Wall clock time and date at job start Mon Mar 30 2020 02:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86799 * 119.99793 * 2 1 4 4 H 1.48500 * 109.47296 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47585 * 300.00473 * 3 2 1 6 6 H 1.48501 * 109.47000 * 60.00522 * 3 2 1 7 7 C 1.40051 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.46376 * 119.99637 * 359.97438 * 7 2 1 10 10 O 1.21689 * 120.00418 * 359.97438 * 9 7 2 11 11 N 1.34774 * 119.99716 * 180.02562 * 9 7 2 12 12 C 1.46502 * 120.00362 * 179.97438 * 11 9 7 13 13 C 1.50693 * 109.47611 * 179.97438 * 12 11 9 14 14 N 1.30526 * 126.34716 * 84.74141 * 13 12 11 15 15 N 1.28593 * 109.67394 * 180.02562 * 14 13 12 16 16 C 1.30521 * 109.67073 * 0.02562 * 15 14 13 17 17 C 1.50709 * 126.34214 * 179.97438 * 16 15 14 18 18 C 1.52999 * 117.49835 * 351.40854 * 17 16 15 19 19 C 1.52991 * 60.00178 * 107.48718 * 18 17 16 20 20 N 1.35488 * 107.31147 * 0.22501 * 16 15 14 21 21 C 1.46504 * 126.98188 * 179.77116 * 20 16 15 22 22 C 1.53005 * 117.49720 * 311.72922 * 21 20 16 23 23 C 1.53003 * 117.50057 * 243.10754 * 21 20 16 24 24 H 0.97003 * 120.00136 * 359.97438 * 1 2 3 25 25 H 0.97004 * 120.00196 * 359.97438 * 11 9 7 26 26 H 1.09009 * 109.46440 * 59.99653 * 12 11 9 27 27 H 1.08994 * 109.47155 * 300.00280 * 12 11 9 28 28 H 1.08995 * 115.56077 * 205.71398 * 17 16 15 29 29 H 1.08999 * 117.49312 * 214.97912 * 18 17 16 30 30 H 1.08992 * 117.50060 * 359.97438 * 18 17 16 31 31 H 1.09007 * 117.50011 * 252.50957 * 19 18 17 32 32 H 1.09003 * 117.52028 * 107.48138 * 19 18 17 33 33 H 1.08996 * 115.54474 * 97.43392 * 21 20 16 34 34 H 1.08994 * 117.50027 * 0.02562 * 22 21 20 35 35 H 1.09006 * 117.49387 * 145.01846 * 22 21 20 36 36 H 1.08991 * 117.49747 * 214.97918 * 23 21 20 37 37 H 1.09005 * 117.49474 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7006 1.3465 -0.0006 5 1 1.8818 2.3966 -1.2124 6 1 1.8819 2.3964 1.2126 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 0.0004 11 7 1.9490 -3.6476 -0.0005 12 6 1.2166 -4.9165 0.0000 13 6 2.1958 -6.0618 -0.0007 14 7 2.7726 -6.5872 1.0457 15 7 3.5475 -7.5452 0.6777 16 6 3.5008 -7.6741 -0.6203 17 6 4.2616 -8.6794 -1.4460 18 6 5.3297 -9.5134 -0.7357 19 6 4.0110 -10.1617 -1.1615 20 7 2.6458 -6.7330 -1.0884 21 6 2.2795 -6.4922 -2.4863 22 6 3.4148 -6.3959 -3.5076 23 6 2.6517 -5.1369 -3.0909 24 1 -0.4850 0.8401 0.0004 25 1 2.9190 -3.6477 -0.0009 26 1 0.5895 -4.9743 -0.8898 27 1 0.5903 -4.9740 0.8902 28 1 4.4533 -8.3907 -2.4794 29 1 6.2241 -9.7732 -1.3018 30 1 5.4824 -9.3347 0.3286 31 1 3.2957 -10.4098 -0.3772 32 1 4.0374 -10.8481 -2.0078 33 1 1.3457 -6.9497 -2.8130 34 1 4.4341 -6.5121 -3.1395 35 1 3.2278 -6.7902 -4.5065 36 1 1.9630 -4.7029 -3.8156 37 1 3.1696 -4.4245 -2.4486 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320520428.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:49 Heat of formation + Delta-G solvation = 95.423458 kcal Electronic energy + Delta-G solvation = -21063.871493 eV Core-core repulsion = 17844.569342 eV Total energy + Delta-G solvation = -3219.302151 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.133 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.07574 -37.79393 -37.52211 -37.14319 -33.72238 -32.72486 -32.34873 -30.29873 -27.17872 -25.31107 -24.51511 -23.45204 -22.60393 -22.44188 -20.50014 -20.05781 -19.68808 -17.74601 -17.09401 -16.49682 -15.79567 -15.42243 -15.04098 -14.86741 -14.42565 -13.97853 -13.80259 -13.42816 -12.93501 -12.54037 -12.23080 -11.83959 -11.77721 -11.59806 -11.39520 -11.28161 -11.18854 -11.10743 -11.01371 -10.93820 -10.75307 -10.51994 -10.23679 -10.08222 -9.95152 -8.90330 -8.87118 -7.68378 -7.64939 -6.23757 -4.69121 1.77178 2.36241 2.89609 3.10887 3.19756 3.20908 3.24107 3.68079 4.03920 4.08056 4.31440 4.39508 4.45078 4.53292 4.59769 4.65955 4.71702 4.87498 4.97235 5.19225 5.25389 5.39782 5.47199 5.55127 5.69788 5.72518 5.79894 5.86150 5.93592 5.98804 6.06889 6.31009 6.34129 6.95025 7.39506 7.78949 7.95257 8.26475 8.89519 8.98030 9.41744 10.53050 10.71008 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.028889 B = 0.004101 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.979366 B = 6826.430715 C = 7020.253852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.558 3.442 10 O -0.578 6.578 11 N -0.759 5.759 12 C 0.221 3.779 13 C 0.183 3.817 14 N -0.282 5.282 15 N -0.296 5.296 16 C 0.201 3.799 17 C -0.086 4.086 18 C -0.151 4.151 19 C -0.159 4.159 20 N -0.438 5.438 21 C 0.045 3.955 22 C -0.171 4.171 23 C -0.153 4.153 24 H 0.268 0.732 25 H 0.381 0.619 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.124 0.876 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.139 0.861 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.509 -15.538 -9.418 20.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.578 4.578 8 H 0.086 0.914 9 C 0.362 3.638 10 O -0.461 6.461 11 N -0.416 5.416 12 C 0.094 3.906 13 C -0.084 4.084 14 N -0.122 5.122 15 N -0.136 5.136 16 C -0.065 4.065 17 C -0.106 4.106 18 C -0.189 4.189 19 C -0.197 4.197 20 N -0.128 5.128 21 C -0.060 4.060 22 C -0.208 4.208 23 C -0.190 4.190 24 H 0.079 0.921 25 H 0.213 0.787 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.142 0.858 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.156 0.844 34 H 0.122 0.878 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.764 -15.648 -7.960 19.196 hybrid contribution 0.477 1.017 -1.316 1.730 sum 8.241 -14.631 -9.276 19.184 Atomic orbital electron populations 1.70022 1.07036 1.27264 1.35157 1.25695 0.94627 1.00282 0.92576 0.86310 0.80498 0.81681 0.78253 1.18784 1.20166 1.20078 1.20869 0.93608 0.89096 1.54271 0.91381 1.18231 0.87183 0.81997 0.76346 1.90614 1.13969 1.86512 1.54962 1.46199 1.08623 1.03687 1.83124 1.19136 0.89584 0.79011 1.02857 1.25190 1.01645 0.99309 0.82261 1.74336 1.08109 1.06145 1.23615 1.74199 1.17702 1.13987 1.07701 1.23635 0.96142 0.94595 0.92150 1.20162 1.02839 0.89552 0.98088 1.23015 0.92461 1.01036 1.02343 1.23046 1.00397 0.92593 1.03698 1.45438 1.33704 1.26233 1.07444 1.22005 1.00605 1.05327 0.78044 1.23414 0.96472 1.02308 0.98610 1.23445 1.02690 0.90350 1.02545 0.92085 0.78742 0.91389 0.89847 0.85787 0.87966 0.87199 0.88249 0.87964 0.84390 0.87818 0.86781 0.86492 0.87016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.55 11.83 55.55 0.66 -21.90 16 2 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 3 Si 0.91 19.90 29.56 -169.99 -5.02 14.87 16 4 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.54 -15.02 9.54 -35.63 -0.34 -15.36 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 9 C 0.56 15.47 7.75 -12.99 -0.10 15.37 16 10 O -0.58 -18.19 15.02 5.20 0.08 -18.12 16 11 N -0.76 -16.89 5.54 -62.90 -0.35 -17.24 16 12 C 0.22 4.37 6.07 -5.20 -0.03 4.34 16 13 C 0.18 3.28 7.38 -154.98 -1.14 2.13 16 14 N -0.28 -5.58 12.21 32.80 0.40 -5.18 16 15 N -0.30 -5.30 11.83 32.80 0.39 -4.91 16 16 C 0.20 2.93 7.44 -154.99 -1.15 1.78 16 17 C -0.09 -0.87 5.79 -91.77 -0.53 -1.40 16 18 C -0.15 -1.34 10.15 -26.74 -0.27 -1.61 16 19 C -0.16 -1.35 10.23 -26.74 -0.27 -1.63 16 20 N -0.44 -6.41 3.03 -103.61 -0.31 -6.72 16 21 C 0.04 0.50 6.00 -67.92 -0.41 0.09 16 22 C -0.17 -1.43 8.96 -26.73 -0.24 -1.67 16 23 C -0.15 -1.72 10.44 -26.73 -0.28 -2.00 16 24 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 25 H 0.38 7.94 8.44 -40.82 -0.34 7.60 16 26 H 0.07 1.30 7.82 -51.92 -0.41 0.90 16 27 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 28 H 0.12 1.00 5.90 -51.93 -0.31 0.69 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.11 1.17 7.92 -51.93 -0.41 0.76 16 31 H 0.10 0.98 8.14 -51.92 -0.42 0.56 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.14 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.10 0.89 7.12 -51.93 -0.37 0.53 16 35 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 324.07 15.07 4.88 4.88 Total: -1.00 -35.27 324.07 -8.91 -44.18 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -4.77 Total: 7.76 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -4.87 Total: 2.36 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.78 Total: -55.95 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.08 Total: -18.12 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.27 -8.91 -44.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320520428.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.608 kcal (2) G-P(sol) polarization free energy of solvation -35.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds