Wall clock time and date at job start Mon Mar 30 2020 02:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47202 * 2 1 4 4 C 1.53002 * 109.46816 * 239.99976 * 2 1 3 5 5 N 1.46498 * 109.46713 * 185.00266 * 4 2 1 6 6 C 1.36944 * 119.99896 * 180.02562 * 5 4 2 7 7 H 1.07997 * 119.99582 * 0.02562 * 6 5 4 8 8 C 1.38803 * 119.99762 * 179.97438 * 6 5 4 9 9 N 1.31626 * 119.99597 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00359 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47354 * 89.99981 * 10 8 6 12 12 H 1.48502 * 109.46982 * 209.99631 * 10 8 6 13 13 H 1.48493 * 109.47081 * 329.99547 * 10 8 6 14 14 N 1.46499 * 109.46868 * 120.00366 * 2 1 3 15 15 C 1.46499 * 120.00225 * 59.99572 * 14 2 1 16 16 C 1.34780 * 119.99546 * 240.00135 * 14 2 1 17 17 O 1.21279 * 120.00031 * 359.97438 * 16 14 2 18 18 C 1.50699 * 119.99563 * 180.02562 * 16 14 2 19 19 C 1.53778 * 113.61582 * 279.12916 * 18 16 14 20 20 C 1.53949 * 87.02410 * 220.05228 * 19 18 16 21 21 F 1.39898 * 113.53558 * 270.81260 * 20 19 18 22 22 F 1.39894 * 113.66874 * 139.93374 * 20 19 18 23 23 C 1.53780 * 87.10877 * 25.36268 * 20 19 18 24 24 H 1.09002 * 109.46830 * 59.99794 * 1 2 3 25 25 H 1.08993 * 109.47519 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47040 * 300.00243 * 1 2 3 27 27 H 1.08997 * 109.47059 * 305.00390 * 4 2 1 28 28 H 1.09000 * 109.47062 * 65.00459 * 4 2 1 29 29 H 0.97001 * 120.00363 * 359.97438 * 5 4 2 30 30 H 0.97002 * 119.99571 * 180.02562 * 9 8 6 31 31 H 1.09002 * 109.47391 * 270.00005 * 15 14 2 32 32 H 1.09001 * 109.46813 * 150.00061 * 15 14 2 33 33 H 1.09004 * 109.47041 * 30.00189 * 15 14 2 34 34 H 1.08996 * 112.85149 * 50.33303 * 18 16 14 35 35 H 1.09005 * 113.61207 * 334.57449 * 19 18 16 36 36 H 1.09001 * 113.61218 * 105.47019 * 19 18 16 37 37 H 1.09001 * 113.61155 * 220.09111 * 23 20 19 38 38 H 1.08994 * 113.69139 * 89.20357 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1905 6 6 4.1839 -1.4380 -2.2072 7 1 3.6468 -1.8424 -3.0525 8 6 5.5672 -1.5372 -2.1518 9 7 6.2245 -2.1255 -3.1288 10 14 6.4961 -0.8371 -0.6902 11 1 6.6277 -1.8802 0.3585 12 1 7.8469 -0.3997 -1.1255 13 1 5.7524 0.3252 -0.1417 14 7 2.0183 -0.6907 1.1961 15 6 1.6643 -2.0932 1.4280 16 6 2.7932 -0.0357 2.0833 17 8 3.0865 1.1253 1.8912 18 6 3.2959 -0.7463 3.3135 19 6 2.2602 -0.8221 4.4477 20 6 3.4212 -0.5392 5.4183 21 9 4.0679 -1.6954 5.8677 22 9 3.0842 0.3350 6.4572 23 6 4.1345 0.1479 4.2419 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6053 -1.7198 -1.2952 28 1 1.7517 -0.1583 -2.1370 29 1 3.9824 -0.4622 -0.4319 30 1 7.1912 -2.1951 -3.0899 31 1 0.7375 -2.1444 1.9993 32 1 2.4628 -2.5819 1.9863 33 1 1.5294 -2.5969 0.4707 34 1 3.7663 -1.7031 3.0870 35 1 1.5160 -0.0263 4.4133 36 1 1.8185 -1.8110 4.5702 37 1 5.2038 -0.0591 4.1987 38 1 3.9048 1.2094 4.1502 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714576991.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:20 Heat of formation + Delta-G solvation = -94.684259 kcal Electronic energy + Delta-G solvation = -22629.498115 eV Core-core repulsion = 18951.263088 eV Total energy + Delta-G solvation = -3678.235027 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.139 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.02269 -47.35525 -40.40479 -37.62573 -36.23721 -34.18894 -32.01958 -30.57561 -26.91027 -26.53872 -26.37634 -25.86175 -22.41519 -21.63517 -20.24015 -19.03207 -18.03553 -17.59663 -17.05302 -16.84131 -16.40441 -15.82611 -15.33504 -14.68280 -14.39447 -14.22470 -14.03046 -13.87421 -13.62558 -13.10140 -12.92952 -12.85134 -12.72682 -12.46455 -12.38519 -12.13144 -12.04755 -11.86229 -11.62337 -11.54401 -10.98179 -10.83959 -10.70524 -10.61385 -10.14113 -9.68475 -9.61580 -8.92402 -8.51774 -7.25055 -5.79152 -3.14239 2.57770 2.98722 3.21363 3.34939 3.44715 3.46468 3.52826 3.98860 4.07777 4.15080 4.58585 4.67705 4.99499 5.04393 5.14356 5.18126 5.21981 5.26065 5.28641 5.42290 5.50055 5.52228 5.54648 5.76306 5.77460 5.85260 5.92364 5.98581 6.15630 6.34972 6.55380 6.76741 7.45942 7.96551 8.21987 8.40173 9.19503 9.92335 10.12356 11.39105 Molecular weight = 276.14amu Principal moments of inertia in cm(-1) A = 0.017318 B = 0.006306 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.410775 B = 4439.498576 C = 5469.224958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.120 3.880 3 H 0.101 0.899 4 C 0.148 3.852 5 N -0.752 5.752 6 C -0.244 4.244 7 H 0.090 0.910 8 C 0.007 3.993 9 N -0.933 5.933 10 Si 0.874 3.126 11 H -0.284 1.284 12 H -0.289 1.289 13 H -0.272 1.272 14 N -0.594 5.594 15 C 0.077 3.923 16 C 0.527 3.473 17 O -0.536 6.536 18 C -0.135 4.135 19 C -0.145 4.145 20 C 0.255 3.745 21 F -0.178 7.178 22 F -0.189 7.189 23 C -0.144 4.144 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.030 0.970 28 H 0.038 0.962 29 H 0.363 0.637 30 H 0.259 0.741 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.129 0.871 35 H 0.116 0.884 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.896 1.318 16.282 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.017 3.983 3 H 0.119 0.881 4 C 0.020 3.980 5 N -0.398 5.398 6 C -0.374 4.374 7 H 0.108 0.892 8 C -0.188 4.188 9 N -0.581 5.581 10 Si 0.704 3.296 11 H -0.211 1.211 12 H -0.216 1.216 13 H -0.198 1.198 14 N -0.327 5.327 15 C -0.066 4.066 16 C 0.314 3.686 17 O -0.413 6.413 18 C -0.156 4.156 19 C -0.183 4.183 20 C 0.219 3.781 21 F -0.159 7.159 22 F -0.170 7.170 23 C -0.182 4.182 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.196 0.804 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.146 0.854 35 H 0.134 0.866 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.693 1.802 15.983 19.886 hybrid contribution 0.923 0.172 1.076 1.428 sum -10.770 1.974 17.060 20.271 Atomic orbital electron populations 1.22034 0.94656 1.02293 1.02219 1.21505 0.93795 0.98514 0.84448 0.88101 1.20986 0.85771 0.97426 0.93837 1.42651 1.01239 1.71191 1.24700 1.19041 0.89883 1.29221 0.99234 0.89203 1.24629 0.96151 1.00525 0.97535 1.69700 1.07333 1.48557 1.32525 0.86670 0.80001 0.79415 0.83479 1.21104 1.21568 1.19826 1.47735 1.50185 1.12470 1.22279 1.21807 1.00077 0.81593 1.03166 1.19974 0.78203 0.86740 0.83725 1.90703 1.57367 1.16893 1.76299 1.22582 0.98360 1.01658 0.93015 1.24020 0.96702 1.05907 0.91658 1.22026 0.95152 0.78443 0.82495 1.93030 1.82541 1.49477 1.90810 1.93013 1.92737 1.68774 1.62441 1.24011 1.01824 1.02474 0.89927 0.91185 0.92186 0.92617 0.95215 0.94468 0.80436 0.93056 0.92838 0.91212 0.89847 0.85363 0.86609 0.87944 0.88200 0.85568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.19 37.16 0.34 -1.37 16 2 C 0.12 1.83 2.80 -67.93 -0.19 1.64 16 3 H 0.10 1.76 6.90 -51.93 -0.36 1.41 16 4 C 0.15 2.74 5.50 -4.04 -0.02 2.72 16 5 N -0.75 -17.94 5.24 -59.91 -0.31 -18.25 16 6 C -0.24 -6.91 10.47 -15.06 -0.16 -7.07 16 7 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 8 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 9 N -0.93 -29.46 13.97 55.49 0.78 -28.68 16 10 Si 0.87 22.71 27.74 -169.99 -4.71 18.00 16 11 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.61 7.11 56.52 0.40 -7.20 16 13 H -0.27 -7.03 6.52 56.52 0.37 -6.66 16 14 N -0.59 -8.51 2.24 -173.93 -0.39 -8.90 16 15 C 0.08 0.85 9.25 59.85 0.55 1.40 16 16 C 0.53 8.12 6.90 -10.98 -0.08 8.04 16 17 O -0.54 -10.16 15.24 5.56 0.08 -10.08 16 18 C -0.13 -1.61 2.90 -90.96 -0.26 -1.87 16 19 C -0.14 -1.32 7.34 -25.83 -0.19 -1.51 16 20 C 0.26 2.77 3.28 -25.83 -0.08 2.69 16 21 F -0.18 -2.10 17.38 2.25 0.04 -2.06 16 22 F -0.19 -2.25 17.41 2.25 0.04 -2.21 16 23 C -0.14 -1.70 7.18 -25.92 -0.19 -1.88 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 26 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 27 H 0.03 0.53 6.88 -51.93 -0.36 0.18 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.36 8.85 4.93 -40.82 -0.20 8.65 16 30 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.72 6.25 -51.93 -0.32 0.39 16 33 H 0.08 1.01 6.53 -51.93 -0.34 0.67 16 34 H 0.13 1.44 7.02 -51.93 -0.36 1.07 16 35 H 0.12 1.00 8.09 -51.93 -0.42 0.58 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.13 1.55 7.45 -51.93 -0.39 1.16 16 LS Contribution 317.22 15.07 4.78 4.78 Total: -1.00 -33.94 317.22 -5.35 -39.29 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.28 Total: 5.19 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -0.37 Total: 2.93 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.07 Total: -55.84 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.08 Total: -4.27 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.71 Total: 18.00 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.94 -5.35 -39.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714576991.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.398 kcal (2) G-P(sol) polarization free energy of solvation -33.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds