Wall clock time and date at job start Mon Mar 30 2020 01:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47021 * 2 1 4 4 C 1.50710 * 109.46993 * 119.99771 * 2 1 3 5 5 C 1.35350 * 126.37935 * 324.68676 * 4 2 1 6 6 C 1.41541 * 105.49991 * 179.97438 * 5 4 2 7 7 C 1.47611 * 126.52324 * 180.16213 * 6 5 4 8 8 O 1.21602 * 119.99923 * 355.50406 * 7 6 5 9 9 N 1.34770 * 120.00073 * 175.50339 * 7 6 5 10 10 C 1.36909 * 120.00268 * 5.32027 * 9 7 6 11 11 H 1.08006 * 120.00300 * 34.54103 * 10 9 7 12 12 C 1.39027 * 120.00170 * 214.55020 * 10 9 7 13 13 N 1.31375 * 119.99930 * 5.54204 * 12 10 9 14 14 Si 1.86798 * 119.99964 * 185.54518 * 12 10 9 15 15 H 1.48507 * 109.47319 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47140 * 119.99843 * 14 12 10 17 17 H 1.48501 * 109.47189 * 239.99785 * 14 12 10 18 18 C 1.46500 * 119.99978 * 185.31487 * 9 7 6 19 19 C 1.47201 * 109.47141 * 83.33071 * 18 9 7 20 20 N 8.42355 * 85.66985 * 126.37126 * 2 1 3 21 21 N 1.31859 * 106.95175 * 0.35049 * 6 5 4 22 22 N 1.28470 * 110.06629 * 359.77902 * 21 6 5 23 23 C 1.46492 * 124.87855 * 180.02562 * 22 21 6 24 24 H 1.09006 * 109.47203 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47265 * 60.00663 * 1 2 3 26 26 H 1.08999 * 109.47417 * 299.99993 * 1 2 3 27 27 H 1.08991 * 109.47149 * 239.99877 * 2 1 3 28 28 H 1.09004 * 109.47477 * 59.99785 * 3 2 1 29 29 H 1.09005 * 109.47454 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47068 * 299.99843 * 3 2 1 31 31 H 1.08002 * 127.24862 * 0.03871 * 5 4 2 32 32 H 0.96998 * 120.00071 * 179.97438 * 13 12 10 33 33 H 1.09008 * 109.47029 * 203.32549 * 18 9 7 34 34 H 1.09000 * 109.47649 * 323.32815 * 18 9 7 35 35 H 1.09007 * 109.47099 * 269.97387 * 23 22 21 36 36 H 1.08999 * 109.47559 * 29.97800 * 23 22 21 37 37 H 1.09006 * 109.47166 * 149.98305 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 1.4615 -0.6915 2.4577 6 6 2.2901 -1.4993 3.2728 7 6 2.0908 -1.7984 4.7044 8 8 1.1839 -1.2673 5.3161 9 7 2.9140 -2.6602 5.3337 10 6 3.9992 -3.1744 4.6762 11 1 4.5320 -2.5691 3.9576 12 6 4.4154 -4.4757 4.9332 13 7 3.7054 -5.2484 5.7237 14 14 5.9841 -5.1256 4.1547 15 1 6.5944 -4.0659 3.3121 16 1 6.9387 -5.5218 5.2211 17 1 5.6661 -6.3060 3.3115 18 6 2.6477 -3.0467 6.7215 19 6 1.6599 -4.1378 6.7460 20 7 0.8940 -4.9810 6.7632 21 7 3.2761 -1.9304 2.5108 22 7 3.1397 -1.4786 1.3159 23 6 4.0538 -1.7572 0.2056 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 0.5625 -0.1706 2.7525 32 1 3.9955 -6.1565 5.9028 33 1 3.5730 -3.3839 7.1887 34 1 2.2557 -2.1894 7.2687 35 1 4.8358 -0.9982 0.1795 36 1 4.5054 -2.7395 0.3443 37 1 3.5004 -1.7409 -0.7335 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266950903.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:20 Heat of formation + Delta-G solvation = 80.239894 kcal Electronic energy + Delta-G solvation = -21593.842792 eV Core-core repulsion = 18373.882232 eV Total energy + Delta-G solvation = -3219.960560 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.133 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.03854 -38.46775 -35.62267 -35.39122 -34.18732 -32.89886 -31.55121 -29.21897 -28.03108 -27.19979 -26.41703 -24.75614 -22.63790 -21.73267 -19.70239 -18.84128 -17.86971 -16.59323 -16.01158 -15.84580 -15.69465 -14.53246 -14.40476 -14.32279 -13.68548 -13.51915 -13.39153 -13.06635 -12.93918 -12.51986 -12.40822 -12.22971 -12.14027 -11.76735 -11.50624 -11.39885 -11.22329 -11.16338 -11.09028 -10.83392 -10.79405 -10.40636 -10.11163 -9.69664 -9.14184 -8.79138 -8.38846 -8.32874 -7.82683 -6.41647 -4.05853 2.42446 2.74605 3.00969 3.15751 3.20943 3.25763 3.84444 4.14677 4.35046 4.47655 4.59247 4.79133 4.81949 4.98917 5.05332 5.08646 5.25538 5.37417 5.52548 5.56375 5.59499 5.67333 5.75390 5.79877 5.84765 6.08045 6.19034 6.20989 6.34433 6.51388 6.57181 6.64650 7.11370 7.31746 7.58306 7.68296 8.44067 8.67875 9.05759 9.09008 9.37262 9.75587 10.63880 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.018108 B = 0.006623 C = 0.005236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.925068 B = 4226.859730 C = 5346.471359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.020 4.020 3 C -0.142 4.142 4 C -0.003 4.003 5 C -0.185 4.185 6 C 0.021 3.979 7 C 0.546 3.454 8 O -0.593 6.593 9 N -0.428 5.428 10 C -0.315 4.315 11 H 0.122 0.878 12 C 0.037 3.963 13 N -0.874 5.874 14 Si 0.928 3.072 15 H -0.266 1.266 16 H -0.281 1.281 17 H -0.284 1.284 18 C 0.233 3.767 19 C 0.260 3.740 20 N -0.485 5.485 21 N -0.228 5.228 22 N -0.301 5.301 23 C 0.091 3.909 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.151 0.849 32 H 0.273 0.727 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 9.804 -11.953 15.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.040 4.040 3 C -0.199 4.199 4 C -0.126 4.126 5 C -0.213 4.213 6 C -0.140 4.140 7 C 0.334 3.666 8 O -0.477 6.477 9 N -0.147 5.147 10 C -0.444 4.444 11 H 0.139 0.861 12 C -0.168 4.168 13 N -0.512 5.512 14 Si 0.755 3.245 15 H -0.190 1.190 16 H -0.207 1.207 17 H -0.210 1.210 18 C 0.107 3.893 19 C -0.058 4.058 20 N -0.166 5.166 21 N -0.061 5.061 22 N -0.089 5.089 23 C -0.051 4.051 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.168 0.832 32 H 0.084 0.916 33 H 0.134 0.866 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.010 7.933 -11.616 14.209 hybrid contribution 0.560 -0.019 -0.582 0.808 sum 2.570 7.914 -12.198 14.766 Atomic orbital electron populations 1.21808 0.93548 1.02448 1.02150 1.19565 0.96403 0.95167 0.92868 1.21829 1.00948 0.94960 1.02203 1.21171 0.92169 1.01613 0.97661 1.21346 1.03157 1.05455 0.91366 1.21862 0.94855 1.01690 0.95570 1.17137 0.81989 0.83590 0.83855 1.90647 1.34186 1.56806 1.66061 1.43395 1.23104 1.38907 1.09271 1.20203 1.04672 0.96797 1.22705 0.86054 1.25520 0.99130 0.95558 0.96552 1.69633 1.37450 1.08434 1.35721 0.85826 0.80921 0.78760 0.78949 1.19050 1.20720 1.20994 1.18478 0.94988 0.90084 0.85764 1.29146 0.91358 0.93145 0.92131 1.80945 1.14974 1.11796 1.08885 1.74331 1.23220 1.18650 0.89903 1.45608 1.19151 1.35440 1.08681 1.21953 0.92851 1.03910 0.86349 0.92286 0.92326 0.91753 0.90796 0.91890 0.92854 0.92275 0.83168 0.91633 0.86590 0.89273 0.90483 0.88825 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.79 37.16 0.33 -1.13 16 2 C -0.02 -0.22 3.09 -91.77 -0.28 -0.50 16 3 C -0.14 -1.35 9.17 37.16 0.34 -1.01 16 4 C 0.00 -0.04 5.84 -82.20 -0.48 -0.52 16 5 C -0.18 -3.51 9.96 -39.35 -0.39 -3.90 16 6 C 0.02 0.47 6.87 -82.77 -0.57 -0.10 16 7 C 0.55 13.71 7.56 -12.44 -0.09 13.62 16 8 O -0.59 -15.65 16.59 5.28 0.09 -15.57 16 9 N -0.43 -10.65 2.56 -119.09 -0.31 -10.96 16 10 C -0.31 -7.82 8.13 -14.99 -0.12 -7.94 16 11 H 0.12 2.99 5.71 -52.48 -0.30 2.69 16 12 C 0.04 0.93 5.16 -17.45 -0.09 0.84 16 13 N -0.87 -22.87 9.38 55.50 0.52 -22.35 16 14 Si 0.93 19.57 29.56 -169.99 -5.02 14.54 16 15 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 16 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 C 0.23 5.34 5.10 -6.83 -0.03 5.30 16 19 C 0.26 6.61 13.09 -20.65 -0.27 6.34 16 20 N -0.49 -13.07 18.56 42.28 0.78 -12.28 16 21 N -0.23 -4.83 8.71 33.41 0.29 -4.54 16 22 N -0.30 -5.03 3.70 -63.85 -0.24 -5.27 16 23 C 0.09 1.02 11.10 59.84 0.66 1.69 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.69 7.35 -51.93 -0.38 0.31 16 27 H 0.07 0.69 6.86 -51.93 -0.36 0.33 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.15 2.69 7.48 -52.49 -0.39 2.30 16 32 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.12 2.53 7.17 -51.92 -0.37 2.16 16 34 H 0.09 1.83 7.56 -51.93 -0.39 1.44 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.08 0.70 6.88 -51.93 -0.36 0.34 16 LS Contribution 318.55 15.07 4.80 4.80 Total: -1.00 -32.70 318.55 -4.73 -37.43 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -4.65 Total: 1.52 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: -1.00 Total: 12.67 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 1.06 Total: -55.40 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.09 Total: -15.57 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.70 -4.73 -37.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266950903.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.666 kcal (2) G-P(sol) polarization free energy of solvation -32.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds