Wall clock time and date at job start Mon Mar 30 2020 02:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38375 * 119.92694 * 2 1 4 4 C 1.38340 * 120.29176 * 179.76925 * 3 2 1 5 5 C 1.37977 * 120.14340 * 0.50908 * 4 3 2 6 6 C 1.39554 * 119.85387 * 359.74876 * 5 4 3 7 7 C 1.47847 * 120.14539 * 179.97438 * 6 5 4 8 8 O 1.21548 * 119.99959 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99772 * 0.02562 * 7 6 5 10 10 C 1.46497 * 119.99571 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47146 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.46609 * 305.00047 * 11 10 9 13 13 C 1.53003 * 109.47526 * 64.99676 * 11 10 9 14 14 C 1.52996 * 109.47463 * 185.00381 * 11 10 9 15 15 N 1.46496 * 109.47267 * 174.99768 * 14 11 10 16 16 C 1.36942 * 120.00252 * 179.97438 * 15 14 11 17 17 H 1.08007 * 119.99645 * 0.02562 * 16 15 14 18 18 C 1.38807 * 120.00278 * 179.97438 * 16 15 14 19 19 N 1.31621 * 119.99965 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00069 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47017 * 60.00137 * 20 18 16 22 22 H 1.48494 * 109.46921 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46932 * 300.00118 * 20 18 16 24 24 C 1.37937 * 119.92606 * 180.28266 * 2 1 3 25 25 H 1.09001 * 109.46953 * 269.71897 * 1 2 3 26 26 H 1.09000 * 109.47318 * 29.71494 * 1 2 3 27 27 H 1.09000 * 109.47161 * 149.72125 * 1 2 3 28 28 H 1.08007 * 119.85448 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.92587 * 180.25865 * 4 3 2 30 30 H 1.07998 * 120.07133 * 179.72192 * 5 4 3 31 31 H 0.96991 * 120.00377 * 0.02562 * 9 7 6 32 32 H 1.09006 * 109.47717 * 300.00232 * 10 9 7 33 33 H 1.08998 * 109.47624 * 60.00227 * 10 9 7 34 34 H 1.09002 * 109.46814 * 300.00662 * 13 11 10 35 35 H 1.08997 * 109.46365 * 60.00043 * 13 11 10 36 36 H 1.08992 * 109.46993 * 180.02562 * 13 11 10 37 37 H 1.09008 * 109.46560 * 294.99318 * 14 11 10 38 38 H 1.08997 * 109.47299 * 54.99090 * 14 11 10 39 39 H 0.96993 * 120.00241 * 359.97438 * 15 14 11 40 40 H 0.97005 * 119.99740 * 180.02562 * 19 18 16 41 41 H 1.07997 * 120.07445 * 359.95257 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5808 1.2081 0.0048 5 6 4.2813 0.0193 -0.0010 6 6 3.5912 -1.1936 -0.0064 7 6 4.3353 -2.4712 -0.0131 8 8 3.7315 -3.5261 -0.0183 9 7 5.6830 -2.4660 -0.0136 10 6 6.4203 -3.7319 -0.0208 11 6 7.9235 -3.4467 -0.0191 12 1 8.1705 -2.7950 -0.8572 13 6 8.3109 -2.7601 1.2922 14 6 8.6925 -4.7626 -0.1525 15 7 10.1253 -4.4810 -0.2710 16 6 11.0172 -5.5119 -0.4015 17 1 10.6642 -6.5326 -0.4176 18 6 12.3747 -5.2452 -0.5143 19 7 12.8048 -4.0013 -0.4952 20 14 13.5913 -6.6514 -0.6932 21 1 13.2749 -7.4266 -1.9197 22 1 14.9682 -6.1048 -0.7951 23 1 13.4976 -7.5407 0.4924 24 6 2.1952 -1.1954 -0.0059 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3634 0.8925 -0.5094 27 1 -0.3633 -0.8875 -0.5182 28 1 1.6538 2.1325 0.0004 29 1 4.1136 2.1475 0.0090 30 1 5.3612 0.0276 -0.0017 31 1 6.1648 -1.6242 -0.0091 32 1 6.1595 -4.3095 0.8660 33 1 6.1589 -4.2996 -0.9139 34 1 7.7630 -1.8226 1.3871 35 1 8.0638 -3.4118 2.1302 36 1 9.3817 -2.5566 1.2931 37 1 8.5149 -5.3781 0.7294 38 1 8.3519 -5.2940 -1.0411 39 1 10.4422 -3.5645 -0.2569 40 1 13.7534 -3.8149 -0.5744 41 1 1.6552 -2.1307 -0.0097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753614593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:13 Heat of formation + Delta-G solvation = -17.256441 kcal Electronic energy + Delta-G solvation = -20234.257085 eV Core-core repulsion = 17113.609110 eV Total energy + Delta-G solvation = -3120.647975 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.38373 -38.72191 -36.79692 -34.46760 -33.32906 -32.33543 -31.36217 -29.99112 -27.38451 -26.53445 -25.49109 -23.72853 -22.24878 -22.11862 -20.45468 -19.75682 -17.89488 -16.99446 -16.44479 -16.13876 -15.49342 -15.11409 -14.90684 -14.44005 -14.39299 -13.96405 -13.88568 -13.60721 -13.38059 -12.98227 -12.68679 -12.58140 -12.39231 -12.17041 -12.03332 -11.90078 -11.38574 -11.06378 -10.90406 -10.70542 -10.57997 -10.42988 -10.13322 -9.92798 -9.66578 -9.30606 -9.09112 -8.96048 -8.87003 -6.92283 -5.76838 -3.05252 0.60040 1.03656 2.72632 3.11036 3.44926 3.49056 3.50223 3.62305 4.42756 4.46543 4.54834 4.59404 4.80460 4.94788 4.98478 5.05944 5.21177 5.25392 5.29592 5.37587 5.41979 5.57939 5.63414 5.73881 5.80741 5.95276 5.97841 6.02475 6.05855 6.11151 6.20689 6.23479 6.38561 6.45821 6.58718 6.64863 6.77071 6.86564 7.45407 7.70257 8.14683 8.42402 9.53541 10.10772 10.45625 11.46115 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.046953 B = 0.002630 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.199807 B =10642.272808 C =11080.199570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.097 4.097 3 C -0.099 4.099 4 C -0.123 4.123 5 C -0.092 4.092 6 C -0.127 4.127 7 C 0.554 3.446 8 O -0.540 6.540 9 N -0.719 5.719 10 C 0.126 3.874 11 C -0.111 4.111 12 H 0.077 0.923 13 C -0.142 4.142 14 C 0.161 3.839 15 N -0.731 5.731 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.935 5.935 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.062 4.062 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.127 0.873 31 H 0.400 0.600 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.041 0.959 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.023 0.977 38 H 0.021 0.979 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.521 12.822 1.865 25.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.097 4.097 3 C -0.117 4.117 4 C -0.141 4.141 5 C -0.111 4.111 6 C -0.130 4.130 7 C 0.341 3.659 8 O -0.418 6.418 9 N -0.371 5.371 10 C 0.003 3.997 11 C -0.130 4.130 12 H 0.095 0.905 13 C -0.199 4.199 14 C 0.032 3.968 15 N -0.375 5.375 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.584 5.584 20 Si 0.739 3.261 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.081 4.081 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.143 0.857 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.235 0.765 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.040 0.960 38 H 0.039 0.961 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -22.844 11.871 1.847 25.810 hybrid contribution 1.221 0.016 -0.105 1.226 sum -21.622 11.887 1.741 24.736 Atomic orbital electron populations 1.20806 0.90674 1.03048 1.02590 1.19923 0.96489 0.92814 1.00439 1.21252 0.94339 0.97661 0.98432 1.21106 0.94264 0.98087 1.00632 1.21347 0.99956 0.91838 0.97961 1.20008 0.94422 0.93043 1.05569 1.18270 0.82229 0.88763 0.76624 1.90768 1.68556 1.32528 1.49966 1.45992 1.05929 1.10492 1.74650 1.21457 0.90897 0.84822 1.02567 1.21562 0.92501 0.99793 0.99153 0.90513 1.21796 1.02568 0.98946 0.96598 1.20572 0.85602 0.92540 0.98044 1.42329 0.99735 1.06878 1.88593 1.19197 0.87637 0.88193 1.41988 0.91198 1.24738 0.96961 0.96349 1.03003 1.69648 1.14092 1.17077 1.57564 0.86247 0.80528 0.81353 0.77946 1.21266 1.21707 1.21256 1.21173 0.92673 0.98408 0.95847 0.90961 0.91376 0.91228 0.85656 0.85285 0.85506 0.76455 0.91156 0.91157 0.93992 0.92748 0.91084 0.95955 0.96089 0.78212 0.93485 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.01 0.36 -0.32 16 2 C -0.10 -0.82 5.87 -104.68 -0.61 -1.43 16 3 C -0.10 -0.74 9.69 -39.49 -0.38 -1.12 16 4 C -0.12 -0.94 10.03 -39.64 -0.40 -1.34 16 5 C -0.09 -0.83 9.54 -39.19 -0.37 -1.21 16 6 C -0.13 -1.45 5.87 -104.97 -0.62 -2.06 16 7 C 0.55 7.66 7.77 -12.33 -0.10 7.57 16 8 O -0.54 -9.33 16.35 5.32 0.09 -9.24 16 9 N -0.72 -8.90 5.23 -61.25 -0.32 -9.22 16 10 C 0.13 1.78 5.06 -4.04 -0.02 1.76 16 11 C -0.11 -1.72 2.46 -90.62 -0.22 -1.94 16 12 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 13 C -0.14 -2.09 8.94 37.16 0.33 -1.76 16 14 C 0.16 3.20 5.65 -4.05 -0.02 3.18 16 15 N -0.73 -18.34 5.33 -59.91 -0.32 -18.66 16 16 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 17 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 19 N -0.94 -28.17 13.06 55.49 0.72 -27.45 16 20 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 C -0.06 -0.66 9.24 -39.19 -0.36 -1.02 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 27 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 28 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 29 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 30 H 0.13 0.91 6.41 -52.49 -0.34 0.58 16 31 H 0.40 4.02 5.69 -40.82 -0.23 3.78 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.04 0.50 7.18 -51.93 -0.37 0.13 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.22 7.18 -51.93 -0.37 0.85 16 37 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.38 9.99 6.85 -40.82 -0.28 9.71 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.14 1.47 7.65 -52.49 -0.40 1.07 16 LS Contribution 342.86 15.07 5.17 5.17 Total: -1.00 -33.00 342.86 -8.53 -41.53 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -6.19 Total: 7.48 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -2.66 Total: -7.09 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.08 Total: -55.33 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.00 -8.53 -41.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753614593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.275 kcal (2) G-P(sol) polarization free energy of solvation -32.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds