Wall clock time and date at job start Mon Mar 30 2020 02:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47029 * 2 1 4 4 C 1.50703 * 109.47638 * 119.99838 * 2 1 3 5 5 N 1.28011 * 120.00217 * 240.00215 * 4 2 1 6 6 N 1.40101 * 120.00243 * 179.97438 * 5 4 2 7 7 C 1.38792 * 120.00269 * 180.02562 * 6 5 4 8 8 C 1.39005 * 120.18313 * 354.60989 * 7 6 5 9 9 C 1.37938 * 120.06441 * 180.02562 * 8 7 6 10 10 C 1.38645 * 120.43842 * 359.97438 * 9 8 7 11 11 C 1.37731 * 120.37419 * 0.02562 * 10 9 8 12 12 C 1.39791 * 119.92306 * 359.74081 * 11 10 9 13 13 C 1.47283 * 120.21859 * 180.25699 * 12 11 10 14 14 O 1.21528 * 119.99952 * 185.70534 * 13 12 11 15 15 O 1.34770 * 120.00119 * 5.70293 * 13 12 11 16 16 C 1.52996 * 109.46915 * 240.00184 * 2 1 3 17 17 C 1.50705 * 109.47115 * 64.99776 * 16 2 1 18 18 H 1.07997 * 119.99945 * 359.97438 * 17 16 2 19 19 C 1.37873 * 119.99793 * 179.97438 * 17 16 2 20 20 N 1.31514 * 120.00530 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99918 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46862 * 90.00183 * 21 19 17 23 23 H 1.48501 * 109.47505 * 209.99797 * 21 19 17 24 24 H 1.48499 * 109.47085 * 330.00429 * 21 19 17 25 25 H 1.08997 * 109.46827 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46793 * 299.99591 * 1 2 3 27 27 H 1.08998 * 109.47353 * 59.99773 * 1 2 3 28 28 H 1.07994 * 119.99425 * 60.00090 * 4 2 1 29 29 H 0.97001 * 119.99235 * 0.02562 * 6 5 4 30 30 H 1.08001 * 119.97027 * 0.02562 * 8 7 6 31 31 H 1.07990 * 119.77938 * 179.97438 * 9 8 7 32 32 H 1.07996 * 119.81029 * 179.97438 * 10 9 8 33 33 H 1.08000 * 120.04237 * 179.97438 * 11 10 9 34 34 H 0.96701 * 117.00820 * 180.02562 * 15 13 12 35 35 H 1.09007 * 109.46976 * 184.99501 * 16 2 1 36 36 H 1.08996 * 109.47600 * 304.99902 * 16 2 1 37 37 H 0.97000 * 120.00376 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 2.7684 -0.0882 2.0731 6 7 3.2351 -0.7484 3.2172 7 6 4.0326 -0.0738 4.1311 8 6 4.4631 1.2202 3.8615 9 6 5.2561 1.8882 4.7712 10 6 5.6294 1.2781 5.9589 11 6 5.2131 -0.0034 6.2444 12 6 4.4051 -0.6928 5.3356 13 6 3.9515 -2.0613 5.6369 14 8 3.3370 -2.6955 4.8019 15 8 4.2179 -2.6104 6.8385 16 6 2.0399 -0.7212 -1.2492 17 6 1.6411 0.0571 -2.4766 18 1 1.0798 0.9742 -2.3757 19 6 1.9930 -0.4016 -3.7282 20 7 2.6762 -1.5186 -3.8512 21 14 1.4982 0.5628 -5.2496 22 1 2.5629 1.5431 -5.5822 23 1 1.3119 -0.3712 -6.3890 24 1 0.2264 1.2832 -4.9871 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.7716 -1.7443 1.4013 29 1 3.0008 -1.6771 3.3707 30 1 4.1765 1.7029 2.9389 31 1 5.5883 2.8932 4.5569 32 1 6.2509 1.8104 6.6637 33 1 5.5075 -0.4737 7.1710 34 1 3.9003 -3.5111 6.9899 35 1 3.1263 -0.7994 -1.2056 36 1 1.6053 -1.7197 -1.2952 37 1 2.9234 -1.8415 -4.7319 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766001693.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:17 Heat of formation + Delta-G solvation = -34.408311 kcal Electronic energy + Delta-G solvation = -20125.563127 eV Core-core repulsion = 16868.338297 eV Total energy + Delta-G solvation = -3257.224830 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.74965 -38.87558 -37.28338 -36.36456 -35.01279 -32.74327 -31.62676 -31.27738 -28.35497 -26.96048 -24.66579 -24.23026 -22.77016 -21.44337 -21.07746 -19.08828 -18.30171 -17.62628 -17.16128 -16.92075 -16.10070 -15.86123 -14.85667 -14.62741 -14.45984 -14.14934 -13.80570 -13.31682 -13.27930 -13.11917 -12.68783 -12.17806 -12.03861 -11.83085 -11.67918 -11.42804 -11.18475 -10.94126 -10.89440 -10.65763 -10.44881 -10.10085 -9.86041 -9.61934 -9.25239 -9.16611 -9.09924 -8.38007 -7.44385 -6.02442 -4.04836 0.63677 1.39246 2.39901 2.64145 2.82773 2.90474 3.31668 3.38275 3.40884 3.79386 4.44384 4.66923 4.84837 4.95443 5.10365 5.28557 5.33590 5.34512 5.47320 5.60982 5.89183 5.96612 6.05471 6.11483 6.20148 6.23983 6.37282 6.45036 6.59694 6.71376 6.85972 6.95310 6.99302 7.34185 7.60907 7.68538 7.72125 7.95441 8.35288 8.53427 9.00566 9.59042 11.08943 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.026157 B = 0.003287 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.212778 B = 8515.872218 C = 8995.850954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.039 4.039 3 H 0.079 0.921 4 C 0.111 3.889 5 N -0.280 5.280 6 N -0.577 5.577 7 C 0.302 3.698 8 C -0.180 4.180 9 C -0.040 4.040 10 C -0.196 4.196 11 C -0.018 4.018 12 C -0.227 4.227 13 C 0.539 3.461 14 O -0.534 6.534 15 O -0.510 6.510 16 C 0.033 3.967 17 C -0.516 4.516 18 H 0.060 0.940 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 H 0.050 0.950 26 H 0.035 0.965 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.404 0.596 30 H 0.145 0.855 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.134 0.866 34 H 0.413 0.587 35 H 0.018 0.982 36 H 0.021 0.979 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.481 2.158 20.994 21.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.060 4.060 3 H 0.097 0.903 4 C -0.103 4.103 5 N -0.083 5.083 6 N -0.303 5.303 7 C 0.193 3.807 8 C -0.202 4.202 9 C -0.059 4.059 10 C -0.216 4.216 11 C -0.037 4.037 12 C -0.234 4.234 13 C 0.387 3.613 14 O -0.426 6.426 15 O -0.321 6.321 16 C -0.006 4.006 17 C -0.554 4.554 18 H 0.078 0.922 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.198 1.198 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.093 0.907 28 H 0.117 0.883 29 H 0.254 0.746 30 H 0.162 0.838 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.152 0.848 34 H 0.271 0.729 35 H 0.037 0.963 36 H 0.039 0.961 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.936 3.065 20.783 21.374 hybrid contribution -0.742 -1.522 -0.776 1.862 sum 3.194 1.543 20.007 20.320 Atomic orbital electron populations 1.21677 0.94373 1.01511 1.01090 1.20372 0.95485 0.99926 0.90218 0.90281 1.26614 0.91719 0.97952 0.93975 1.74015 1.12782 1.25831 0.95626 1.46562 1.50364 1.14386 1.18978 1.17527 0.86460 0.91368 0.85385 1.20873 1.03109 0.93676 1.02561 1.21260 0.93075 0.99151 0.92404 1.20882 1.05842 0.95910 0.98990 1.21081 0.92075 0.93661 0.96881 1.18362 1.13603 0.93397 0.98010 1.20804 0.75132 0.86539 0.78783 1.90563 1.41080 1.63319 1.47616 1.84563 1.75444 1.36254 1.35856 1.19133 0.96518 0.95632 0.89267 1.21156 1.35172 1.08480 0.90625 0.92214 1.25010 0.95180 0.95054 0.99163 1.69963 1.38743 1.21119 1.23581 0.86586 0.78963 0.79759 0.82650 1.20678 1.21308 1.19792 0.93125 0.94616 0.90710 0.88266 0.74577 0.83752 0.85327 0.85629 0.84766 0.72903 0.96326 0.96056 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 8.99 37.16 0.33 -1.93 16 2 C -0.04 -0.77 2.75 -91.77 -0.25 -1.02 16 3 H 0.08 1.60 8.11 -51.93 -0.42 1.18 16 4 C 0.11 2.04 9.66 -13.87 -0.13 1.90 16 5 N -0.28 -5.12 10.22 32.67 0.33 -4.78 16 6 N -0.58 -9.87 6.29 32.56 0.20 -9.66 16 7 C 0.30 4.59 6.72 -83.59 -0.56 4.03 16 8 C -0.18 -2.48 9.49 -39.41 -0.37 -2.85 16 9 C -0.04 -0.42 10.03 -39.54 -0.40 -0.82 16 10 C -0.20 -1.88 10.02 -39.62 -0.40 -2.27 16 11 C -0.02 -0.19 9.61 -39.19 -0.38 -0.57 16 12 C -0.23 -2.98 5.89 -104.80 -0.62 -3.59 16 13 C 0.54 6.86 8.25 34.41 0.28 7.14 16 14 O -0.53 -8.17 14.43 -19.29 -0.28 -8.45 16 15 O -0.51 -4.50 12.70 -40.68 -0.52 -5.01 16 16 C 0.03 0.81 4.43 -27.88 -0.12 0.69 16 17 C -0.52 -13.90 8.41 -34.44 -0.29 -14.19 16 18 H 0.06 1.54 7.05 -52.49 -0.37 1.17 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 21 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 27 H 0.07 1.39 6.95 -51.93 -0.36 1.02 16 28 H 0.10 1.71 8.00 -52.49 -0.42 1.29 16 29 H 0.40 6.95 5.15 -182.71 -0.94 6.01 16 30 H 0.14 2.11 7.36 -52.49 -0.39 1.72 16 31 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.13 1.10 7.62 -52.49 -0.40 0.70 16 34 H 0.41 1.80 9.11 45.56 0.42 2.21 16 35 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 323.83 15.07 4.88 4.88 Total: -1.00 -31.76 323.83 -7.22 -38.97 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -4.56 Total: 5.55 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -3.00 Total: -11.98 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 1.27 Total: -40.12 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.79 Total: -13.47 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.76 -7.22 -38.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766001693.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.566 kcal (2) G-P(sol) polarization free energy of solvation -31.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds