Wall clock time and date at job start Mon Mar 30 2020 01:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 119.99766 * 2 1 4 4 H 1.48497 * 109.47139 * 240.00233 * 3 2 1 5 5 H 1.48502 * 109.47021 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46988 * 120.00002 * 3 2 1 7 7 C 1.38806 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99984 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00537 * 359.97438 * 7 2 1 10 10 C 1.47471 * 125.62509 * 359.91425 * 9 7 2 11 11 C 1.54906 * 104.81210 * 204.14198 * 10 9 7 12 12 C 1.55156 * 101.61451 * 323.04512 * 11 10 9 13 13 H 1.09005 * 110.72052 * 277.11432 * 12 11 10 14 14 C 1.52999 * 110.71830 * 154.02508 * 12 11 10 15 15 N 1.46505 * 109.47097 * 174.99627 * 14 12 11 16 16 C 1.34776 * 119.99638 * 179.97438 * 15 14 12 17 17 O 1.21509 * 120.00353 * 0.02562 * 16 15 14 18 18 C 1.48145 * 119.99485 * 180.02562 * 16 15 14 19 19 C 1.40112 * 121.14352 * 180.02562 * 18 16 15 20 20 C 1.38499 * 117.82522 * 179.97438 * 19 18 16 21 21 N 1.31923 * 119.96353 * 359.97438 * 20 19 18 22 22 N 1.28269 * 122.51976 * 0.02562 * 21 20 19 23 23 C 1.31929 * 122.32834 * 359.72006 * 22 21 20 24 24 C 1.47017 * 125.65517 * 179.97438 * 9 7 2 25 25 H 0.96994 * 120.00079 * 359.97438 * 1 2 3 26 26 H 1.09008 * 110.34870 * 85.32328 * 10 9 7 27 27 H 1.09001 * 110.40581 * 322.99363 * 10 9 7 28 28 H 1.09002 * 111.00655 * 204.94912 * 11 10 9 29 29 H 1.09002 * 111.00329 * 81.13838 * 11 10 9 30 30 H 1.09006 * 109.47109 * 294.99535 * 14 12 11 31 31 H 1.09000 * 109.47466 * 54.99291 * 14 12 11 32 32 H 0.97001 * 119.99810 * 0.02562 * 15 14 12 33 33 H 1.08002 * 121.08703 * 359.97438 * 19 18 16 34 34 H 1.07995 * 120.01680 * 180.02562 * 20 19 18 35 35 H 1.07996 * 120.17796 * 180.27147 * 23 22 21 36 36 H 1.08998 * 109.88206 * 59.48273 * 24 9 7 37 37 H 1.09007 * 109.88177 * 298.32145 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1419 -2.5328 0.0018 11 6 -0.4008 -3.9322 0.6134 12 6 0.7787 -4.7524 0.0273 13 1 0.5451 -5.0983 -0.9797 14 6 1.1214 -5.9336 0.9373 15 7 2.1545 -6.7556 0.3022 16 6 2.6164 -7.8577 0.9256 17 8 2.1757 -8.1698 2.0140 18 6 3.6615 -8.6886 0.2836 19 6 4.1585 -9.8392 0.9097 20 6 5.1345 -10.5652 0.2474 21 7 5.5651 -10.1658 -0.9338 22 7 5.1143 -9.1135 -1.5124 23 6 4.1811 -8.3549 -0.9698 24 6 1.9319 -3.7274 -0.0016 25 1 -0.4850 0.8400 0.0004 26 1 -0.5290 -2.4860 -1.0162 27 1 -0.5991 -1.7588 0.6182 28 1 -1.3585 -4.3328 0.2810 29 1 -0.3505 -3.8984 1.7017 30 1 1.4902 -5.5610 1.8930 31 1 0.2283 -6.5362 1.1025 32 1 2.5066 -6.5062 -0.5666 33 1 3.7925 -10.1499 1.8771 34 1 5.5422 -11.4583 0.6974 35 1 3.8237 -7.4785 -1.4899 36 1 2.5596 -3.8509 0.8809 37 1 2.5271 -3.8643 -0.9045 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028827620.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:11 Heat of formation + Delta-G solvation = 26.370795 kcal Electronic energy + Delta-G solvation = -20486.618396 eV Core-core repulsion = 17264.321896 eV Total energy + Delta-G solvation = -3222.296499 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.27491 -40.66861 -39.24630 -36.22978 -34.64706 -34.17495 -33.59371 -31.60985 -29.94318 -27.62434 -26.55600 -25.64482 -24.77452 -22.40823 -21.75021 -21.22024 -19.37793 -18.78765 -18.72980 -17.44358 -17.19779 -16.75411 -16.66372 -16.35416 -16.04607 -15.64836 -15.50902 -14.71652 -14.46621 -14.33256 -14.25519 -13.53543 -13.40710 -13.15496 -12.83363 -12.65504 -12.09106 -12.05386 -11.96917 -11.82711 -11.64175 -11.54274 -11.36648 -11.31220 -11.24143 -10.76179 -10.72376 -10.23286 -8.87174 -7.77350 -5.21209 -0.79351 -0.19226 1.46802 1.49315 1.55729 1.60585 1.85708 2.49808 2.54452 3.01740 3.18638 3.32234 3.46408 3.49007 3.64198 3.78631 3.82035 3.97078 4.07330 4.34167 4.45260 4.54433 4.65700 4.71044 4.73172 4.80629 4.92189 5.02668 5.07935 5.14533 5.23839 5.40100 5.48260 5.67797 5.84073 6.29506 6.33266 6.93453 7.11922 7.52971 7.80207 8.42859 9.24223 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.027794 B = 0.003409 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.177300 B = 8212.639372 C = 8842.659297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.067 4.067 3 Si 0.978 3.022 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.241 4.241 8 H 0.079 0.921 9 N -0.629 5.629 10 C 0.151 3.849 11 C -0.122 4.122 12 C -0.095 4.095 13 H 0.100 0.900 14 C 0.143 3.857 15 N -0.705 5.705 16 C 0.564 3.436 17 O -0.561 6.561 18 C -0.140 4.140 19 C -0.051 4.051 20 C 0.048 3.952 21 N -0.258 5.258 22 N -0.272 5.272 23 C 0.075 3.925 24 C 0.135 3.865 25 H 0.247 0.753 26 H -0.010 1.010 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.414 0.586 33 H 0.180 0.820 34 H 0.219 0.781 35 H 0.197 0.803 36 H 0.021 0.979 37 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.109 -20.287 0.677 20.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.806 3.194 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.370 4.370 8 H 0.097 0.903 9 N -0.355 5.355 10 C 0.026 3.974 11 C -0.161 4.161 12 C -0.114 4.114 13 H 0.118 0.882 14 C 0.020 3.980 15 N -0.356 5.356 16 C 0.350 3.650 17 O -0.441 6.441 18 C -0.155 4.155 19 C -0.082 4.082 20 C -0.116 4.116 21 N -0.099 5.099 22 N -0.112 5.112 23 C -0.091 4.091 24 C 0.010 3.990 25 H 0.056 0.944 26 H 0.008 0.992 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.252 0.748 33 H 0.197 0.803 34 H 0.236 0.764 35 H 0.214 0.786 36 H 0.039 0.961 37 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 5.778 -20.526 0.129 21.324 hybrid contribution -0.517 1.724 0.726 1.941 sum 5.261 -18.802 0.856 19.543 Atomic orbital electron populations 1.70045 1.06137 1.25062 1.58569 1.25607 0.96626 1.00919 1.02775 0.85160 0.77154 0.78921 0.78150 1.20414 1.21975 1.20441 1.19412 0.90993 0.83970 1.42605 0.90297 1.44825 1.02859 1.00996 1.86847 1.21747 0.84014 0.95010 0.96644 1.22842 0.97825 0.95323 1.00095 1.22308 0.95698 0.93244 1.00182 0.88205 1.21330 0.90788 0.90469 0.95444 1.45877 1.40939 1.25265 1.23528 1.18071 0.81495 0.80847 0.84611 1.90789 1.59978 1.71732 1.21555 1.21201 0.99089 0.98189 0.96983 1.22954 0.92669 0.91134 1.01394 1.24982 0.93582 1.01343 0.91726 1.72827 1.20457 1.07287 1.09345 1.73048 1.09023 1.00817 1.28263 1.24875 0.92221 0.99814 0.92179 1.21548 0.94826 0.84692 0.97933 0.94353 0.99175 0.91257 0.89102 0.91780 0.92145 0.89747 0.74842 0.80302 0.76413 0.78607 0.96053 0.95210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.95 10.09 21.65 0.22 -55.73 16 2 C -0.07 -3.75 5.49 84.86 0.47 -3.28 16 3 Si 0.98 45.28 29.55 68.60 2.03 47.30 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 7 C -0.24 -13.31 10.27 84.03 0.86 -12.45 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.63 -31.31 3.40 -691.89 -2.35 -33.66 16 10 C 0.15 7.12 5.89 86.85 0.51 7.63 16 11 C -0.12 -4.06 6.53 31.98 0.21 -3.85 16 12 C -0.10 -2.67 2.95 -9.61 -0.03 -2.70 16 13 H 0.10 2.43 8.14 -2.38 -0.02 2.42 16 14 C 0.14 3.39 5.02 86.38 0.43 3.82 16 15 N -0.70 -13.93 5.43 -465.67 -2.53 -16.46 16 16 C 0.56 12.30 7.80 86.88 0.68 12.98 16 17 O -0.56 -15.95 16.49 -3.74 -0.06 -16.01 16 18 C -0.14 -2.48 5.92 -19.83 -0.12 -2.60 16 19 C -0.05 -0.73 9.77 22.79 0.22 -0.50 16 20 C 0.05 0.62 11.30 84.74 0.96 1.58 16 21 N -0.26 -5.20 11.48 -57.34 -0.66 -5.85 16 22 N -0.27 -5.88 11.49 -56.53 -0.65 -6.53 16 23 C 0.07 1.28 10.84 85.04 0.92 2.20 16 24 C 0.13 5.01 6.76 86.73 0.59 5.60 16 25 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 26 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 27 H 0.07 3.81 5.88 -2.39 -0.01 3.80 16 28 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.06 2.15 8.05 -2.39 -0.02 2.13 16 30 H 0.06 1.66 7.95 -2.38 -0.02 1.64 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.41 6.27 6.62 -92.71 -0.61 5.65 16 33 H 0.18 1.95 7.80 -2.91 -0.02 1.93 16 34 H 0.22 0.89 8.06 -2.91 -0.02 0.87 16 35 H 0.20 2.24 6.53 -2.91 -0.02 2.22 16 36 H 0.02 0.81 7.70 -2.39 -0.02 0.79 16 37 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -73.26 313.24 2.18 -71.08 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.48 Total: 7.43 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 5.70 Total: 8.43 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -5.97 Total: -118.23 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.06 Total: -16.01 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -73.26 2.18 -71.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028827620.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.447 kcal (2) G-P(sol) polarization free energy of solvation -73.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds