820 kcal (2) G-P(sol) polarization free energy of solvation -76.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds