Wall clock time and date at job start Mon Mar 30 2020 02:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86799 * 119.99793 * 2 1 4 4 H 1.48500 * 109.47296 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47585 * 300.00473 * 3 2 1 6 6 H 1.48501 * 109.47000 * 60.00522 * 3 2 1 7 7 C 1.40051 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.46376 * 119.99637 * 359.97438 * 7 2 1 10 10 O 1.21689 * 120.00418 * 359.97438 * 9 7 2 11 11 N 1.34774 * 119.99716 * 180.02562 * 9 7 2 12 12 C 1.46502 * 120.00362 * 179.97438 * 11 9 7 13 13 C 1.50693 * 109.47611 * 179.97438 * 12 11 9 14 14 N 1.30526 * 126.34716 * 84.74141 * 13 12 11 15 15 N 1.28593 * 109.67394 * 180.02562 * 14 13 12 16 16 C 1.30521 * 109.67073 * 0.02562 * 15 14 13 17 17 C 1.50709 * 126.34214 * 179.97438 * 16 15 14 18 18 C 1.52999 * 117.49835 * 351.40854 * 17 16 15 19 19 C 1.52991 * 60.00178 * 107.48718 * 18 17 16 20 20 N 1.35488 * 107.31147 * 0.22501 * 16 15 14 21 21 C 1.46504 * 126.98188 * 179.77116 * 20 16 15 22 22 C 1.53005 * 117.49720 * 311.72922 * 21 20 16 23 23 C 1.53003 * 117.50057 * 243.10754 * 21 20 16 24 24 H 0.97003 * 120.00136 * 359.97438 * 1 2 3 25 25 H 0.97004 * 120.00196 * 359.97438 * 11 9 7 26 26 H 1.09009 * 109.46440 * 59.99653 * 12 11 9 27 27 H 1.08994 * 109.47155 * 300.00280 * 12 11 9 28 28 H 1.08995 * 115.56077 * 205.71398 * 17 16 15 29 29 H 1.08999 * 117.49312 * 214.97912 * 18 17 16 30 30 H 1.08992 * 117.50060 * 359.97438 * 18 17 16 31 31 H 1.09007 * 117.50011 * 252.50957 * 19 18 17 32 32 H 1.09003 * 117.52028 * 107.48138 * 19 18 17 33 33 H 1.08996 * 115.54474 * 97.43392 * 21 20 16 34 34 H 1.08994 * 117.50027 * 0.02562 * 22 21 20 35 35 H 1.09006 * 117.49387 * 145.01846 * 22 21 20 36 36 H 1.08991 * 117.49747 * 214.97918 * 23 21 20 37 37 H 1.09005 * 117.49474 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7006 1.3465 -0.0006 5 1 1.8818 2.3966 -1.2124 6 1 1.8819 2.3964 1.2126 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 0.0004 11 7 1.9490 -3.6476 -0.0005 12 6 1.2166 -4.9165 0.0000 13 6 2.1958 -6.0618 -0.0007 14 7 2.7726 -6.5872 1.0457 15 7 3.5475 -7.5452 0.6777 16 6 3.5008 -7.6741 -0.6203 17 6 4.2616 -8.6794 -1.4460 18 6 5.3297 -9.5134 -0.7357 19 6 4.0110 -10.1617 -1.1615 20 7 2.6458 -6.7330 -1.0884 21 6 2.2795 -6.4922 -2.4863 22 6 3.4148 -6.3959 -3.5076 23 6 2.6517 -5.1369 -3.0909 24 1 -0.4850 0.8401 0.0004 25 1 2.9190 -3.6477 -0.0009 26 1 0.5895 -4.9743 -0.8898 27 1 0.5903 -4.9740 0.8902 28 1 4.4533 -8.3907 -2.4794 29 1 6.2241 -9.7732 -1.3018 30 1 5.4824 -9.3347 0.3286 31 1 3.2957 -10.4098 -0.3772 32 1 4.0374 -10.8481 -2.0078 33 1 1.3457 -6.9497 -2.8130 34 1 4.4341 -6.5121 -3.1395 35 1 3.2278 -6.7902 -4.5065 36 1 1.9630 -4.7029 -3.8156 37 1 3.1696 -4.4245 -2.4486 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320520428.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:48 Heat of formation + Delta-G solvation = 71.724895 kcal Electronic energy + Delta-G solvation = -21064.899140 eV Core-core repulsion = 17844.569342 eV Total energy + Delta-G solvation = -3220.329798 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.133 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.34410 -39.46267 -38.70099 -38.09590 -35.57657 -34.51991 -33.87309 -31.82398 -29.04957 -27.05980 -25.61654 -24.51293 -23.26812 -23.23602 -22.10430 -21.43450 -21.08537 -19.46047 -18.38132 -17.62026 -17.45536 -16.83527 -16.34180 -16.06824 -15.81452 -15.59737 -15.31605 -14.75979 -14.38862 -14.02312 -13.71191 -13.27883 -13.13383 -12.77418 -12.69949 -12.63800 -12.58866 -12.36460 -12.34319 -12.03298 -12.00229 -11.90416 -11.47953 -11.23887 -11.00531 -10.95857 -10.22088 -9.82385 -9.64116 -8.31892 -6.88554 0.53690 1.24571 1.39459 1.40697 1.56598 1.59483 2.24303 2.37416 2.44092 2.89396 2.97747 3.10591 3.22027 3.50282 3.55071 3.62314 3.74374 3.90276 3.91528 4.02081 4.11510 4.42657 4.59397 4.62062 4.68113 4.78620 4.80194 4.88914 4.91222 4.97795 5.04037 5.16857 5.29119 5.30228 5.78872 5.81972 5.98778 6.19136 6.84519 7.39286 7.57631 8.41829 8.63182 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.028889 B = 0.004101 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.979366 B = 6826.430715 C = 7020.253852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.033 3.967 3 Si 0.997 3.003 4 H -0.251 1.251 5 H -0.264 1.264 6 H -0.270 1.270 7 C -0.568 4.568 8 H 0.083 0.917 9 C 0.547 3.453 10 O -0.624 6.624 11 N -0.744 5.744 12 C 0.233 3.767 13 C 0.170 3.830 14 N -0.317 5.317 15 N -0.333 5.333 16 C 0.219 3.781 17 C -0.101 4.101 18 C -0.147 4.147 19 C -0.144 4.144 20 N -0.431 5.431 21 C 0.022 3.978 22 C -0.129 4.129 23 C -0.174 4.174 24 H 0.276 0.724 25 H 0.389 0.611 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.155 0.845 29 H 0.135 0.865 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.137 0.863 33 H 0.157 0.843 34 H 0.107 0.893 35 H 0.154 0.846 36 H 0.124 0.876 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.745 -16.411 -11.883 22.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.183 4.183 3 Si 0.816 3.184 4 H -0.174 1.174 5 H -0.189 1.189 6 H -0.195 1.195 7 C -0.605 4.605 8 H 0.101 0.899 9 C 0.351 3.649 10 O -0.511 6.511 11 N -0.399 5.399 12 C 0.106 3.894 13 C -0.098 4.098 14 N -0.158 5.158 15 N -0.173 5.173 16 C -0.048 4.048 17 C -0.121 4.121 18 C -0.185 4.185 19 C -0.182 4.182 20 N -0.120 5.120 21 C -0.081 4.081 22 C -0.166 4.166 23 C -0.212 4.212 24 H 0.086 0.914 25 H 0.221 0.779 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.172 0.828 29 H 0.153 0.847 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.155 0.845 33 H 0.175 0.825 34 H 0.125 0.875 35 H 0.172 0.828 36 H 0.142 0.858 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.037 -16.566 -10.438 22.003 hybrid contribution -0.194 1.161 -0.569 1.307 sum 9.843 -15.406 -11.007 21.340 Atomic orbital electron populations 1.70167 1.09364 1.29021 1.36039 1.26902 0.95526 1.04701 0.91188 0.84986 0.79192 0.75545 0.78672 1.17396 1.18912 1.19472 1.21355 0.94523 0.89849 1.54763 0.89903 1.18516 0.86783 0.83551 0.76005 1.90570 1.15825 1.87544 1.57163 1.45795 1.08831 1.03623 1.81686 1.18899 0.89753 0.78682 1.02020 1.24582 1.02198 0.99557 0.83492 1.74226 1.09101 1.07240 1.25189 1.74123 1.18754 1.14483 1.09914 1.24499 0.94601 0.94041 0.91663 1.20540 1.03442 0.89350 0.98816 1.23103 0.93758 1.00260 1.01363 1.23133 0.99378 0.91576 1.04149 1.45559 1.32908 1.25401 1.08152 1.22484 1.03184 1.05711 0.76710 1.23591 0.95395 0.98434 0.99159 1.23385 1.04160 0.90664 1.02975 0.91401 0.77852 0.90877 0.91997 0.82788 0.84740 0.89660 0.90223 0.84455 0.82528 0.87501 0.82833 0.85811 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.25 11.83 21.84 0.26 -48.99 16 2 C 0.03 1.80 5.50 85.31 0.47 2.27 16 3 Si 1.00 40.70 29.56 68.60 2.03 42.73 16 4 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 6 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 7 C -0.57 -32.12 9.54 24.83 0.24 -31.88 16 8 H 0.08 4.28 7.85 -2.91 -0.02 4.26 16 9 C 0.55 31.51 7.75 86.36 0.67 32.18 16 10 O -0.62 -41.13 15.02 -4.31 -0.06 -41.20 16 11 N -0.74 -34.54 5.54 -471.15 -2.61 -37.15 16 12 C 0.23 9.70 6.07 85.63 0.52 10.22 16 13 C 0.17 6.30 7.38 137.97 1.02 7.32 16 14 N -0.32 -13.05 12.21 -50.16 -0.61 -13.66 16 15 N -0.33 -12.14 11.83 -50.15 -0.59 -12.74 16 16 C 0.22 6.19 7.44 137.98 1.03 7.21 16 17 C -0.10 -1.74 5.79 -11.54 -0.07 -1.81 16 18 C -0.15 -2.20 10.15 30.59 0.31 -1.89 16 19 C -0.14 -1.99 10.23 30.59 0.31 -1.68 16 20 N -0.43 -12.39 3.03 -481.72 -1.46 -13.85 16 21 C 0.02 0.45 6.00 44.99 0.27 0.72 16 22 C -0.13 -1.68 8.96 30.60 0.27 -1.41 16 23 C -0.17 -3.74 10.44 30.60 0.32 -3.43 16 24 H 0.28 15.00 8.29 -92.71 -0.77 14.23 16 25 H 0.39 16.83 8.44 -92.71 -0.78 16.05 16 26 H 0.07 2.94 7.82 -2.38 -0.02 2.92 16 27 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 28 H 0.15 1.72 5.90 -2.39 -0.01 1.70 16 29 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.74 7.92 -2.39 -0.02 1.72 16 31 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.16 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.11 1.40 7.12 -2.39 -0.02 1.38 16 35 H 0.15 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.08 2.25 8.14 -2.38 -0.02 2.24 16 Total: -1.00 -81.34 324.07 2.63 -78.72 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.32 Total: 28.32 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: 5.36 Total: 17.83 kcal Atomic # 7 Polarization: -121.37 SS G_CDS: -5.02 Total: -126.39 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -0.06 Total: -41.20 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -81.34 2.63 -78.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320520428.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.442 kcal (2) G-P(sol) polarization free energy of solvation -81.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds