Wall clock time and date at job start Mon Mar 30 2020 02:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47202 * 2 1 4 4 C 1.53002 * 109.46816 * 239.99976 * 2 1 3 5 5 N 1.46498 * 109.46713 * 185.00266 * 4 2 1 6 6 C 1.36944 * 119.99896 * 180.02562 * 5 4 2 7 7 H 1.07997 * 119.99582 * 0.02562 * 6 5 4 8 8 C 1.38803 * 119.99762 * 179.97438 * 6 5 4 9 9 N 1.31626 * 119.99597 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00359 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47354 * 89.99981 * 10 8 6 12 12 H 1.48502 * 109.46982 * 209.99631 * 10 8 6 13 13 H 1.48493 * 109.47081 * 329.99547 * 10 8 6 14 14 N 1.46499 * 109.46868 * 120.00366 * 2 1 3 15 15 C 1.46499 * 120.00225 * 59.99572 * 14 2 1 16 16 C 1.34780 * 119.99546 * 240.00135 * 14 2 1 17 17 O 1.21279 * 120.00031 * 359.97438 * 16 14 2 18 18 C 1.50699 * 119.99563 * 180.02562 * 16 14 2 19 19 C 1.53778 * 113.61582 * 279.12916 * 18 16 14 20 20 C 1.53949 * 87.02410 * 220.05228 * 19 18 16 21 21 F 1.39898 * 113.53558 * 270.81260 * 20 19 18 22 22 F 1.39894 * 113.66874 * 139.93374 * 20 19 18 23 23 C 1.53780 * 87.10877 * 25.36268 * 20 19 18 24 24 H 1.09002 * 109.46830 * 59.99794 * 1 2 3 25 25 H 1.08993 * 109.47519 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47040 * 300.00243 * 1 2 3 27 27 H 1.08997 * 109.47059 * 305.00390 * 4 2 1 28 28 H 1.09000 * 109.47062 * 65.00459 * 4 2 1 29 29 H 0.97001 * 120.00363 * 359.97438 * 5 4 2 30 30 H 0.97002 * 119.99571 * 180.02562 * 9 8 6 31 31 H 1.09002 * 109.47391 * 270.00005 * 15 14 2 32 32 H 1.09001 * 109.46813 * 150.00061 * 15 14 2 33 33 H 1.09004 * 109.47041 * 30.00189 * 15 14 2 34 34 H 1.08996 * 112.85149 * 50.33303 * 18 16 14 35 35 H 1.09005 * 113.61207 * 334.57449 * 19 18 16 36 36 H 1.09001 * 113.61218 * 105.47019 * 19 18 16 37 37 H 1.09001 * 113.61155 * 220.09111 * 23 20 19 38 38 H 1.08994 * 113.69139 * 89.20357 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1905 6 6 4.1839 -1.4380 -2.2072 7 1 3.6468 -1.8424 -3.0525 8 6 5.5672 -1.5372 -2.1518 9 7 6.2245 -2.1255 -3.1288 10 14 6.4961 -0.8371 -0.6902 11 1 6.6277 -1.8802 0.3585 12 1 7.8469 -0.3997 -1.1255 13 1 5.7524 0.3252 -0.1417 14 7 2.0183 -0.6907 1.1961 15 6 1.6643 -2.0932 1.4280 16 6 2.7932 -0.0357 2.0833 17 8 3.0865 1.1253 1.8912 18 6 3.2959 -0.7463 3.3135 19 6 2.2602 -0.8221 4.4477 20 6 3.4212 -0.5392 5.4183 21 9 4.0679 -1.6954 5.8677 22 9 3.0842 0.3350 6.4572 23 6 4.1345 0.1479 4.2419 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6053 -1.7198 -1.2952 28 1 1.7517 -0.1583 -2.1370 29 1 3.9824 -0.4622 -0.4319 30 1 7.1912 -2.1951 -3.0899 31 1 0.7375 -2.1444 1.9993 32 1 2.4628 -2.5819 1.9863 33 1 1.5294 -2.5969 0.4707 34 1 3.7663 -1.7031 3.0870 35 1 1.5160 -0.0263 4.4133 36 1 1.8185 -1.8110 4.5702 37 1 5.2038 -0.0591 4.1987 38 1 3.9048 1.2094 4.1502 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714576991.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:20 Heat of formation + Delta-G solvation = -116.961032 kcal Electronic energy + Delta-G solvation = -22630.464108 eV Core-core repulsion = 18951.263088 eV Total energy + Delta-G solvation = -3679.201020 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.139 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.89552 -48.23576 -41.50440 -38.69786 -37.46241 -35.95469 -33.69443 -32.22561 -27.86948 -27.64179 -27.33121 -27.19967 -24.13383 -22.90927 -21.33377 -20.17938 -19.55681 -19.01905 -18.07477 -17.72416 -17.30937 -16.94247 -16.64736 -16.53866 -15.69097 -15.33258 -15.11368 -15.01238 -14.80568 -14.51588 -14.24553 -14.08107 -13.77960 -13.70506 -13.62779 -13.28376 -13.12561 -12.94924 -12.86793 -12.56568 -12.45910 -12.35448 -12.26515 -11.89067 -11.77951 -11.51727 -11.05503 -10.83623 -9.63919 -9.32645 -8.07789 -5.39031 1.27163 1.33378 1.39543 1.46343 1.94288 2.37688 2.40980 2.68708 3.12160 3.18676 3.24139 3.28575 3.56471 3.79505 4.02835 4.13316 4.26307 4.34232 4.36141 4.39290 4.41109 4.58390 4.64850 4.76095 4.80985 4.84470 4.92198 5.01026 5.06389 5.14654 5.31544 5.58354 5.72799 6.17002 6.37344 7.03224 7.09377 7.80923 7.98074 9.13768 Molecular weight = 276.14amu Principal moments of inertia in cm(-1) A = 0.017318 B = 0.006306 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.410775 B = 4439.498576 C = 5469.224958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.126 3.874 3 H 0.074 0.926 4 C 0.143 3.857 5 N -0.756 5.756 6 C -0.227 4.227 7 H 0.065 0.935 8 C -0.055 4.055 9 N -0.979 5.979 10 Si 0.939 3.061 11 H -0.268 1.268 12 H -0.295 1.295 13 H -0.274 1.274 14 N -0.596 5.596 15 C 0.069 3.931 16 C 0.518 3.482 17 O -0.581 6.581 18 C -0.136 4.136 19 C -0.123 4.123 20 C 0.256 3.744 21 F -0.182 7.182 22 F -0.196 7.196 23 C -0.153 4.153 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.035 0.965 29 H 0.361 0.639 30 H 0.258 0.742 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.139 0.861 35 H 0.123 0.877 36 H 0.133 0.867 37 H 0.098 0.902 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.653 0.673 18.299 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.022 3.978 3 H 0.092 0.908 4 C 0.016 3.984 5 N -0.401 5.401 6 C -0.358 4.358 7 H 0.083 0.917 8 C -0.247 4.247 9 N -0.630 5.630 10 Si 0.767 3.233 11 H -0.194 1.194 12 H -0.221 1.221 13 H -0.199 1.199 14 N -0.327 5.327 15 C -0.073 4.073 16 C 0.307 3.693 17 O -0.462 6.462 18 C -0.157 4.157 19 C -0.161 4.161 20 C 0.220 3.780 21 F -0.163 7.163 22 F -0.176 7.176 23 C -0.191 4.191 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.193 0.807 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.156 0.844 35 H 0.142 0.858 36 H 0.151 0.849 37 H 0.117 0.883 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.512 1.133 18.025 22.555 hybrid contribution 1.393 0.379 0.375 1.492 sum -12.118 1.513 18.400 22.084 Atomic orbital electron populations 1.21950 0.90996 1.03817 1.03227 1.21341 0.96435 0.96540 0.83438 0.90823 1.21233 0.82778 0.98606 0.95784 1.42711 1.03428 1.70588 1.23414 1.19067 0.90007 1.27606 0.99118 0.91712 1.25305 0.97231 1.01895 1.00251 1.69849 1.07455 1.50898 1.34771 0.85647 0.78126 0.78871 0.80646 1.19383 1.22145 1.19941 1.47891 1.49654 1.13697 1.21461 1.22079 1.02347 0.79450 1.03414 1.20567 0.77674 0.86416 0.84654 1.90682 1.59026 1.18980 1.77499 1.22617 0.99591 1.01438 0.92060 1.23987 0.95618 1.07955 0.88575 1.22042 0.95827 0.78041 0.82088 1.93023 1.82823 1.49599 1.90868 1.93001 1.92769 1.69105 1.62768 1.24049 1.02067 1.02172 0.90836 0.90420 0.90335 0.91439 0.93677 0.94751 0.80674 0.93320 0.88958 0.90211 0.90876 0.84351 0.85834 0.84860 0.88297 0.86556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.19 71.98 0.66 -2.05 16 2 C 0.13 3.63 2.80 44.99 0.13 3.76 16 3 H 0.07 2.55 6.90 -2.39 -0.02 2.54 16 4 C 0.14 5.12 5.50 86.38 0.48 5.60 16 5 N -0.76 -35.64 5.24 -343.46 -1.80 -37.44 16 6 C -0.23 -12.93 10.47 84.03 0.88 -12.05 16 7 H 0.06 3.96 8.06 -2.91 -0.02 3.94 16 8 C -0.05 -3.27 5.50 84.86 0.47 -2.81 16 9 N -0.98 -62.87 13.97 21.65 0.30 -62.56 16 10 Si 0.94 47.41 27.74 68.60 1.90 49.32 16 11 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.29 -15.05 7.11 99.48 0.71 -14.34 16 13 H -0.27 -13.71 6.52 99.48 0.65 -13.06 16 14 N -0.60 -15.62 2.24 -822.58 -1.85 -17.47 16 15 C 0.07 1.27 9.25 127.77 1.18 2.45 16 16 C 0.52 15.10 6.90 87.66 0.61 15.71 16 17 O -0.58 -21.90 15.24 -3.02 -0.05 -21.94 16 18 C -0.14 -2.91 2.90 -11.02 -0.03 -2.94 16 19 C -0.12 -1.81 7.34 31.18 0.23 -1.58 16 20 C 0.26 4.98 3.28 31.18 0.10 5.08 16 21 F -0.18 -3.86 17.38 44.97 0.78 -3.08 16 22 F -0.20 -4.30 17.41 44.97 0.78 -3.51 16 23 C -0.15 -3.40 7.18 31.12 0.22 -3.18 16 24 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.08 1.24 7.67 -2.39 -0.02 1.22 16 26 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 27 H 0.05 1.52 6.88 -2.39 -0.02 1.50 16 28 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.36 17.32 4.93 -92.71 -0.46 16.86 16 30 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 1.33 6.25 -2.39 -0.01 1.32 16 33 H 0.07 1.53 6.53 -2.38 -0.02 1.51 16 34 H 0.14 2.68 7.02 -2.39 -0.02 2.67 16 35 H 0.12 1.69 8.09 -2.38 -0.02 1.67 16 36 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.12 2.83 7.45 -2.39 -0.02 2.81 16 Total: -1.00 -74.51 317.22 5.56 -68.95 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.56 Total: 19.75 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 4.92 Total: 7.99 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -3.34 Total: -117.48 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.05 Total: -21.94 kcal Atomic # 9 Polarization: -8.15 SS G_CDS: 1.56 Total: -6.59 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.90 Total: 49.32 kcal Total: -74.51 5.56 -68.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714576991.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.011 kcal (2) G-P(sol) polarization free energy of solvation -74.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds