Wall clock time and date at job start Mon Mar 30 2020 02:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46903 * 109.47143 * 2 1 4 4 C 1.48229 * 110.99939 * 284.11280 * 3 2 1 5 5 C 1.51311 * 104.76673 * 214.70679 * 4 3 2 6 6 O 1.21276 * 125.75495 * 197.02445 * 5 4 3 7 7 N 1.34857 * 108.50071 * 16.76799 * 5 4 3 8 8 C 1.46805 * 109.58714 * 0.42112 * 7 5 4 9 9 H 1.08998 * 110.11751 * 101.57216 * 8 7 5 10 10 C 1.50697 * 110.11967 * 223.16964 * 8 7 5 11 11 C 1.38305 * 119.93026 * 148.27173 * 10 8 7 12 12 C 1.38100 * 120.06982 * 179.72604 * 11 10 8 13 13 C 1.38885 * 119.92527 * 0.52322 * 12 11 10 14 14 O 1.35752 * 120.06549 * 179.72405 * 13 12 11 15 15 C 1.34831 * 116.99687 * 174.49257 * 14 13 12 16 16 H 1.07998 * 120.00375 * 5.06262 * 15 14 13 17 17 C 1.38658 * 119.99901 * 185.06325 * 15 14 13 18 18 N 1.31549 * 120.00225 * 180.02562 * 17 15 14 19 19 Si 1.86809 * 119.99813 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46734 * 90.00315 * 19 17 15 21 21 H 1.48494 * 109.46801 * 210.00233 * 19 17 15 22 22 H 1.48496 * 109.46890 * 330.00525 * 19 17 15 23 23 C 1.38877 * 119.86395 * 359.75489 * 13 12 11 24 24 C 1.38093 * 119.93148 * 359.97438 * 23 13 12 25 25 H 1.08996 * 109.47305 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47141 * 299.99892 * 1 2 3 27 27 H 1.08994 * 109.47185 * 59.99652 * 1 2 3 28 28 H 1.09003 * 109.47141 * 240.00108 * 2 1 3 29 29 H 1.09003 * 109.47397 * 120.00281 * 2 1 3 30 30 H 1.09001 * 110.37988 * 95.89456 * 4 3 2 31 31 H 1.08998 * 110.38311 * 333.53080 * 4 3 2 32 32 H 0.96993 * 125.20753 * 180.46300 * 7 5 4 33 33 H 1.07998 * 119.96693 * 359.97438 * 11 10 8 34 34 H 1.07997 * 120.03746 * 180.27458 * 12 11 10 35 35 H 0.97001 * 120.00597 * 180.02562 * 18 17 15 36 36 H 1.08008 * 120.03184 * 180.02562 * 23 13 12 37 37 H 1.07999 * 119.96728 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8786 1.9983 -1.3421 5 6 3.0770 2.9122 -1.4764 6 8 3.1972 3.8093 -2.2836 7 7 3.9867 2.5649 -0.5434 8 6 3.4800 1.4315 0.2401 9 1 3.9450 0.5051 -0.0969 10 6 3.7593 1.6480 1.7051 11 6 2.8879 1.1469 2.6550 12 6 3.1439 1.3387 3.9985 13 6 4.2721 2.0450 4.3948 14 8 4.5236 2.2401 5.7145 15 6 5.6916 2.8331 6.0339 16 1 6.3405 3.2031 5.2539 17 6 6.0598 2.9680 7.3639 18 7 7.1991 3.5470 7.6756 19 14 4.9371 2.3286 8.7132 20 1 5.2841 0.9172 9.0183 21 1 5.1099 3.1559 9.9342 22 1 3.5252 2.4043 8.2595 23 6 5.1421 2.5519 3.4383 24 6 4.8835 2.3519 2.0967 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 0.9544 2.5732 -1.4015 31 1 1.8989 1.2297 -2.1147 32 1 4.8443 2.9980 -0.4100 33 1 2.0084 0.6015 2.3461 34 1 2.4655 0.9433 4.7399 35 1 7.4569 3.6410 8.6060 36 1 6.0205 3.1013 3.7435 37 1 5.5598 2.7454 1.3523 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189891877.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:18 Heat of formation + Delta-G solvation = -32.216025 kcal Electronic energy + Delta-G solvation = -20940.377387 eV Core-core repulsion = 17683.247621 eV Total energy + Delta-G solvation = -3257.129766 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.95677 -40.72347 -38.93338 -37.78195 -35.30976 -34.46032 -31.83562 -31.74345 -30.97778 -28.36818 -27.14911 -24.87994 -23.86607 -22.59632 -21.81621 -21.76689 -19.76839 -19.26176 -18.42459 -17.54277 -16.74474 -16.61269 -16.21994 -15.89857 -15.76608 -15.66191 -15.39620 -15.02623 -14.67943 -14.51173 -14.35673 -14.05135 -13.99109 -13.66094 -13.05921 -12.98196 -12.65529 -12.52626 -12.44856 -12.29983 -11.96493 -11.68876 -11.27299 -11.14572 -10.90144 -10.61187 -9.81107 -9.59656 -9.03078 -8.50448 -6.23416 0.54821 0.58306 1.32432 1.35943 1.40140 1.52736 2.17577 2.28113 2.65954 2.79957 3.06229 3.14962 3.23613 3.68638 4.01504 4.03640 4.09987 4.19768 4.31488 4.45620 4.56106 4.57243 4.70984 4.73389 4.93136 4.97467 5.08499 5.19110 5.27345 5.38371 5.47874 5.53935 5.60653 5.72275 5.78822 5.88232 5.96169 5.97757 6.20880 6.83872 7.06660 7.57702 8.61037 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.027998 B = 0.004114 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.819437 B = 6803.610242 C = 7600.901795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.032 3.968 3 N -0.509 5.509 4 C 0.010 3.990 5 C 0.514 3.486 6 O -0.574 6.574 7 N -0.724 5.724 8 C 0.344 3.656 9 H 0.098 0.902 10 C -0.160 4.160 11 C -0.036 4.036 12 C -0.191 4.191 13 C 0.123 3.877 14 O -0.243 6.243 15 C -0.400 4.400 16 H 0.081 0.919 17 C 0.010 3.990 18 N -0.923 5.923 19 Si 0.971 3.029 20 H -0.264 1.264 21 H -0.269 1.269 22 H -0.262 1.262 23 C -0.237 4.237 24 C -0.063 4.063 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.115 0.885 32 H 0.419 0.581 33 H 0.159 0.841 34 H 0.131 0.869 35 H 0.285 0.715 36 H 0.107 0.893 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.626 -10.754 -16.049 23.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.096 4.096 3 N -0.236 5.236 4 C -0.120 4.120 5 C 0.301 3.699 6 O -0.453 6.453 7 N -0.381 5.381 8 C 0.150 3.850 9 H 0.115 0.885 10 C -0.162 4.162 11 C -0.054 4.054 12 C -0.210 4.210 13 C 0.074 3.926 14 O -0.151 6.151 15 C -0.476 4.476 16 H 0.098 0.902 17 C -0.188 4.188 18 N -0.564 5.564 19 Si 0.793 3.207 20 H -0.189 1.189 21 H -0.194 1.194 22 H -0.186 1.186 23 C -0.257 4.257 24 C -0.081 4.081 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.142 0.858 31 H 0.132 0.868 32 H 0.260 0.740 33 H 0.177 0.823 34 H 0.149 0.851 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.957 -10.051 -15.730 22.723 hybrid contribution 1.366 0.255 0.434 1.456 sum -11.591 -9.796 -15.296 21.547 Atomic orbital electron populations 1.21722 0.93107 1.02751 1.02604 1.22651 0.97697 0.86073 1.03140 1.65585 1.11723 1.20859 1.25449 1.23210 0.97864 0.98776 0.92121 1.21533 0.85951 0.83298 0.79111 1.90748 1.80896 1.33426 1.40187 1.46761 1.21122 1.35563 1.34671 1.20879 0.87975 0.88820 0.87341 0.88455 1.19579 0.96986 1.05067 0.94534 1.20851 0.98035 0.96805 0.89739 1.20562 0.97780 1.05032 0.97664 1.19752 0.95208 0.94350 0.83278 1.83520 1.38041 1.72033 1.21466 1.20702 0.95219 1.37092 0.94624 0.90190 1.25292 0.97602 0.96411 0.99518 1.69727 1.22530 1.43524 1.20629 0.85210 0.79338 0.78826 0.77316 1.18869 1.19410 1.18609 1.21202 1.02486 1.07870 0.94121 1.20691 0.96858 0.96595 0.93985 0.90426 0.92529 0.92225 0.91744 0.89092 0.85768 0.86759 0.73987 0.82341 0.85069 0.90572 0.87512 0.85174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 10.04 71.98 0.72 -0.58 16 2 C 0.03 0.33 4.69 86.30 0.41 0.73 16 3 N -0.51 -8.25 4.54 -883.41 -4.01 -12.26 16 4 C 0.01 0.16 6.10 85.49 0.52 0.68 16 5 C 0.51 12.22 8.61 87.84 0.76 12.98 16 6 O -0.57 -18.51 18.03 -3.02 -0.05 -18.56 16 7 N -0.72 -15.53 5.70 -452.15 -2.58 -18.11 16 8 C 0.34 6.57 3.43 128.10 0.44 7.01 16 9 H 0.10 1.45 7.79 -2.39 -0.02 1.43 16 10 C -0.16 -4.24 5.67 -19.83 -0.11 -4.36 16 11 C -0.04 -0.98 9.07 22.25 0.20 -0.78 16 12 C -0.19 -6.79 9.99 22.39 0.22 -6.56 16 13 C 0.12 5.55 6.65 22.58 0.15 5.70 16 14 O -0.24 -12.93 8.59 -22.77 -0.20 -13.13 16 15 C -0.40 -23.30 9.95 67.92 0.68 -22.63 16 16 H 0.08 4.89 5.44 -2.91 -0.02 4.88 16 17 C 0.01 0.59 5.49 84.84 0.47 1.05 16 18 N -0.92 -54.88 13.96 21.61 0.30 -54.57 16 19 Si 0.97 44.80 28.62 68.60 1.96 46.76 16 20 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 23 C -0.24 -10.02 9.17 22.39 0.21 -9.82 16 24 C -0.06 -2.00 9.31 22.25 0.21 -1.79 16 25 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.50 7.74 -2.39 -0.02 0.48 16 28 H 0.06 0.46 7.66 -2.39 -0.02 0.44 16 29 H 0.09 0.94 6.36 -2.39 -0.02 0.93 16 30 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.11 1.16 7.51 -2.39 -0.02 1.14 16 32 H 0.42 8.71 7.39 -92.71 -0.68 8.02 16 33 H 0.16 3.19 5.47 -2.91 -0.02 3.17 16 34 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 35 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 36 H 0.11 5.04 5.64 -2.91 -0.02 5.03 16 37 H 0.13 3.42 6.57 -2.91 -0.02 3.41 16 Total: -1.00 -71.30 307.27 0.72 -70.59 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.43 Total: 17.63 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: 4.86 Total: -18.35 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -6.29 Total: -84.94 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -0.25 Total: -31.69 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.96 Total: 46.76 kcal Total: -71.30 0.72 -70.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189891877.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.373 kcal (2) G-P(sol) polarization free energy of solvation -71.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds