Wall clock time and date at job start Mon Mar 30 2020 02:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47856 * 2 1 4 4 N 1.46500 * 109.47137 * 120.00223 * 2 1 3 5 5 C 1.34778 * 120.00385 * 274.99807 * 4 2 1 6 6 O 1.21277 * 119.99349 * 359.97438 * 5 4 2 7 7 C 1.50692 * 120.00274 * 179.97438 * 5 4 2 8 8 C 1.53001 * 109.46922 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.46987 * 180.02562 * 8 7 5 10 10 F 1.39893 * 109.47628 * 300.00146 * 8 7 5 11 11 F 1.39900 * 109.46971 * 60.00255 * 8 7 5 12 12 C 1.53008 * 109.47293 * 240.00232 * 2 1 3 13 13 C 1.53497 * 114.20384 * 59.99774 * 12 2 1 14 14 N 1.47070 * 87.98301 * 87.52522 * 13 12 2 15 15 C 1.36932 * 136.05620 * 207.08686 * 14 13 12 16 16 H 1.08006 * 120.00205 * 7.81892 * 15 14 13 17 17 C 1.38809 * 120.00281 * 187.82655 * 15 14 13 18 18 N 1.31616 * 120.00068 * 195.17204 * 17 15 14 19 19 Si 1.86802 * 119.99918 * 15.16359 * 17 15 14 20 20 H 1.48504 * 109.47042 * 270.00682 * 19 17 15 21 21 H 1.48499 * 109.47021 * 30.00157 * 19 17 15 22 22 H 1.48492 * 109.47106 * 150.00508 * 19 17 15 23 23 C 1.47068 * 87.88415 * 27.33811 * 14 13 12 24 24 H 1.08999 * 109.46751 * 59.99882 * 1 2 3 25 25 H 1.08995 * 109.47159 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46758 * 300.00111 * 1 2 3 27 27 H 0.97001 * 120.00124 * 94.99855 * 4 2 1 28 28 H 1.08994 * 109.47321 * 299.99864 * 7 5 4 29 29 H 1.09002 * 109.47170 * 60.00362 * 7 5 4 30 30 H 1.08994 * 109.46939 * 60.00271 * 9 8 7 31 31 H 1.09000 * 109.47015 * 180.02562 * 9 8 7 32 32 H 1.09007 * 109.46949 * 299.99991 * 9 8 7 33 33 H 1.09008 * 113.41028 * 286.80480 * 12 2 1 34 34 H 1.08996 * 113.46841 * 332.74047 * 13 12 2 35 35 H 1.08998 * 113.51535 * 202.31022 * 13 12 2 36 36 H 0.96995 * 120.00585 * 354.89801 * 18 17 15 37 37 H 1.09005 * 113.46482 * 87.44223 * 23 14 13 38 38 H 1.09000 * 113.46807 * 217.87726 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3572 6 8 1.8591 1.1584 2.4115 7 6 2.6489 -0.7290 3.5877 8 6 2.7011 0.2543 4.7587 9 6 3.2112 -0.4670 6.0079 10 9 3.5650 1.3087 4.4442 11 9 1.4190 0.7586 5.0017 12 6 2.0400 -0.7212 -1.2493 13 6 1.5898 -0.0845 -2.5714 14 7 2.7723 0.7865 -2.4946 15 6 3.1105 2.0324 -2.9511 16 1 2.3627 2.6593 -3.4140 17 6 4.4144 2.4898 -2.8189 18 7 4.6820 3.7691 -2.9738 19 14 5.7894 1.2895 -2.4210 20 1 5.9413 1.1815 -0.9477 21 1 5.4600 -0.0447 -2.9837 22 1 7.0598 1.7775 -3.0152 23 6 3.4340 -0.2722 -1.7172 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 2.2490 -1.6318 1.1526 28 1 1.9760 -1.5507 3.8325 29 1 3.6480 -1.1215 3.3985 30 1 4.2101 -0.8596 5.8183 31 1 3.2479 0.2334 6.8423 32 1 2.5383 -1.2888 6.2532 33 1 1.9118 -1.8029 -1.2077 34 1 0.6466 0.4561 -2.4938 35 1 1.6123 -0.7734 -3.4158 36 1 3.9826 4.3806 -3.2527 37 1 3.9432 -1.0112 -2.3359 38 1 4.0621 0.1088 -0.9118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734119993.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:20 Heat of formation + Delta-G solvation = -113.314118 kcal Electronic energy + Delta-G solvation = -22400.218168 eV Core-core repulsion = 18721.175290 eV Total energy + Delta-G solvation = -3679.042878 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.139 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.84425 -47.87754 -41.20990 -39.98171 -36.20927 -34.56225 -34.20638 -31.95302 -29.73528 -29.16452 -26.90550 -25.36026 -23.65911 -22.67384 -21.52216 -20.64529 -19.46726 -18.56962 -18.35226 -17.92912 -17.12228 -16.99024 -16.63163 -16.20363 -15.90228 -15.51496 -15.25712 -14.79355 -14.66324 -14.55569 -14.23896 -13.83011 -13.72401 -13.43689 -13.34962 -13.20436 -13.03150 -12.98833 -12.79386 -12.61222 -12.42084 -11.96057 -11.89485 -11.69410 -11.39094 -11.10476 -10.89653 -10.82667 -10.10749 -9.21328 -8.63331 -5.45305 1.33676 1.46998 1.60566 1.61897 2.05201 2.53867 2.85160 3.07662 3.16545 3.19226 3.40293 3.52557 3.58144 3.79487 4.06433 4.33621 4.37881 4.42464 4.44295 4.56544 4.63163 4.67893 4.68948 4.73935 4.78560 4.85945 4.87525 5.06780 5.11602 5.20850 5.28039 5.39495 5.61293 5.95716 6.56566 6.70065 7.30715 7.35458 8.29937 8.88693 Molecular weight = 276.14amu Principal moments of inertia in cm(-1) A = 0.019619 B = 0.005397 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.825900 B = 5186.721105 C = 5853.463145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.168 3.832 3 H 0.035 0.965 4 N -0.703 5.703 5 C 0.496 3.504 6 O -0.585 6.585 7 C -0.177 4.177 8 C 0.279 3.721 9 C -0.183 4.183 10 F -0.224 7.224 11 F -0.218 7.218 12 C -0.104 4.104 13 C 0.121 3.879 14 N -0.661 5.661 15 C -0.288 4.288 16 H 0.043 0.957 17 C -0.092 4.092 18 N -0.974 5.974 19 Si 1.105 2.895 20 H -0.289 1.289 21 H -0.240 1.240 22 H -0.303 1.303 23 C 0.095 3.905 24 H 0.059 0.941 25 H 0.093 0.907 26 H 0.037 0.963 27 H 0.422 0.578 28 H 0.169 0.831 29 H 0.157 0.843 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.141 0.859 34 H 0.046 0.954 35 H 0.067 0.933 36 H 0.244 0.756 37 H 0.070 0.930 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.281 -22.463 16.666 28.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.063 3.937 3 H 0.053 0.947 4 N -0.357 5.357 5 C 0.283 3.717 6 O -0.465 6.465 7 C -0.216 4.216 8 C 0.243 3.757 9 C -0.240 4.240 10 F -0.205 7.205 11 F -0.199 7.199 12 C -0.123 4.123 13 C -0.005 4.005 14 N -0.390 5.390 15 C -0.416 4.416 16 H 0.061 0.939 17 C -0.283 4.283 18 N -0.620 5.620 19 Si 0.930 3.070 20 H -0.217 1.217 21 H -0.164 1.164 22 H -0.231 1.231 23 C -0.029 4.029 24 H 0.078 0.922 25 H 0.112 0.888 26 H 0.056 0.944 27 H 0.261 0.739 28 H 0.187 0.813 29 H 0.175 0.825 30 H 0.131 0.869 31 H 0.097 0.903 32 H 0.138 0.862 33 H 0.159 0.841 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.088 0.912 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.873 -21.492 16.922 27.627 hybrid contribution -1.613 1.395 -1.002 2.356 sum -5.486 -20.097 15.921 26.219 Atomic orbital electron populations 1.22001 0.93772 1.03510 1.01192 1.20351 0.94639 0.95380 0.83376 0.94704 1.45789 1.66809 1.14730 1.08328 1.21181 0.77384 0.87035 0.86117 1.90810 1.51393 1.18579 1.85699 1.22987 1.09179 0.99855 0.89625 1.21576 0.73253 0.82744 0.98160 1.22811 1.05541 1.02267 0.93358 1.93005 1.70605 1.62244 1.94669 1.92985 1.41876 1.89521 1.95518 1.22993 0.95272 1.01150 0.92916 1.22704 0.90971 0.91404 0.95376 1.46304 1.16354 1.12735 1.63588 1.19949 0.95247 0.89832 1.36541 0.93902 1.27159 1.00467 0.99879 1.00783 1.71003 1.36480 1.02619 1.51892 0.83314 0.72809 0.74657 0.76253 1.21655 1.16395 1.23100 1.23027 0.96175 0.90056 0.93664 0.92235 0.88799 0.94396 0.73942 0.81303 0.82505 0.86912 0.90337 0.86245 0.84097 0.93570 0.91528 0.94735 0.91214 0.94996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.29 71.98 0.67 -3.31 16 2 C 0.17 5.27 2.43 44.99 0.11 5.38 16 3 H 0.03 1.60 7.36 -2.39 -0.02 1.58 16 4 N -0.70 -16.42 5.08 -442.54 -2.25 -18.66 16 5 C 0.50 14.13 7.56 87.65 0.66 14.79 16 6 O -0.59 -25.00 14.50 -3.02 -0.04 -25.04 16 7 C -0.18 -2.72 5.30 29.85 0.16 -2.56 16 8 C 0.28 6.10 1.85 30.60 0.06 6.15 16 9 C -0.18 -1.86 9.38 71.98 0.68 -1.18 16 10 F -0.22 -7.24 16.14 44.97 0.73 -6.52 16 11 F -0.22 -6.31 16.14 44.97 0.73 -5.59 16 12 C -0.10 -2.92 3.73 -10.37 -0.04 -2.96 16 13 C 0.12 4.27 8.08 83.18 0.67 4.94 16 14 N -0.66 -32.18 3.42 -737.93 -2.53 -34.70 16 15 C -0.29 -17.60 11.03 84.03 0.93 -16.67 16 16 H 0.04 2.85 8.06 -2.91 -0.02 2.83 16 17 C -0.09 -5.81 5.50 84.86 0.47 -5.34 16 18 N -0.97 -67.02 13.70 21.65 0.30 -66.73 16 19 Si 1.10 55.61 25.50 68.60 1.75 57.36 16 20 H -0.29 -14.15 6.97 99.48 0.69 -13.46 16 21 H -0.24 -10.25 5.66 99.48 0.56 -9.68 16 22 H -0.30 -15.46 7.11 99.48 0.71 -14.75 16 23 C 0.10 3.64 5.15 83.26 0.43 4.07 16 24 H 0.06 1.72 6.50 -2.39 -0.02 1.71 16 25 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.42 5.29 8.60 -92.71 -0.80 4.50 16 28 H 0.17 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.16 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.12 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.14 2.34 8.14 -2.38 -0.02 2.32 16 34 H 0.05 1.66 6.43 -2.39 -0.02 1.64 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.24 16.89 8.73 -92.71 -0.81 16.08 16 37 H 0.07 2.39 7.02 -2.38 -0.02 2.37 16 38 H 0.03 1.35 6.21 -2.39 -0.01 1.34 16 Total: -1.00 -94.43 315.71 3.54 -90.89 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 0.08 Total: 5.67 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 4.79 Total: 3.32 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -4.48 Total: -120.09 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.04 Total: -25.04 kcal Atomic # 9 Polarization: -13.56 SS G_CDS: 1.45 Total: -12.10 kcal Atomic # 14 Polarization: 55.61 SS G_CDS: 1.75 Total: 57.36 kcal Total: -94.43 3.54 -90.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734119993.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.425 kcal (2) G-P(sol) polarization free energy of solvation -94.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds