Wall clock time and date at job start Mon Mar 30 2020 01:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47021 * 2 1 4 4 C 1.50710 * 109.46993 * 119.99771 * 2 1 3 5 5 C 1.35350 * 126.37935 * 324.68676 * 4 2 1 6 6 C 1.41541 * 105.49991 * 179.97438 * 5 4 2 7 7 C 1.47611 * 126.52324 * 180.16213 * 6 5 4 8 8 O 1.21602 * 119.99923 * 355.50406 * 7 6 5 9 9 N 1.34770 * 120.00073 * 175.50339 * 7 6 5 10 10 C 1.36909 * 120.00268 * 5.32027 * 9 7 6 11 11 H 1.08006 * 120.00300 * 34.54103 * 10 9 7 12 12 C 1.39027 * 120.00170 * 214.55020 * 10 9 7 13 13 N 1.31375 * 119.99930 * 5.54204 * 12 10 9 14 14 Si 1.86798 * 119.99964 * 185.54518 * 12 10 9 15 15 H 1.48507 * 109.47319 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47140 * 119.99843 * 14 12 10 17 17 H 1.48501 * 109.47189 * 239.99785 * 14 12 10 18 18 C 1.46500 * 119.99978 * 185.31487 * 9 7 6 19 19 C 1.47201 * 109.47141 * 83.33071 * 18 9 7 20 20 N 8.42355 * 85.66985 * 126.37126 * 2 1 3 21 21 N 1.31859 * 106.95175 * 0.35049 * 6 5 4 22 22 N 1.28470 * 110.06629 * 359.77902 * 21 6 5 23 23 C 1.46492 * 124.87855 * 180.02562 * 22 21 6 24 24 H 1.09006 * 109.47203 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47265 * 60.00663 * 1 2 3 26 26 H 1.08999 * 109.47417 * 299.99993 * 1 2 3 27 27 H 1.08991 * 109.47149 * 239.99877 * 2 1 3 28 28 H 1.09004 * 109.47477 * 59.99785 * 3 2 1 29 29 H 1.09005 * 109.47454 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47068 * 299.99843 * 3 2 1 31 31 H 1.08002 * 127.24862 * 0.03871 * 5 4 2 32 32 H 0.96998 * 120.00071 * 179.97438 * 13 12 10 33 33 H 1.09008 * 109.47029 * 203.32549 * 18 9 7 34 34 H 1.09000 * 109.47649 * 323.32815 * 18 9 7 35 35 H 1.09007 * 109.47099 * 269.97387 * 23 22 21 36 36 H 1.08999 * 109.47559 * 29.97800 * 23 22 21 37 37 H 1.09006 * 109.47166 * 149.98305 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 1.4615 -0.6915 2.4577 6 6 2.2901 -1.4993 3.2728 7 6 2.0908 -1.7984 4.7044 8 8 1.1839 -1.2673 5.3161 9 7 2.9140 -2.6602 5.3337 10 6 3.9992 -3.1744 4.6762 11 1 4.5320 -2.5691 3.9576 12 6 4.4154 -4.4757 4.9332 13 7 3.7054 -5.2484 5.7237 14 14 5.9841 -5.1256 4.1547 15 1 6.5944 -4.0659 3.3121 16 1 6.9387 -5.5218 5.2211 17 1 5.6661 -6.3060 3.3115 18 6 2.6477 -3.0467 6.7215 19 6 1.6599 -4.1378 6.7460 20 7 0.8940 -4.9810 6.7632 21 7 3.2761 -1.9304 2.5108 22 7 3.1397 -1.4786 1.3159 23 6 4.0538 -1.7572 0.2056 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 0.5625 -0.1706 2.7525 32 1 3.9955 -6.1565 5.9028 33 1 3.5730 -3.3839 7.1887 34 1 2.2557 -2.1894 7.2687 35 1 4.8358 -0.9982 0.1795 36 1 4.5054 -2.7395 0.3443 37 1 3.5004 -1.7409 -0.7335 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266950903.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:20 Heat of formation + Delta-G solvation = 59.786741 kcal Electronic energy + Delta-G solvation = -21594.729707 eV Core-core repulsion = 18373.882232 eV Total energy + Delta-G solvation = -3220.847475 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.133 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.44438 -40.35553 -37.36849 -36.60195 -36.17505 -34.20024 -33.46666 -30.58616 -29.68902 -27.96386 -27.85101 -26.58110 -23.88171 -23.15229 -21.20557 -20.39817 -19.56486 -18.29842 -17.53428 -17.49627 -16.99494 -16.34025 -16.09474 -15.39664 -15.20808 -15.01606 -14.63227 -14.47228 -14.43172 -13.90922 -13.77202 -13.48112 -13.29205 -13.27377 -13.03078 -12.93030 -12.87888 -12.70130 -12.40381 -12.14057 -12.04462 -11.94431 -11.68937 -11.33544 -10.99355 -10.68666 -9.91211 -9.70970 -9.67640 -8.31303 -6.00972 0.84723 1.30278 1.48391 1.49589 1.61947 1.77476 1.99625 2.28417 2.40443 2.65068 3.08328 3.15362 3.62793 3.68699 3.73717 4.01126 4.24727 4.34137 4.42168 4.51016 4.62693 4.70838 4.73358 4.78873 4.84036 4.88388 4.91362 5.04817 5.10440 5.21650 5.43753 5.48299 5.50734 5.68110 5.78396 6.12960 6.53742 7.04610 7.06928 7.24184 7.50933 7.84712 8.73598 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.018108 B = 0.006623 C = 0.005236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.925068 B = 4226.859730 C = 5346.471359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.017 4.017 3 C -0.138 4.138 4 C 0.024 3.976 5 C -0.210 4.210 6 C -0.022 4.022 7 C 0.535 3.465 8 O -0.619 6.619 9 N -0.439 5.439 10 C -0.319 4.319 11 H 0.124 0.876 12 C -0.002 4.002 13 N -0.905 5.905 14 Si 0.992 3.008 15 H -0.252 1.252 16 H -0.276 1.276 17 H -0.293 1.293 18 C 0.233 3.767 19 C 0.269 3.731 20 N -0.519 5.519 21 N -0.253 5.253 22 N -0.294 5.294 23 C 0.075 3.925 24 H 0.046 0.954 25 H 0.088 0.912 26 H 0.051 0.949 27 H 0.104 0.896 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.149 0.851 32 H 0.269 0.731 33 H 0.126 0.874 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.765 10.925 -15.070 18.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.037 4.037 3 C -0.196 4.196 4 C -0.101 4.101 5 C -0.239 4.239 6 C -0.181 4.181 7 C 0.325 3.675 8 O -0.505 6.505 9 N -0.157 5.157 10 C -0.448 4.448 11 H 0.141 0.859 12 C -0.204 4.204 13 N -0.544 5.544 14 Si 0.816 3.184 15 H -0.176 1.176 16 H -0.201 1.201 17 H -0.220 1.220 18 C 0.106 3.894 19 C -0.048 4.048 20 N -0.200 5.200 21 N -0.088 5.088 22 N -0.082 5.082 23 C -0.064 4.064 24 H 0.065 0.935 25 H 0.107 0.893 26 H 0.071 0.929 27 H 0.122 0.878 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.167 0.833 32 H 0.079 0.921 33 H 0.144 0.856 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.313 9.065 -14.734 17.614 hybrid contribution 0.140 -0.286 0.254 0.407 sum 3.452 8.779 -14.481 17.282 Atomic orbital electron populations 1.21827 0.93098 1.01962 1.03117 1.19820 0.96715 0.95851 0.91343 1.21812 1.01096 0.93718 1.02959 1.21801 0.90545 0.99590 0.98167 1.21470 1.03667 1.06205 0.92540 1.21726 0.97088 1.04325 0.94915 1.17644 0.81577 0.83170 0.85138 1.90594 1.35135 1.57656 1.67067 1.43600 1.23294 1.38912 1.09917 1.20380 1.04486 0.97090 1.22813 0.85918 1.26279 1.01815 0.95459 0.96821 1.69744 1.38980 1.08452 1.37175 0.84865 0.77508 0.77831 0.78153 1.17561 1.20128 1.21974 1.18699 0.94933 0.90082 0.85645 1.29670 0.91007 0.92998 0.91136 1.80918 1.16174 1.12940 1.09991 1.74147 1.23363 1.19631 0.91684 1.46086 1.19717 1.33990 1.08369 1.22488 0.93345 1.04658 0.85882 0.93521 0.89280 0.92950 0.87770 0.93389 0.92606 0.89349 0.83298 0.92087 0.85617 0.87181 0.87984 0.89122 0.85799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.79 71.98 0.63 -1.89 16 2 C -0.02 -0.32 3.09 -11.54 -0.04 -0.35 16 3 C -0.14 -2.10 9.17 71.98 0.66 -1.44 16 4 C 0.02 0.70 5.84 41.40 0.24 0.94 16 5 C -0.21 -8.04 9.96 22.42 0.22 -7.81 16 6 C -0.02 -1.02 6.87 42.43 0.29 -0.73 16 7 C 0.53 27.71 7.56 86.72 0.66 28.36 16 8 O -0.62 -33.80 16.59 -4.04 -0.07 -33.87 16 9 N -0.44 -22.31 2.56 -648.94 -1.66 -23.97 16 10 C -0.32 -15.98 8.13 84.09 0.68 -15.30 16 11 H 0.12 6.05 5.71 -2.91 -0.02 6.04 16 12 C 0.00 -0.12 5.16 84.95 0.44 0.32 16 13 N -0.90 -47.88 9.38 21.68 0.20 -47.67 16 14 Si 0.99 39.76 29.56 68.60 2.03 41.79 16 15 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 16 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 17 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 18 C 0.23 10.85 5.10 84.57 0.43 11.28 16 19 C 0.27 14.00 13.09 89.40 1.17 15.17 16 20 N -0.52 -28.62 18.56 20.05 0.37 -28.25 16 21 N -0.25 -10.63 8.71 -48.20 -0.42 -11.05 16 22 N -0.29 -9.19 3.70 -355.92 -1.32 -10.50 16 23 C 0.08 1.41 11.10 127.77 1.42 2.82 16 24 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.05 1.05 7.35 -2.39 -0.02 1.03 16 27 H 0.10 1.34 6.86 -2.39 -0.02 1.32 16 28 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.15 5.51 7.48 -2.91 -0.02 5.49 16 32 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 33 H 0.13 5.57 7.17 -2.38 -0.02 5.55 16 34 H 0.11 4.61 7.56 -2.39 -0.02 4.59 16 35 H 0.10 1.46 8.14 -2.38 -0.02 1.45 16 36 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.12 1.36 6.88 -2.38 -0.02 1.34 16 Total: -1.00 -73.10 318.55 7.04 -66.06 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 1.09 Total: 16.09 kcal Atomic # 6 Polarization: 24.57 SS G_CDS: 6.81 Total: 31.38 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -2.82 Total: -121.45 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -0.07 Total: -33.87 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal Total: -73.10 7.04 -66.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266950903.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.850 kcal (2) G-P(sol) polarization free energy of solvation -73.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds