Wall clock time and date at job start Mon Mar 30 2020 01:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 119.99766 * 2 1 4 4 H 1.48497 * 109.47139 * 240.00233 * 3 2 1 5 5 H 1.48502 * 109.47021 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46988 * 120.00002 * 3 2 1 7 7 C 1.38806 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99984 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00537 * 359.97438 * 7 2 1 10 10 C 1.47471 * 125.62509 * 359.91425 * 9 7 2 11 11 C 1.54906 * 104.81210 * 204.14198 * 10 9 7 12 12 C 1.55156 * 101.61451 * 323.04512 * 11 10 9 13 13 H 1.09005 * 110.72052 * 277.11432 * 12 11 10 14 14 C 1.52999 * 110.71830 * 154.02508 * 12 11 10 15 15 N 1.46505 * 109.47097 * 174.99627 * 14 12 11 16 16 C 1.34776 * 119.99638 * 179.97438 * 15 14 12 17 17 O 1.21509 * 120.00353 * 0.02562 * 16 15 14 18 18 C 1.48145 * 119.99485 * 180.02562 * 16 15 14 19 19 C 1.40112 * 121.14352 * 180.02562 * 18 16 15 20 20 C 1.38499 * 117.82522 * 179.97438 * 19 18 16 21 21 N 1.31923 * 119.96353 * 359.97438 * 20 19 18 22 22 N 1.28269 * 122.51976 * 0.02562 * 21 20 19 23 23 C 1.31929 * 122.32834 * 359.72006 * 22 21 20 24 24 C 1.47017 * 125.65517 * 179.97438 * 9 7 2 25 25 H 0.96994 * 120.00079 * 359.97438 * 1 2 3 26 26 H 1.09008 * 110.34870 * 85.32328 * 10 9 7 27 27 H 1.09001 * 110.40581 * 322.99363 * 10 9 7 28 28 H 1.09002 * 111.00655 * 204.94912 * 11 10 9 29 29 H 1.09002 * 111.00329 * 81.13838 * 11 10 9 30 30 H 1.09006 * 109.47109 * 294.99535 * 14 12 11 31 31 H 1.09000 * 109.47466 * 54.99291 * 14 12 11 32 32 H 0.97001 * 119.99810 * 0.02562 * 15 14 12 33 33 H 1.08002 * 121.08703 * 359.97438 * 19 18 16 34 34 H 1.07995 * 120.01680 * 180.02562 * 20 19 18 35 35 H 1.07996 * 120.17796 * 180.27147 * 23 22 21 36 36 H 1.08998 * 109.88206 * 59.48273 * 24 9 7 37 37 H 1.09007 * 109.88177 * 298.32145 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1419 -2.5328 0.0018 11 6 -0.4008 -3.9322 0.6134 12 6 0.7787 -4.7524 0.0273 13 1 0.5451 -5.0983 -0.9797 14 6 1.1214 -5.9336 0.9373 15 7 2.1545 -6.7556 0.3022 16 6 2.6164 -7.8577 0.9256 17 8 2.1757 -8.1698 2.0140 18 6 3.6615 -8.6886 0.2836 19 6 4.1585 -9.8392 0.9097 20 6 5.1345 -10.5652 0.2474 21 7 5.5651 -10.1658 -0.9338 22 7 5.1143 -9.1135 -1.5124 23 6 4.1811 -8.3549 -0.9698 24 6 1.9319 -3.7274 -0.0016 25 1 -0.4850 0.8400 0.0004 26 1 -0.5290 -2.4860 -1.0162 27 1 -0.5991 -1.7588 0.6182 28 1 -1.3585 -4.3328 0.2810 29 1 -0.3505 -3.8984 1.7017 30 1 1.4902 -5.5610 1.8930 31 1 0.2283 -6.5362 1.1025 32 1 2.5066 -6.5062 -0.5666 33 1 3.7925 -10.1499 1.8771 34 1 5.5422 -11.4583 0.6974 35 1 3.8237 -7.4785 -1.4899 36 1 2.5596 -3.8509 0.8809 37 1 2.5271 -3.8643 -0.9045 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028827620.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:11 Heat of formation + Delta-G solvation = 49.970081 kcal Electronic energy + Delta-G solvation = -20485.595054 eV Core-core repulsion = 17264.321896 eV Total energy + Delta-G solvation = -3221.273158 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.133 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.53305 -39.69655 -37.75405 -34.99215 -33.65698 -33.09560 -32.41693 -29.91768 -28.44545 -26.31902 -25.24921 -24.84474 -23.42168 -21.30082 -20.18286 -19.88486 -18.40713 -18.00248 -16.92533 -16.71346 -16.04396 -15.74998 -15.54598 -15.12095 -14.77026 -14.51448 -13.87870 -13.83223 -13.62647 -12.99733 -12.58565 -11.88692 -11.82190 -11.59392 -11.38901 -11.01147 -10.85630 -10.79987 -10.62757 -10.53954 -10.46081 -10.19729 -10.10096 -9.99731 -9.83601 -9.58370 -9.24147 -8.69288 -6.89102 -5.70046 -3.12110 -0.05640 0.44687 2.46764 2.75925 3.27332 3.37918 3.42265 3.43450 3.65236 3.90766 4.11310 4.23608 4.43229 4.45155 4.85148 4.96508 5.12525 5.23345 5.29831 5.37374 5.46635 5.60171 5.66555 5.76643 5.92619 5.98273 6.16193 6.26452 6.46665 6.50137 6.61574 6.80882 7.18336 7.45241 7.57441 7.80213 7.83198 8.22594 8.31326 9.17263 9.78160 10.42237 11.33923 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.027794 B = 0.003409 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.177300 B = 8212.639372 C = 8842.659297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.226 4.226 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.116 4.116 13 H 0.078 0.922 14 C 0.131 3.869 15 N -0.712 5.712 16 C 0.559 3.441 17 O -0.528 6.528 18 C -0.129 4.129 19 C -0.059 4.059 20 C 0.037 3.963 21 N -0.230 5.230 22 N -0.240 5.240 23 C 0.071 3.929 24 C 0.141 3.859 25 H 0.253 0.747 26 H 0.013 0.987 27 H 0.107 0.893 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.402 0.598 33 H 0.164 0.836 34 H 0.181 0.819 35 H 0.177 0.823 36 H 0.024 0.976 37 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.355 -18.518 0.612 19.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.354 4.354 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.136 4.136 13 H 0.096 0.904 14 C 0.009 3.991 15 N -0.363 5.363 16 C 0.343 3.657 17 O -0.404 6.404 18 C -0.143 4.143 19 C -0.089 4.089 20 C -0.127 4.127 21 N -0.072 5.072 22 N -0.082 5.082 23 C -0.094 4.094 24 C 0.014 3.986 25 H 0.064 0.936 26 H 0.031 0.969 27 H 0.125 0.875 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.238 0.762 33 H 0.181 0.819 34 H 0.198 0.802 35 H 0.194 0.806 36 H 0.042 0.958 37 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 4.987 -18.729 0.102 19.382 hybrid contribution -0.311 1.230 0.719 1.458 sum 4.676 -17.499 0.821 18.132 Atomic orbital electron populations 1.69780 1.04904 1.24979 1.57423 1.24790 0.95738 0.97762 1.02273 0.86145 0.78419 0.82959 0.77928 1.21171 1.21524 1.21129 1.19029 0.90482 0.82480 1.43407 0.90565 1.44497 1.01968 0.99671 1.86898 1.21951 0.84654 0.92444 0.98260 1.23012 0.95432 0.98597 1.00366 1.22472 0.98562 0.93874 0.98651 0.90390 1.21598 0.89803 0.91020 0.96726 1.46018 1.41429 1.25684 1.23149 1.17886 0.81659 0.80999 0.85164 1.90802 1.58713 1.70849 1.20074 1.21322 0.98954 0.97552 0.96513 1.22660 0.93282 0.91950 1.01021 1.24425 0.94537 1.00729 0.92975 1.72916 1.19466 1.06949 1.07859 1.73105 1.07910 0.99970 1.27168 1.24620 0.92901 0.99558 0.92330 1.21340 0.93387 0.86069 0.97765 0.93619 0.96928 0.87485 0.92020 0.91762 0.90668 0.91059 0.76215 0.81851 0.80217 0.80624 0.95813 0.96343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.44 10.09 55.49 0.56 -25.88 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 3 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.18 10.27 -15.06 -0.15 -6.34 16 8 H 0.08 2.02 7.83 -52.48 -0.41 1.60 16 9 N -0.60 -14.97 3.40 -170.04 -0.58 -15.54 16 10 C 0.15 3.53 5.89 -2.50 -0.01 3.52 16 11 C -0.13 -2.35 6.53 -24.58 -0.16 -2.51 16 12 C -0.12 -1.77 2.95 -88.79 -0.26 -2.03 16 13 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 14 C 0.13 1.72 5.02 -4.04 -0.02 1.70 16 15 N -0.71 -7.94 5.43 -61.15 -0.33 -8.27 16 16 C 0.56 6.68 7.80 -12.19 -0.10 6.58 16 17 O -0.53 -7.96 16.49 5.36 0.09 -7.88 16 18 C -0.13 -1.27 5.92 -104.57 -0.62 -1.89 16 19 C -0.06 -0.49 9.77 -38.78 -0.38 -0.87 16 20 C 0.04 0.29 11.30 -17.42 -0.20 0.09 16 21 N -0.23 -2.50 11.48 30.53 0.35 -2.15 16 22 N -0.24 -2.76 11.49 30.78 0.35 -2.41 16 23 C 0.07 0.67 10.84 -16.95 -0.18 0.49 16 24 C 0.14 2.70 6.76 -3.07 -0.02 2.68 16 25 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.01 0.31 8.14 -51.92 -0.42 -0.11 16 27 H 0.11 2.84 5.88 -51.93 -0.31 2.53 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.06 1.12 8.05 -51.93 -0.42 0.70 16 30 H 0.08 1.10 7.95 -51.93 -0.41 0.69 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.40 3.62 6.62 -40.82 -0.27 3.35 16 33 H 0.16 1.12 7.80 -52.49 -0.41 0.71 16 34 H 0.18 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.18 1.20 6.53 -52.49 -0.34 0.85 16 36 H 0.02 0.47 7.70 -51.93 -0.40 0.07 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 313.24 15.07 4.72 4.72 Total: -1.00 -33.05 313.24 -6.70 -39.75 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -4.64 Total: -0.14 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -2.20 Total: 1.04 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: 0.35 Total: -54.25 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.09 Total: -7.88 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.05 -6.70 -39.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028827620.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.720 kcal (2) G-P(sol) polarization free energy of solvation -33.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds