Wall clock time and date at job start Mon Mar 30 2020 02:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46903 * 109.47143 * 2 1 4 4 C 1.48229 * 110.99939 * 284.11280 * 3 2 1 5 5 C 1.51311 * 104.76673 * 214.70679 * 4 3 2 6 6 O 1.21276 * 125.75495 * 197.02445 * 5 4 3 7 7 N 1.34857 * 108.50071 * 16.76799 * 5 4 3 8 8 C 1.46805 * 109.58714 * 0.42112 * 7 5 4 9 9 H 1.08998 * 110.11751 * 101.57216 * 8 7 5 10 10 C 1.50697 * 110.11967 * 223.16964 * 8 7 5 11 11 C 1.38305 * 119.93026 * 148.27173 * 10 8 7 12 12 C 1.38100 * 120.06982 * 179.72604 * 11 10 8 13 13 C 1.38885 * 119.92527 * 0.52322 * 12 11 10 14 14 O 1.35752 * 120.06549 * 179.72405 * 13 12 11 15 15 C 1.34831 * 116.99687 * 174.49257 * 14 13 12 16 16 H 1.07998 * 120.00375 * 5.06262 * 15 14 13 17 17 C 1.38658 * 119.99901 * 185.06325 * 15 14 13 18 18 N 1.31549 * 120.00225 * 180.02562 * 17 15 14 19 19 Si 1.86809 * 119.99813 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46734 * 90.00315 * 19 17 15 21 21 H 1.48494 * 109.46801 * 210.00233 * 19 17 15 22 22 H 1.48496 * 109.46890 * 330.00525 * 19 17 15 23 23 C 1.38877 * 119.86395 * 359.75489 * 13 12 11 24 24 C 1.38093 * 119.93148 * 359.97438 * 23 13 12 25 25 H 1.08996 * 109.47305 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47141 * 299.99892 * 1 2 3 27 27 H 1.08994 * 109.47185 * 59.99652 * 1 2 3 28 28 H 1.09003 * 109.47141 * 240.00108 * 2 1 3 29 29 H 1.09003 * 109.47397 * 120.00281 * 2 1 3 30 30 H 1.09001 * 110.37988 * 95.89456 * 4 3 2 31 31 H 1.08998 * 110.38311 * 333.53080 * 4 3 2 32 32 H 0.96993 * 125.20753 * 180.46300 * 7 5 4 33 33 H 1.07998 * 119.96693 * 359.97438 * 11 10 8 34 34 H 1.07997 * 120.03746 * 180.27458 * 12 11 10 35 35 H 0.97001 * 120.00597 * 180.02562 * 18 17 15 36 36 H 1.08008 * 120.03184 * 180.02562 * 23 13 12 37 37 H 1.07999 * 119.96728 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8786 1.9983 -1.3421 5 6 3.0770 2.9122 -1.4764 6 8 3.1972 3.8093 -2.2836 7 7 3.9867 2.5649 -0.5434 8 6 3.4800 1.4315 0.2401 9 1 3.9450 0.5051 -0.0969 10 6 3.7593 1.6480 1.7051 11 6 2.8879 1.1469 2.6550 12 6 3.1439 1.3387 3.9985 13 6 4.2721 2.0450 4.3948 14 8 4.5236 2.2401 5.7145 15 6 5.6916 2.8331 6.0339 16 1 6.3405 3.2031 5.2539 17 6 6.0598 2.9680 7.3639 18 7 7.1991 3.5470 7.6756 19 14 4.9371 2.3286 8.7132 20 1 5.2841 0.9172 9.0183 21 1 5.1099 3.1559 9.9342 22 1 3.5252 2.4043 8.2595 23 6 5.1421 2.5519 3.4383 24 6 4.8835 2.3519 2.0967 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 0.9544 2.5732 -1.4015 31 1 1.8989 1.2297 -2.1147 32 1 4.8443 2.9980 -0.4100 33 1 2.0084 0.6015 2.3461 34 1 2.4655 0.9433 4.7399 35 1 7.4569 3.6410 8.6060 36 1 6.0205 3.1013 3.7435 37 1 5.5598 2.7454 1.3523 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189891877.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:19 Heat of formation + Delta-G solvation = -9.427358 kcal Electronic energy + Delta-G solvation = -20939.389196 eV Core-core repulsion = 17683.247621 eV Total energy + Delta-G solvation = -3256.141575 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.94572 -39.14598 -37.70412 -36.40733 -34.41203 -32.47642 -30.56539 -30.35533 -30.13572 -27.18108 -25.44338 -23.81110 -22.44641 -21.76515 -20.71720 -20.49234 -17.95933 -17.80426 -17.11536 -16.57517 -15.55554 -15.27139 -15.15785 -14.78219 -14.48112 -13.99458 -13.91277 -13.77258 -13.71822 -13.39288 -12.90773 -12.80804 -12.37150 -12.26772 -12.18272 -12.07829 -11.42786 -11.29792 -11.06695 -10.83023 -10.65652 -10.22162 -10.09437 -9.63210 -9.46821 -8.94290 -8.75082 -8.35827 -7.43866 -6.48315 -4.15335 2.00529 2.04954 2.41010 3.13605 3.18678 3.21736 3.36016 3.52575 4.12492 4.18101 4.38057 4.57453 4.76306 4.81008 4.91485 5.02121 5.05558 5.13411 5.22203 5.31203 5.40741 5.49187 5.63168 5.68283 5.95337 6.02418 6.11076 6.19754 6.39516 6.46152 6.67131 6.76859 6.85689 6.96216 7.13671 7.18443 7.50180 7.71679 7.95779 8.07193 8.86447 9.47476 10.58997 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.027998 B = 0.004114 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.819437 B = 6803.610242 C = 7600.901795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.035 3.965 3 N -0.497 5.497 4 C 0.000 4.000 5 C 0.520 3.480 6 O -0.531 6.531 7 N -0.724 5.724 8 C 0.342 3.658 9 H 0.068 0.932 10 C -0.186 4.186 11 C -0.047 4.047 12 C -0.194 4.194 13 C 0.165 3.835 14 O -0.214 6.214 15 C -0.392 4.392 16 H 0.107 0.893 17 C 0.065 3.935 18 N -0.877 5.877 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.259 1.259 23 C -0.220 4.220 24 C -0.061 4.061 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.418 0.582 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.280 0.720 36 H 0.134 0.866 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.016 -8.457 -13.991 19.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.093 4.093 3 N -0.224 5.224 4 C -0.131 4.131 5 C 0.306 3.694 6 O -0.407 6.407 7 N -0.382 5.382 8 C 0.148 3.852 9 H 0.086 0.914 10 C -0.188 4.188 11 C -0.066 4.066 12 C -0.213 4.213 13 C 0.112 3.888 14 O -0.118 6.118 15 C -0.467 4.467 16 H 0.124 0.876 17 C -0.139 4.139 18 N -0.514 5.514 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.183 1.183 23 C -0.239 4.239 24 C -0.080 4.080 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.134 0.866 31 H 0.103 0.897 32 H 0.260 0.740 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.091 0.909 36 H 0.152 0.848 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.326 -7.721 -13.636 18.766 hybrid contribution 0.670 -0.378 0.187 0.791 sum -9.656 -8.099 -13.449 18.431 Atomic orbital electron populations 1.21729 0.93885 1.01827 1.02957 1.22514 0.97137 0.87641 1.02004 1.65612 1.13176 1.18807 1.24764 1.23186 0.99427 0.98797 0.91695 1.20953 0.85052 0.83585 0.79846 1.90765 1.79958 1.31467 1.38489 1.46685 1.21089 1.35543 1.34910 1.20827 0.86360 0.88030 0.89991 0.91430 1.19096 0.98934 1.08643 0.92162 1.20430 0.97187 0.97735 0.91210 1.20225 0.99076 1.06183 0.95800 1.19178 0.93274 0.92323 0.84054 1.83577 1.38755 1.69974 1.19515 1.20776 0.94438 1.36729 0.94761 0.87575 1.24480 0.96115 0.95949 0.97376 1.69638 1.20665 1.41150 1.19948 0.86177 0.81734 0.78972 0.80014 1.19820 1.20716 1.18298 1.21204 1.03098 1.07282 0.92327 1.20423 0.95640 0.96683 0.95223 0.91941 0.91330 0.92654 0.93872 0.89279 0.86552 0.89708 0.74035 0.86110 0.86347 0.90939 0.84804 0.87750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.04 37.16 0.37 -0.64 16 2 C 0.04 0.28 4.69 -3.82 -0.02 0.26 16 3 N -0.50 -5.24 4.54 -230.58 -1.05 -6.29 16 4 C 0.00 0.00 6.10 -3.94 -0.02 -0.03 16 5 C 0.52 6.92 8.61 -10.65 -0.09 6.83 16 6 O -0.53 -8.95 18.03 5.56 0.10 -8.85 16 7 N -0.72 -8.88 5.70 -56.86 -0.32 -9.21 16 8 C 0.34 4.03 3.43 -126.73 -0.43 3.59 16 9 H 0.07 0.70 7.79 -51.93 -0.40 0.30 16 10 C -0.19 -2.78 5.67 -104.58 -0.59 -3.37 16 11 C -0.05 -0.72 9.07 -39.61 -0.36 -1.08 16 12 C -0.19 -3.58 9.99 -39.39 -0.39 -3.97 16 13 C 0.16 3.62 6.65 -39.11 -0.26 3.36 16 14 O -0.21 -5.46 8.59 0.04 0.00 -5.45 16 15 C -0.39 -10.75 9.95 30.89 0.31 -10.44 16 16 H 0.11 2.97 5.44 -52.49 -0.29 2.68 16 17 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 18 N -0.88 -24.84 13.96 55.48 0.77 -24.07 16 19 Si 0.91 21.15 28.62 -169.99 -4.86 16.29 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 22 H -0.26 -6.07 7.11 56.52 0.40 -5.66 16 23 C -0.22 -4.48 9.17 -39.40 -0.36 -4.84 16 24 C -0.06 -1.01 9.31 -39.61 -0.37 -1.37 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.36 7.74 -51.93 -0.40 -0.04 16 28 H 0.04 0.29 7.66 -51.93 -0.40 -0.11 16 29 H 0.09 0.72 6.36 -51.93 -0.33 0.39 16 30 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.09 0.67 7.51 -51.93 -0.39 0.28 16 32 H 0.42 4.83 7.39 -40.82 -0.30 4.53 16 33 H 0.12 1.53 5.47 -52.49 -0.29 1.24 16 34 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 35 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.13 2.90 5.64 -52.48 -0.30 2.60 16 37 H 0.10 1.45 6.57 -52.49 -0.34 1.11 16 LS Contribution 307.27 15.07 4.63 4.63 Total: -1.00 -30.80 307.27 -7.31 -38.11 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -4.26 Total: 4.87 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -2.32 Total: -10.03 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: -0.60 Total: -39.56 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: 0.10 Total: -14.30 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.86 Total: 16.29 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.80 -7.31 -38.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189891877.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.682 kcal (2) G-P(sol) polarization free energy of solvation -30.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds