Wall clock time and date at job start Mon Mar 30 2020 02:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 N 1.46506 * 109.47262 * 120.00338 * 2 1 3 5 5 C 1.34777 * 119.99873 * 275.00296 * 4 2 1 6 6 O 1.21476 * 119.99964 * 359.97438 * 5 4 2 7 7 C 1.48536 * 120.00165 * 179.97438 * 5 4 2 8 8 N 1.32460 * 119.18165 * 359.72334 * 7 5 4 9 9 C 1.32118 * 120.76694 * 179.76089 * 8 7 5 10 10 C 1.38809 * 119.16084 * 0.50695 * 9 8 7 11 11 C 1.38795 * 118.50598 * 359.74833 * 10 9 8 12 12 N 1.32115 * 119.16856 * 0.02562 * 11 10 9 13 13 C 1.53007 * 109.47211 * 240.00061 * 2 1 3 14 14 C 1.53948 * 113.74061 * 158.74256 * 13 2 1 15 15 N 1.47815 * 86.03137 * 222.08686 * 14 13 2 16 16 C 1.36938 * 134.45164 * 204.64387 * 15 14 13 17 17 H 1.08002 * 119.99908 * 179.87078 * 16 15 14 18 18 C 1.38815 * 120.00108 * 359.86853 * 16 15 14 19 19 N 1.31615 * 119.99747 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99994 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46993 * 59.99734 * 20 18 16 22 22 H 1.48493 * 109.47186 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47133 * 299.99942 * 20 18 16 24 24 C 1.47576 * 91.05506 * 24.54995 * 15 14 13 25 25 H 1.09001 * 109.47093 * 299.99896 * 1 2 3 26 26 H 1.09002 * 109.47121 * 59.99683 * 1 2 3 27 27 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 28 28 H 0.96995 * 120.00050 * 94.72411 * 4 2 1 29 29 H 1.07995 * 120.41846 * 180.25880 * 9 8 7 30 30 H 1.07992 * 120.74295 * 179.76956 * 10 9 8 31 31 H 1.08000 * 120.41648 * 180.02562 * 11 10 9 32 32 H 1.09000 * 112.94094 * 290.33299 * 13 2 1 33 33 H 1.09003 * 113.76413 * 336.34724 * 14 13 2 34 34 H 1.08989 * 113.76897 * 107.74751 * 14 13 2 35 35 H 0.97013 * 119.99839 * 179.97438 * 19 18 16 36 36 H 1.09000 * 113.76745 * 221.15526 * 24 15 14 37 37 H 1.08998 * 113.87420 * 89.76881 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1470 -0.0184 2.3572 6 8 1.8585 1.1603 2.4117 7 6 2.6416 -0.7187 3.5701 8 7 2.9463 -2.0056 3.4937 9 6 3.3934 -2.6582 4.5519 10 6 3.5319 -1.9809 5.7556 11 6 3.1983 -0.6343 5.8002 12 7 2.7615 -0.0425 4.7027 13 6 2.0400 -0.7213 -1.2493 14 6 3.4848 -0.3521 -1.6317 15 7 2.9978 -0.3176 -3.0268 16 6 3.5875 -0.4756 -4.2526 17 1 2.9927 -0.4035 -5.1513 18 6 4.9496 -0.7283 -4.3402 19 7 5.6744 -0.8155 -3.2451 20 14 5.7541 -0.9431 -6.0123 21 1 5.5661 0.2925 -6.8145 22 1 7.2056 -1.2007 -5.8339 23 1 5.1302 -2.0911 -6.7180 24 6 1.6214 -0.0471 -2.5684 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.2453 -1.6328 1.1535 29 1 3.6440 -3.7063 4.4823 30 1 3.8914 -2.4901 6.6374 31 1 3.2946 -0.0773 6.7204 32 1 1.8528 -1.7948 -1.2263 33 1 3.8047 0.6191 -1.2539 34 1 4.2070 -1.1447 -1.4367 35 1 6.6263 -0.9925 -3.3062 36 1 0.8587 -0.5969 -3.1200 37 1 1.3908 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970625327.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:09 Heat of formation + Delta-G solvation = 75.170960 kcal Electronic energy + Delta-G solvation = -20742.599644 eV Core-core repulsion = 17522.419278 eV Total energy + Delta-G solvation = -3220.180366 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.133 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.39207 -39.44814 -37.93323 -34.91780 -33.98958 -32.66245 -32.04808 -30.27223 -27.48424 -25.83762 -24.84176 -24.61251 -23.83776 -21.75108 -20.48024 -19.44254 -18.06151 -17.77005 -16.71710 -16.25996 -15.91120 -15.56503 -15.28471 -14.84181 -14.25406 -14.00026 -13.88584 -13.81080 -13.40854 -12.97855 -12.42136 -12.08824 -11.62743 -11.51409 -11.28750 -11.24917 -11.20093 -10.87146 -10.70367 -10.34470 -10.07651 -10.02231 -9.78028 -9.72178 -9.58150 -9.37242 -8.79480 -8.75620 -6.83445 -5.72577 -3.04810 0.22922 0.77492 2.64787 2.82673 3.42115 3.45994 3.47402 3.70631 3.72832 4.17364 4.23421 4.48565 4.60626 4.70887 4.96321 5.14486 5.31004 5.32625 5.37954 5.57001 5.69123 5.82609 5.92928 5.99105 6.06424 6.26616 6.38590 6.43844 6.60599 6.61046 6.68776 6.81956 7.28262 7.41042 7.46491 7.60456 7.80948 8.02166 8.27956 9.08451 9.74946 10.64591 11.44426 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.023776 B = 0.003907 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.352211 B = 7164.839532 C = 7929.593492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.150 3.850 3 H 0.090 0.910 4 N -0.692 5.692 5 C 0.581 3.419 6 O -0.509 6.509 7 C 0.289 3.711 8 N -0.492 5.492 9 C 0.147 3.853 10 C -0.214 4.214 11 C 0.144 3.856 12 N -0.470 5.470 13 C -0.146 4.146 14 C 0.170 3.830 15 N -0.613 5.613 16 C -0.224 4.224 17 H 0.079 0.921 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.131 3.869 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.411 0.589 29 H 0.176 0.824 30 H 0.153 0.847 31 H 0.175 0.825 32 H 0.090 0.910 33 H 0.026 0.974 34 H 0.072 0.928 35 H 0.253 0.747 36 H 0.045 0.955 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.775 -4.999 18.490 20.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.045 3.955 3 H 0.108 0.892 4 N -0.344 5.344 5 C 0.361 3.639 6 O -0.382 6.382 7 C 0.019 3.981 8 N -0.209 5.209 9 C -0.020 4.020 10 C -0.236 4.236 11 C -0.023 4.023 12 N -0.185 5.185 13 C -0.166 4.166 14 C 0.045 3.955 15 N -0.339 5.339 16 C -0.351 4.351 17 H 0.097 0.903 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.004 3.996 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.247 0.753 29 H 0.193 0.807 30 H 0.171 0.829 31 H 0.192 0.808 32 H 0.108 0.892 33 H 0.044 0.956 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.058 -3.690 17.428 19.162 hybrid contribution 1.113 -1.014 0.047 1.506 sum -5.945 -4.704 17.475 19.048 Atomic orbital electron populations 1.22143 0.95388 1.01944 1.02256 1.21219 0.93679 0.97669 0.82886 0.89166 1.45912 1.65174 1.14737 1.08570 1.17250 0.78927 0.85934 0.81756 1.90800 1.48851 1.14564 1.83958 1.23082 0.94353 0.87135 0.93512 1.68358 1.10942 1.09104 1.32449 1.23342 0.90383 1.00753 0.87506 1.23181 1.02157 0.97228 1.01011 1.23399 0.90090 0.92158 0.96618 1.68280 1.11756 1.39480 0.98955 1.23834 1.00964 0.99792 0.92033 1.22306 0.91407 0.98550 0.83253 1.45983 1.03296 1.82601 1.01996 1.18987 0.91451 1.41711 0.82980 0.90316 1.24776 0.96037 1.02401 0.97218 1.69815 1.06112 1.55125 1.25815 0.86210 0.78416 0.77977 0.83213 1.21215 1.21591 1.21096 1.22488 0.89661 0.96644 0.90778 0.92707 0.91146 0.92565 0.75337 0.80672 0.82907 0.80779 0.89200 0.95595 0.90978 0.93651 0.93703 0.94697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.31 37.16 0.35 -1.83 16 2 C 0.15 2.41 2.38 -67.92 -0.16 2.25 16 3 H 0.09 1.64 7.41 -51.93 -0.39 1.26 16 4 N -0.69 -10.56 5.06 -54.52 -0.28 -10.84 16 5 C 0.58 9.69 7.82 -12.01 -0.09 9.60 16 6 O -0.51 -10.03 16.53 5.39 0.09 -9.94 16 7 C 0.29 4.21 7.59 -157.08 -1.19 3.02 16 8 N -0.49 -6.00 9.58 -11.12 -0.11 -6.10 16 9 C 0.15 1.21 11.30 -17.22 -0.19 1.01 16 10 C -0.21 -1.40 10.18 -39.16 -0.40 -1.80 16 11 C 0.14 1.27 11.30 -17.22 -0.19 1.07 16 12 N -0.47 -6.46 10.13 -11.12 -0.11 -6.58 16 13 C -0.15 -2.68 3.47 -89.69 -0.31 -2.99 16 14 C 0.17 4.06 7.08 -2.84 -0.02 4.04 16 15 N -0.61 -15.94 3.70 -177.73 -0.66 -16.60 16 16 C -0.22 -6.38 10.70 -15.06 -0.16 -6.54 16 17 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 19 N -0.92 -27.77 11.39 55.49 0.63 -27.14 16 20 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.13 2.65 7.64 -2.97 -0.02 2.63 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.91 7.52 -51.93 -0.39 0.52 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.41 5.71 7.91 -40.82 -0.32 5.38 16 29 H 0.18 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.15 0.41 8.06 -52.49 -0.42 -0.01 16 31 H 0.18 0.89 8.06 -52.49 -0.42 0.46 16 32 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 33 H 0.03 0.66 7.99 -51.93 -0.41 0.24 16 34 H 0.07 1.89 7.16 -51.94 -0.37 1.52 16 35 H 0.25 7.42 8.31 -40.81 -0.34 7.08 16 36 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 320.52 15.07 4.83 4.83 Total: -1.00 -35.59 320.52 -7.94 -43.53 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -4.81 Total: 1.33 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: -2.50 Total: 10.13 kcal Atomic # 7 Polarization: -66.74 SS G_CDS: -0.52 Total: -67.26 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.59 -7.94 -43.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970625327.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.696 kcal (2) G-P(sol) polarization free energy of solvation -35.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds