Wall clock time and date at job start Mon Mar 30 2020 02:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 N 1.46506 * 109.47262 * 120.00338 * 2 1 3 5 5 C 1.34777 * 119.99873 * 275.00296 * 4 2 1 6 6 O 1.21476 * 119.99964 * 359.97438 * 5 4 2 7 7 C 1.48536 * 120.00165 * 179.97438 * 5 4 2 8 8 N 1.32460 * 119.18165 * 359.72334 * 7 5 4 9 9 C 1.32118 * 120.76694 * 179.76089 * 8 7 5 10 10 C 1.38809 * 119.16084 * 0.50695 * 9 8 7 11 11 C 1.38795 * 118.50598 * 359.74833 * 10 9 8 12 12 N 1.32115 * 119.16856 * 0.02562 * 11 10 9 13 13 C 1.53007 * 109.47211 * 240.00061 * 2 1 3 14 14 C 1.53948 * 113.74061 * 158.74256 * 13 2 1 15 15 N 1.47815 * 86.03137 * 222.08686 * 14 13 2 16 16 C 1.36938 * 134.45164 * 204.64387 * 15 14 13 17 17 H 1.08002 * 119.99908 * 179.87078 * 16 15 14 18 18 C 1.38815 * 120.00108 * 359.86853 * 16 15 14 19 19 N 1.31615 * 119.99747 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99994 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46993 * 59.99734 * 20 18 16 22 22 H 1.48493 * 109.47186 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47133 * 299.99942 * 20 18 16 24 24 C 1.47576 * 91.05506 * 24.54995 * 15 14 13 25 25 H 1.09001 * 109.47093 * 299.99896 * 1 2 3 26 26 H 1.09002 * 109.47121 * 59.99683 * 1 2 3 27 27 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 28 28 H 0.96995 * 120.00050 * 94.72411 * 4 2 1 29 29 H 1.07995 * 120.41846 * 180.25880 * 9 8 7 30 30 H 1.07992 * 120.74295 * 179.76956 * 10 9 8 31 31 H 1.08000 * 120.41648 * 180.02562 * 11 10 9 32 32 H 1.09000 * 112.94094 * 290.33299 * 13 2 1 33 33 H 1.09003 * 113.76413 * 336.34724 * 14 13 2 34 34 H 1.08989 * 113.76897 * 107.74751 * 14 13 2 35 35 H 0.97013 * 119.99839 * 179.97438 * 19 18 16 36 36 H 1.09000 * 113.76745 * 221.15526 * 24 15 14 37 37 H 1.08998 * 113.87420 * 89.76881 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1470 -0.0184 2.3572 6 8 1.8585 1.1603 2.4117 7 6 2.6416 -0.7187 3.5701 8 7 2.9463 -2.0056 3.4937 9 6 3.3934 -2.6582 4.5519 10 6 3.5319 -1.9809 5.7556 11 6 3.1983 -0.6343 5.8002 12 7 2.7615 -0.0425 4.7027 13 6 2.0400 -0.7213 -1.2493 14 6 3.4848 -0.3521 -1.6317 15 7 2.9978 -0.3176 -3.0268 16 6 3.5875 -0.4756 -4.2526 17 1 2.9927 -0.4035 -5.1513 18 6 4.9496 -0.7283 -4.3402 19 7 5.6744 -0.8155 -3.2451 20 14 5.7541 -0.9431 -6.0123 21 1 5.5661 0.2925 -6.8145 22 1 7.2056 -1.2007 -5.8339 23 1 5.1302 -2.0911 -6.7180 24 6 1.6214 -0.0471 -2.5684 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.2453 -1.6328 1.1535 29 1 3.6440 -3.7063 4.4823 30 1 3.8914 -2.4901 6.6374 31 1 3.2946 -0.0773 6.7204 32 1 1.8528 -1.7948 -1.2263 33 1 3.8047 0.6191 -1.2539 34 1 4.2070 -1.1447 -1.4367 35 1 6.6263 -0.9925 -3.3062 36 1 0.8587 -0.5969 -3.1200 37 1 1.3908 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970625327.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:08 Heat of formation + Delta-G solvation = 48.696936 kcal Electronic energy + Delta-G solvation = -20743.747644 eV Core-core repulsion = 17522.419278 eV Total energy + Delta-G solvation = -3221.328365 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.133 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.23988 -40.77216 -39.54204 -36.32402 -34.88388 -34.16803 -33.36128 -31.59797 -29.36010 -27.00091 -26.25827 -25.60059 -25.41970 -23.19135 -21.76847 -20.97732 -19.24282 -18.78763 -18.58925 -17.22062 -17.03609 -16.87487 -16.61888 -16.16635 -15.73462 -15.35862 -15.21833 -14.77742 -14.59938 -14.47868 -14.10318 -13.43233 -13.26090 -13.09010 -12.89596 -12.69066 -12.57469 -12.28912 -12.03740 -12.01215 -11.75144 -11.53667 -11.29523 -11.08996 -10.85162 -10.73430 -10.37496 -10.11436 -8.91952 -7.89702 -5.23729 -0.58838 0.10372 1.45204 1.49249 1.55249 1.57257 1.73815 2.48122 2.81973 2.88997 3.26862 3.32175 3.39612 3.67607 3.74281 3.90010 3.95853 4.12109 4.28581 4.38905 4.46566 4.58372 4.74698 4.79080 4.81848 4.85762 5.00542 5.06716 5.25718 5.30721 5.32525 5.41173 5.54331 5.65050 5.91700 5.93619 6.34036 6.88250 6.91579 7.07985 7.61471 8.57368 9.27152 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.023776 B = 0.003907 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.352211 B = 7164.839532 C = 7929.593492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.157 3.843 3 H 0.064 0.936 4 N -0.686 5.686 5 C 0.577 3.423 6 O -0.553 6.553 7 C 0.257 3.743 8 N -0.507 5.507 9 C 0.133 3.867 10 C -0.178 4.178 11 C 0.128 3.872 12 N -0.508 5.508 13 C -0.109 4.109 14 C 0.166 3.834 15 N -0.644 5.644 16 C -0.238 4.238 17 H 0.087 0.913 18 C -0.069 4.069 19 N -0.956 5.956 20 Si 0.981 3.019 21 H -0.279 1.279 22 H -0.295 1.295 23 H -0.272 1.272 24 C 0.132 3.868 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.417 0.583 29 H 0.214 0.786 30 H 0.204 0.796 31 H 0.209 0.791 32 H 0.106 0.894 33 H 0.002 0.998 34 H 0.041 0.959 35 H 0.248 0.752 36 H 0.068 0.932 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.532 -6.814 19.648 22.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.052 3.948 3 H 0.083 0.917 4 N -0.338 5.338 5 C 0.359 3.641 6 O -0.428 6.428 7 C -0.013 4.013 8 N -0.225 5.225 9 C -0.032 4.032 10 C -0.200 4.200 11 C -0.036 4.036 12 N -0.224 5.224 13 C -0.129 4.129 14 C 0.041 3.959 15 N -0.370 5.370 16 C -0.366 4.366 17 H 0.104 0.896 18 C -0.262 4.262 19 N -0.605 5.605 20 Si 0.808 3.192 21 H -0.205 1.205 22 H -0.221 1.221 23 H -0.198 1.198 24 C 0.007 3.993 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.255 0.745 29 H 0.231 0.769 30 H 0.221 0.779 31 H 0.226 0.774 32 H 0.124 0.876 33 H 0.020 0.980 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.086 0.914 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.853 -5.529 18.595 20.929 hybrid contribution 1.379 -0.497 -0.164 1.475 sum -6.474 -6.027 18.431 20.444 Atomic orbital electron populations 1.22059 0.92758 1.03333 1.02583 1.21010 0.95515 0.95938 0.82298 0.91746 1.45815 1.64887 1.14911 1.08144 1.17683 0.78079 0.85605 0.82704 1.90751 1.50879 1.16331 1.84877 1.22456 0.97524 0.88217 0.93057 1.68294 1.11542 1.08142 1.34472 1.24138 0.89518 1.02330 0.87209 1.23712 0.98367 0.96012 1.01879 1.24118 0.89485 0.93753 0.96284 1.68179 1.13181 1.41051 1.00023 1.23453 0.96299 1.00641 0.92496 1.22179 0.94054 0.96392 0.83311 1.46411 1.05889 1.82877 1.01858 1.19457 0.92027 1.40682 0.84432 0.89573 1.25665 0.96753 1.02874 1.00874 1.70027 1.05842 1.56661 1.27970 0.85124 0.76849 0.78284 0.78906 1.20520 1.22130 1.19767 1.22680 0.87667 0.97651 0.91285 0.93196 0.90010 0.90592 0.74502 0.76915 0.77902 0.77424 0.87596 0.98000 0.94072 0.94362 0.91354 0.93666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 9.31 71.98 0.67 -3.21 16 2 C 0.16 5.09 2.38 44.99 0.11 5.20 16 3 H 0.06 2.45 7.41 -2.39 -0.02 2.44 16 4 N -0.69 -21.42 5.06 -444.72 -2.25 -23.67 16 5 C 0.58 20.11 7.82 86.99 0.68 20.79 16 6 O -0.55 -23.00 16.53 -3.64 -0.06 -23.06 16 7 C 0.26 7.62 7.59 137.68 1.05 8.66 16 8 N -0.51 -11.96 9.58 -189.09 -1.81 -13.77 16 9 C 0.13 1.81 11.30 84.79 0.96 2.77 16 10 C -0.18 -1.64 10.18 22.54 0.23 -1.41 16 11 C 0.13 1.98 11.30 84.78 0.96 2.94 16 12 N -0.51 -13.99 10.13 -189.10 -1.92 -15.90 16 13 C -0.11 -3.97 3.47 -10.13 -0.04 -4.01 16 14 C 0.17 8.24 7.08 86.44 0.61 8.85 16 15 N -0.64 -33.89 3.70 -716.20 -2.65 -36.54 16 16 C -0.24 -13.65 10.70 84.03 0.90 -12.75 16 17 H 0.09 4.67 7.83 -2.91 -0.02 4.65 16 18 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 19 N -0.96 -59.44 11.39 21.65 0.25 -59.19 16 20 Si 0.98 46.53 29.55 68.60 2.03 48.56 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 22 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 24 C 0.13 5.23 7.64 86.49 0.66 5.89 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.08 1.94 7.52 -2.39 -0.02 1.93 16 27 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.42 11.70 7.91 -92.71 -0.73 10.97 16 29 H 0.21 1.09 8.06 -2.91 -0.02 1.06 16 30 H 0.20 -0.19 8.06 -2.91 -0.02 -0.22 16 31 H 0.21 1.49 8.06 -2.91 -0.02 1.46 16 32 H 0.11 3.56 8.14 -2.39 -0.02 3.55 16 33 H 0.00 0.12 7.99 -2.39 -0.02 0.10 16 34 H 0.04 2.27 7.16 -2.39 -0.02 2.25 16 35 H 0.25 14.97 8.31 -92.70 -0.77 14.20 16 36 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 Total: -1.00 -82.15 320.52 1.19 -80.96 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.35 Total: 12.47 kcal Atomic # 6 Polarization: 22.90 SS G_CDS: 7.25 Total: 30.15 kcal Atomic # 7 Polarization: -140.70 SS G_CDS: -8.38 Total: -149.08 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.06 Total: -23.06 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -82.15 1.19 -80.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970625327.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.659 kcal (2) G-P(sol) polarization free energy of solvation -82.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds