Wall clock time and date at job start Mon Mar 30 2020 01:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38285 * 119.92737 * 2 1 4 4 C 1.38108 * 120.06571 * 180.27886 * 3 2 1 5 5 C 1.38867 * 119.93356 * 359.46922 * 4 3 2 6 6 N 1.39928 * 120.07457 * 180.29859 * 5 4 3 7 7 C 1.34776 * 120.00129 * 213.23829 * 6 5 4 8 8 O 1.21289 * 119.99954 * 5.12289 * 7 6 5 9 9 C 1.50698 * 120.00009 * 185.12428 * 7 6 5 10 10 N 1.46898 * 109.47234 * 180.02562 * 9 7 6 11 11 C 1.46897 * 111.00197 * 66.04357 * 10 9 7 12 12 C 1.46895 * 111.00280 * 189.99979 * 10 9 7 13 13 H 1.09006 * 109.47089 * 55.00044 * 12 10 9 14 14 C 1.52998 * 109.47134 * 295.00000 * 12 10 9 15 15 C 1.50701 * 109.47638 * 174.99884 * 12 10 9 16 16 H 1.08007 * 119.99647 * 5.30594 * 15 12 10 17 17 C 1.37868 * 120.00466 * 185.31067 * 15 12 10 18 18 N 1.31522 * 120.00059 * 6.82322 * 17 15 12 19 19 Si 1.86797 * 120.00355 * 186.82171 * 17 15 12 20 20 H 1.48511 * 109.47026 * 94.98696 * 19 17 15 21 21 H 1.48497 * 109.47788 * 214.98594 * 19 17 15 22 22 H 1.48497 * 109.47074 * 334.99245 * 19 17 15 23 23 C 1.38878 * 119.85548 * 0.27544 * 5 4 3 24 24 C 1.38105 * 119.93134 * 359.97438 * 23 5 4 25 25 H 1.08994 * 109.47265 * 270.23315 * 1 2 3 26 26 H 1.09005 * 109.47338 * 30.23101 * 1 2 3 27 27 H 1.09001 * 109.47365 * 150.22959 * 1 2 3 28 28 H 1.08004 * 119.96739 * 0.04434 * 3 2 1 29 29 H 1.08007 * 120.03548 * 179.74461 * 4 3 2 30 30 H 0.97003 * 119.99493 * 33.24252 * 6 5 4 31 31 H 1.09003 * 109.47252 * 300.00253 * 9 7 6 32 32 H 1.09002 * 109.46851 * 60.00291 * 9 7 6 33 33 H 1.09000 * 109.46977 * 60.00426 * 11 10 9 34 34 H 1.09005 * 109.47392 * 180.02562 * 11 10 9 35 35 H 1.09002 * 109.47136 * 300.00280 * 11 10 9 36 36 H 1.09000 * 109.47181 * 54.23649 * 14 12 10 37 37 H 1.09000 * 109.47255 * 174.23141 * 14 12 10 38 38 H 1.08995 * 109.47096 * 294.23074 * 14 12 10 39 39 H 0.96994 * 119.99972 * 179.97438 * 18 17 15 40 40 H 1.08000 * 120.03019 * 180.02562 * 23 5 4 41 41 H 1.08000 * 119.96841 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2018 -0.0058 5 6 4.2738 0.0001 -0.0005 6 7 5.6731 0.0001 -0.0001 7 6 6.3472 -0.9789 -0.6355 8 8 5.7446 -1.8070 -1.2852 9 6 7.8496 -1.0445 -0.5387 10 7 8.3406 -2.1922 -1.3130 11 6 8.0907 -2.0045 -2.7484 12 6 9.7666 -2.4311 -1.0538 13 1 9.9263 -2.5483 0.0181 14 6 10.5838 -1.2427 -1.5642 15 6 10.2038 -3.6847 -1.7668 16 1 9.5176 -4.2004 -2.4223 17 6 11.4798 -4.1733 -1.5824 18 7 12.2702 -3.6260 -0.6849 19 14 12.0859 -5.6128 -2.6071 20 1 12.8330 -5.1022 -3.7847 21 1 12.9817 -6.4642 -1.7838 22 1 10.9250 -6.4161 -3.0677 23 6 3.5780 -1.2018 0.0048 24 6 2.1969 -1.1984 0.0054 25 1 -0.3633 0.0042 1.0276 26 1 -0.3634 0.8879 -0.5174 27 1 -0.3634 -0.8920 -0.5103 28 1 1.6552 2.1328 0.0007 29 1 4.1163 2.1381 -0.0100 30 1 6.1579 0.7046 0.4576 31 1 8.2800 -0.1262 -0.9383 32 1 8.1418 -1.1585 0.5053 33 1 8.6035 -1.1061 -3.0920 34 1 8.4635 -2.8688 -3.2982 35 1 7.0194 -1.8996 -2.9201 36 1 10.1996 -0.3220 -1.1250 37 1 11.6285 -1.3717 -1.2813 38 1 10.5056 -1.1875 -2.6500 39 1 13.1678 -3.9701 -0.5549 40 1 4.1163 -2.1380 0.0094 41 1 1.6552 -2.1327 0.0091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047265312.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:22 Heat of formation + Delta-G solvation = -0.564932 kcal Electronic energy + Delta-G solvation = -20983.912638 eV Core-core repulsion = 17863.988461 eV Total energy + Delta-G solvation = -3119.924177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.43837 -38.72149 -36.75388 -34.88944 -32.68167 -31.68284 -30.97285 -29.26480 -27.79194 -26.12540 -25.14442 -23.95075 -23.02118 -21.56098 -20.27167 -19.27873 -17.65570 -16.95383 -16.07880 -15.60713 -15.42767 -14.98653 -14.54099 -14.35595 -14.11048 -13.85480 -13.63320 -13.51132 -13.19566 -12.63978 -12.59865 -12.36530 -12.18816 -11.69909 -11.67878 -11.18662 -11.05644 -10.96706 -10.88186 -10.79860 -10.51154 -10.15072 -10.11293 -9.94089 -9.34366 -8.96813 -8.89441 -8.37867 -7.97168 -7.19486 -6.04345 -4.04042 1.23187 1.37834 2.84617 3.11727 3.31826 3.38856 3.44073 3.77446 4.42720 4.72321 4.80865 4.95171 4.99298 5.07749 5.19514 5.30930 5.34698 5.42965 5.54789 5.68103 5.71529 5.77069 5.79990 5.98815 6.26201 6.29580 6.36490 6.40795 6.53111 6.57586 6.61471 6.72676 6.94645 6.99936 7.05740 7.33512 7.49418 7.55762 7.82987 8.05741 8.28586 8.38553 8.56076 9.01555 9.59839 11.05753 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.041292 B = 0.003249 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.927589 B = 8614.894841 C = 8985.274054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.112 4.112 3 C -0.103 4.103 4 C -0.149 4.149 5 C 0.153 3.847 6 N -0.684 5.684 7 C 0.513 3.487 8 O -0.497 6.497 9 C 0.037 3.963 10 N -0.516 5.516 11 C 0.029 3.971 12 C 0.210 3.790 13 H 0.046 0.954 14 C -0.167 4.167 15 C -0.500 4.500 16 H 0.065 0.935 17 C 0.060 3.940 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.273 1.273 23 C -0.118 4.118 24 C -0.100 4.100 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.408 0.592 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.010 0.990 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.010 0.990 37 H 0.072 0.928 38 H 0.035 0.965 39 H 0.260 0.740 40 H 0.138 0.862 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.409 11.456 3.309 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.113 4.113 3 C -0.121 4.121 4 C -0.170 4.170 5 C 0.058 3.942 6 N -0.331 5.331 7 C 0.301 3.699 8 O -0.369 6.369 9 C -0.095 4.095 10 N -0.240 5.240 11 C -0.119 4.119 12 C 0.104 3.896 13 H 0.064 0.936 14 C -0.227 4.227 15 C -0.539 4.539 16 H 0.083 0.917 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.197 1.197 23 C -0.138 4.138 24 C -0.119 4.119 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.244 0.756 31 H 0.075 0.925 32 H 0.118 0.882 33 H 0.028 0.972 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.029 0.971 37 H 0.091 0.909 38 H 0.054 0.946 39 H 0.070 0.930 40 H 0.155 0.845 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.823 10.343 3.049 20.831 hybrid contribution 1.304 0.446 -0.521 1.474 sum -16.518 10.789 2.528 19.891 Atomic orbital electron populations 1.20732 0.91385 1.02538 1.01999 1.19866 0.95996 0.93193 1.02277 1.20755 0.93305 0.97473 1.00612 1.20866 0.94496 0.96440 1.05185 1.17797 0.82964 0.93981 0.99448 1.43768 1.04383 1.29648 1.55297 1.21308 0.90957 0.79937 0.77711 1.90664 1.69974 1.38143 1.38100 1.21952 0.89405 0.96306 1.01804 1.62121 1.21100 1.34096 1.06670 1.22389 1.00128 1.00146 0.89265 1.19400 0.79208 0.93426 0.97606 0.93568 1.22381 1.03864 0.96974 0.99441 1.21096 0.97297 1.08650 1.26810 0.91704 1.24914 0.96924 0.97045 0.95235 1.69947 1.08384 1.42337 1.32746 0.86525 0.78750 0.82309 0.80129 1.20848 1.21308 1.19731 1.21243 0.94129 0.98006 1.00432 1.20931 0.93618 0.97564 0.99762 0.91496 0.91834 0.91707 0.86030 0.85899 0.75617 0.92520 0.88202 0.97191 0.90621 0.92083 0.97100 0.90908 0.94593 0.93013 0.84459 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.01 0.36 -0.47 16 2 C -0.11 -1.18 5.88 -104.59 -0.62 -1.79 16 3 C -0.10 -1.03 9.69 -39.61 -0.38 -1.41 16 4 C -0.15 -1.62 9.96 -39.40 -0.39 -2.01 16 5 C 0.15 2.01 6.28 -83.69 -0.53 1.48 16 6 N -0.68 -8.69 5.34 -9.86 -0.05 -8.74 16 7 C 0.51 8.45 7.30 -10.99 -0.08 8.37 16 8 O -0.50 -9.91 11.99 5.55 0.07 -9.84 16 9 C 0.04 0.64 4.90 -4.98 -0.02 0.61 16 10 N -0.52 -11.29 4.48 -237.73 -1.06 -12.36 16 11 C 0.03 0.61 8.45 60.06 0.51 1.11 16 12 C 0.21 5.18 2.21 -68.87 -0.15 5.02 16 13 H 0.05 1.25 8.00 -51.93 -0.42 0.83 16 14 C -0.17 -3.84 8.21 37.16 0.31 -3.54 16 15 C -0.50 -13.73 7.93 -34.44 -0.27 -14.00 16 16 H 0.06 1.81 6.57 -52.48 -0.34 1.47 16 17 C 0.06 1.66 5.27 -17.82 -0.09 1.56 16 18 N -0.90 -25.40 12.06 55.43 0.67 -24.73 16 19 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 C -0.12 -1.67 8.66 -39.39 -0.34 -2.01 16 24 C -0.10 -1.20 9.69 -39.61 -0.38 -1.58 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 27 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 28 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 29 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 30 H 0.41 3.77 8.82 -40.82 -0.36 3.41 16 31 H 0.06 0.89 6.81 -51.93 -0.35 0.54 16 32 H 0.10 1.60 8.00 -51.93 -0.42 1.18 16 33 H 0.01 0.19 6.64 -51.93 -0.34 -0.15 16 34 H 0.08 1.70 6.32 -51.93 -0.33 1.37 16 35 H 0.06 1.26 5.88 -51.93 -0.31 0.95 16 36 H 0.01 0.20 6.48 -51.93 -0.34 -0.13 16 37 H 0.07 1.84 6.92 -51.93 -0.36 1.48 16 38 H 0.03 0.82 6.80 -51.93 -0.35 0.46 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.14 2.22 6.41 -52.49 -0.34 1.89 16 41 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 329.63 15.07 4.97 4.97 Total: -1.00 -31.32 329.63 -8.45 -39.77 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -5.92 Total: 3.13 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -2.09 Total: -8.64 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: -0.45 Total: -45.83 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.07 Total: -9.84 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.32 -8.45 -39.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047265312.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.203 kcal (2) G-P(sol) polarization free energy of solvation -31.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds