Wall clock time and date at job start Mon Mar 30 2020 01:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38110 * 120.04097 * 2 1 4 4 C 1.38276 * 120.07475 * 179.72306 * 3 2 1 5 5 C 1.38283 * 120.13794 * 0.27089 * 4 3 2 6 6 C 1.38110 * 120.07399 * 359.95841 * 5 4 3 7 7 C 1.50701 * 120.03559 * 180.02562 * 6 5 4 8 8 C 1.38871 * 119.92647 * 0.02562 * 6 5 4 9 9 N 1.39931 * 120.06773 * 180.02562 * 8 6 5 10 10 C 1.34780 * 119.99799 * 244.25172 * 9 8 6 11 11 O 1.21285 * 119.99933 * 4.82283 * 10 9 8 12 12 C 1.50700 * 119.99779 * 184.82187 * 10 9 8 13 13 N 1.46903 * 109.46897 * 180.02562 * 12 10 9 14 14 C 1.46895 * 111.00116 * 66.04390 * 13 12 10 15 15 C 1.46896 * 110.99851 * 189.99901 * 13 12 10 16 16 C 1.50704 * 109.47175 * 169.99793 * 15 13 12 17 17 H 1.08001 * 119.99964 * 359.97438 * 16 15 13 18 18 C 1.37873 * 119.99692 * 179.97438 * 16 15 13 19 19 N 1.31513 * 119.99712 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00644 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47025 * 89.99415 * 20 18 16 22 22 H 1.48494 * 109.47271 * 210.00091 * 20 18 16 23 23 H 1.48503 * 109.46789 * 330.00127 * 20 18 16 24 24 H 1.08997 * 109.47055 * 96.71433 * 1 2 3 25 25 H 1.08990 * 109.47269 * 216.72020 * 1 2 3 26 26 H 1.09004 * 109.46905 * 336.72290 * 1 2 3 27 27 H 1.08006 * 119.95993 * 359.97438 * 3 2 1 28 28 H 1.07996 * 119.93491 * 180.25426 * 4 3 2 29 29 H 1.08006 * 119.96205 * 179.97438 * 5 4 3 30 30 H 1.09007 * 109.46789 * 90.00412 * 7 6 5 31 31 H 1.08999 * 109.46720 * 209.99805 * 7 6 5 32 32 H 1.08999 * 109.47511 * 330.00355 * 7 6 5 33 33 H 0.96992 * 119.99782 * 64.25430 * 9 8 6 34 34 H 1.09003 * 109.46698 * 299.99616 * 12 10 9 35 35 H 1.08995 * 109.46927 * 60.00082 * 12 10 9 36 36 H 1.08998 * 109.47256 * 60.00048 * 14 13 12 37 37 H 1.09004 * 109.47351 * 180.02562 * 14 13 12 38 38 H 1.09006 * 109.47152 * 299.99768 * 14 13 12 39 39 H 1.09003 * 109.47357 * 290.00005 * 15 13 12 40 40 H 1.09000 * 109.47011 * 49.99616 * 15 13 12 41 41 H 0.96999 * 120.00343 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1956 0.0000 4 6 3.5812 1.1964 0.0058 5 6 4.2762 0.0009 0.0059 6 6 3.5908 -1.1981 0.0012 7 6 4.3491 -2.5004 0.0019 8 6 2.2021 -1.2023 -0.0043 9 7 1.5047 -2.4154 -0.0086 10 6 0.7334 -2.7455 -1.0634 11 8 0.7120 -2.0339 -2.0454 12 6 -0.1025 -3.9988 -1.0227 13 7 -0.8453 -4.1331 -2.2830 14 6 0.0682 -4.3586 -3.4111 15 6 -1.8454 -5.2053 -2.1929 16 6 -2.7466 -5.1543 -3.3997 17 1 -2.5922 -4.4005 -4.1575 18 6 -3.7682 -6.0700 -3.5362 19 7 -4.5550 -6.0253 -4.5890 20 14 -4.0359 -7.3734 -2.2251 21 1 -4.9721 -6.8549 -1.1955 22 1 -4.6113 -8.5921 -2.8487 23 1 -2.7369 -7.7093 -1.5886 24 1 -0.3633 -0.1202 -1.0206 25 1 -0.3633 -0.8237 0.6144 26 1 -0.3633 0.9441 0.4061 27 1 1.6584 2.1309 -0.0004 28 1 4.1195 2.1326 0.0099 29 1 5.3562 0.0049 0.0100 30 1 4.5278 -2.8162 1.0298 31 1 3.7648 -3.2613 -0.5155 32 1 5.3031 -2.3658 -0.5079 33 1 1.5763 -3.0186 0.7475 34 1 0.5468 -4.8643 -0.8901 35 1 -0.8046 -3.9404 -0.1911 36 1 0.6364 -5.2731 -3.2412 37 1 -0.5078 -4.4540 -4.3316 38 1 0.7537 -3.5156 -3.4976 39 1 -1.3407 -6.1708 -2.1568 40 1 -2.4402 -5.0723 -1.2893 41 1 -5.2741 -6.6692 -4.6850 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008092662.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:11 Heat of formation + Delta-G solvation = -1.097255 kcal Electronic energy + Delta-G solvation = -21345.743466 eV Core-core repulsion = 18225.796206 eV Total energy + Delta-G solvation = -3119.947260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.62607 -38.71191 -36.16968 -34.61045 -33.63768 -32.45547 -30.96157 -28.80571 -27.57786 -26.76259 -26.64006 -24.11295 -22.06880 -21.01826 -20.46192 -19.97898 -17.64511 -16.95142 -16.65792 -16.09526 -15.38454 -14.97750 -14.48063 -14.35057 -14.04661 -13.90233 -13.67468 -13.55415 -13.15754 -13.06057 -12.81149 -12.54228 -12.12574 -12.01060 -11.83912 -11.65197 -11.36145 -11.34126 -11.09010 -10.94714 -10.59087 -10.54893 -9.99407 -9.74143 -9.43989 -9.19107 -8.65142 -8.57343 -8.43433 -7.39875 -6.04457 -4.02109 1.18063 1.27416 2.83439 3.13776 3.27036 3.34423 3.34905 3.62311 4.40859 4.65399 4.71240 4.82274 4.86375 4.99229 5.12907 5.27028 5.27791 5.38266 5.41970 5.45934 5.56708 5.61469 5.68447 5.70168 5.77657 5.96623 6.19772 6.25400 6.29187 6.31313 6.34684 6.48569 6.56008 6.74559 6.85478 6.98332 7.03657 7.40173 7.56651 7.86573 7.98584 8.44012 8.65128 9.06090 9.56129 11.08729 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.033057 B = 0.003748 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.819259 B = 7469.210726 C = 7719.047138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.067 4.067 3 C -0.119 4.119 4 C -0.118 4.118 5 C -0.121 4.121 6 C -0.090 4.090 7 C -0.112 4.112 8 C 0.142 3.858 9 N -0.691 5.691 10 C 0.516 3.484 11 O -0.496 6.496 12 C 0.035 3.965 13 N -0.513 5.513 14 C 0.032 3.968 15 C 0.163 3.837 16 C -0.508 4.508 17 H 0.083 0.917 18 C 0.068 3.932 19 N -0.899 5.899 20 Si 0.875 3.125 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.268 1.268 24 H 0.085 0.915 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.123 0.877 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.405 0.595 34 H 0.053 0.947 35 H 0.099 0.901 36 H 0.006 0.994 37 H 0.080 0.920 38 H 0.067 0.933 39 H -0.010 1.010 40 H 0.024 0.976 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.497 9.465 14.277 24.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.069 4.069 3 C -0.137 4.137 4 C -0.136 4.136 5 C -0.140 4.140 6 C -0.091 4.091 7 C -0.169 4.169 8 C 0.050 3.950 9 N -0.342 5.342 10 C 0.303 3.697 11 O -0.367 6.367 12 C -0.097 4.097 13 N -0.237 5.237 14 C -0.117 4.117 15 C 0.037 3.963 16 C -0.547 4.547 17 H 0.101 0.899 18 C -0.133 4.133 19 N -0.538 5.538 20 Si 0.702 3.298 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.193 1.193 24 H 0.103 0.897 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.141 0.859 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.241 0.759 34 H 0.071 0.929 35 H 0.117 0.883 36 H 0.024 0.976 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.008 0.992 40 H 0.042 0.958 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.998 10.286 13.341 23.932 hybrid contribution 0.207 -1.783 1.202 2.160 sum 17.205 8.503 14.543 24.079 Atomic orbital electron populations 1.20820 0.90655 1.02110 1.03714 1.20041 0.96564 0.92122 0.98147 1.20920 0.94164 0.97157 1.01508 1.21095 0.94219 0.97919 1.00373 1.20841 0.99542 0.91572 1.02050 1.19977 0.92476 0.95969 1.00716 1.20720 0.99782 0.94343 1.02079 1.17223 0.89630 0.85484 1.02665 1.43534 1.48912 1.19850 1.21927 1.21049 0.78894 0.87799 0.81936 1.90689 1.62778 1.51979 1.31253 1.21985 0.96840 0.93591 0.97251 1.61684 1.14092 1.47852 1.00046 1.22409 0.95621 0.97997 0.95623 1.20241 0.90426 0.87102 0.98574 1.21014 1.12351 1.15738 1.05553 0.89943 1.24898 0.95638 0.97313 0.95499 1.69892 1.18746 1.36860 1.28330 0.86868 0.78716 0.81809 0.82370 1.20123 1.21176 1.19334 0.89687 0.91749 0.91845 0.85880 0.86058 0.86004 0.91249 0.91434 0.91436 0.75931 0.92928 0.88295 0.97602 0.90081 0.91464 0.99245 0.95775 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 8.59 36.01 0.31 -1.19 16 2 C -0.07 -0.87 5.59 -104.43 -0.58 -1.45 16 3 C -0.12 -1.33 9.67 -39.61 -0.38 -1.71 16 4 C -0.12 -1.17 10.04 -39.55 -0.40 -1.57 16 5 C -0.12 -1.22 9.70 -39.61 -0.38 -1.61 16 6 C -0.09 -1.00 5.90 -104.43 -0.62 -1.62 16 7 C -0.11 -1.00 9.77 36.01 0.35 -0.65 16 8 C 0.14 1.81 5.53 -83.69 -0.46 1.35 16 9 N -0.69 -8.30 3.63 -9.86 -0.04 -8.33 16 10 C 0.52 8.13 6.40 -10.98 -0.07 8.06 16 11 O -0.50 -9.80 12.73 5.55 0.07 -9.73 16 12 C 0.04 0.57 5.45 -4.97 -0.03 0.55 16 13 N -0.51 -11.05 4.49 -245.82 -1.10 -12.16 16 14 C 0.03 0.66 9.03 60.06 0.54 1.20 16 15 C 0.16 3.92 3.79 -4.98 -0.02 3.90 16 16 C -0.51 -14.60 9.01 -34.44 -0.31 -14.91 16 17 H 0.08 2.62 7.37 -52.49 -0.39 2.23 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 19 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 20 Si 0.88 21.22 27.47 -169.99 -4.67 16.56 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 24 H 0.08 1.34 7.17 -51.93 -0.37 0.96 16 25 H 0.06 0.81 7.55 -51.93 -0.39 0.42 16 26 H 0.06 0.68 8.04 -51.93 -0.42 0.26 16 27 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 28 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 29 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.67 7.46 -51.93 -0.39 0.28 16 32 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 33 H 0.40 3.54 8.83 -40.82 -0.36 3.18 16 34 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 35 H 0.10 1.43 7.93 -51.93 -0.41 1.02 16 36 H 0.01 0.11 8.14 -51.93 -0.42 -0.32 16 37 H 0.08 1.87 6.76 -51.93 -0.35 1.52 16 38 H 0.07 1.37 5.88 -51.93 -0.31 1.07 16 39 H -0.01 -0.24 7.18 -51.93 -0.37 -0.61 16 40 H 0.02 0.57 7.36 -51.93 -0.38 0.18 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 333.45 15.07 5.03 5.03 Total: -1.00 -33.81 333.45 -8.35 -42.16 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.26 Total: 1.20 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -2.15 Total: -7.78 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.37 Total: -47.43 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.07 Total: -9.73 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.81 -8.35 -42.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008092662.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.065 kcal (2) G-P(sol) polarization free energy of solvation -33.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds