Wall clock time and date at job start Mon Mar 30 2020 01:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38115 * 120.03416 * 2 1 4 4 C 1.38277 * 120.07090 * 179.72010 * 3 2 1 5 5 C 1.38286 * 120.14378 * 0.28312 * 4 3 2 6 6 C 1.38111 * 120.06780 * 359.94994 * 5 4 3 7 7 C 1.50700 * 120.03646 * 180.02562 * 6 5 4 8 8 C 1.38870 * 120.04009 * 180.21023 * 2 1 3 9 9 N 1.39932 * 120.06761 * 0.02562 * 8 2 1 10 10 C 1.34780 * 119.99813 * 64.54780 * 9 8 2 11 11 O 1.21288 * 120.00239 * 4.83337 * 10 9 8 12 12 C 1.50696 * 119.99632 * 184.83418 * 10 9 8 13 13 N 1.46900 * 109.47020 * 179.97438 * 12 10 9 14 14 C 1.46897 * 111.00239 * 180.02562 * 13 12 10 15 15 H 1.09008 * 109.46853 * 324.99888 * 14 13 12 16 16 C 1.52996 * 109.47524 * 84.99674 * 14 13 12 17 17 C 1.50700 * 109.47425 * 205.00046 * 14 13 12 18 18 H 1.07998 * 119.99847 * 359.97438 * 17 14 13 19 19 C 1.37878 * 120.00281 * 179.97438 * 17 14 13 20 20 N 1.31515 * 119.99967 * 0.02562 * 19 17 14 21 21 Si 1.86798 * 119.99979 * 179.97438 * 19 17 14 22 22 H 1.48505 * 109.47079 * 90.00273 * 21 19 17 23 23 H 1.48505 * 109.47172 * 210.00050 * 21 19 17 24 24 H 1.48499 * 109.47451 * 330.00459 * 21 19 17 25 25 H 1.09004 * 109.46822 * 96.71761 * 1 2 3 26 26 H 1.09006 * 109.46678 * 216.70845 * 1 2 3 27 27 H 1.08996 * 109.47215 * 336.71524 * 1 2 3 28 28 H 1.08001 * 119.96283 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.92924 * 180.25485 * 4 3 2 30 30 H 1.07995 * 119.96451 * 179.97438 * 5 4 3 31 31 H 1.08997 * 109.46879 * 90.00290 * 7 6 5 32 32 H 1.08999 * 109.47171 * 209.99929 * 7 6 5 33 33 H 1.09002 * 109.47125 * 330.00640 * 7 6 5 34 34 H 0.96993 * 120.00219 * 244.54188 * 9 8 2 35 35 H 1.09000 * 109.47410 * 299.99530 * 12 10 9 36 36 H 1.08999 * 109.47390 * 59.99914 * 12 10 9 37 37 H 1.00903 * 110.99740 * 303.94961 * 13 12 10 38 38 H 1.09001 * 109.47273 * 60.00188 * 16 14 13 39 39 H 1.08996 * 109.47654 * 180.02562 * 16 14 13 40 40 H 1.09008 * 109.47311 * 300.00474 * 16 14 13 41 41 H 0.97000 * 120.00086 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1957 0.0000 4 6 3.5811 1.1966 0.0058 5 6 4.2763 0.0012 0.0058 6 6 3.5909 -1.1979 0.0010 7 6 4.3493 -2.5002 0.0015 8 6 2.2022 -1.2022 -0.0044 9 7 1.5048 -2.4153 -0.0094 10 6 0.7345 -2.7454 -1.0650 11 8 0.7141 -2.0339 -2.0470 12 6 -0.1015 -3.9986 -1.0249 13 7 -0.8441 -4.1323 -2.2854 14 6 -1.6725 -5.3453 -2.2823 15 1 -1.1563 -6.1364 -1.7383 16 6 -3.0102 -5.0478 -1.6019 17 6 -1.9184 -5.7894 -3.7012 18 1 -1.5014 -5.2265 -4.5231 19 6 -2.6758 -6.9143 -3.9501 20 7 -3.1841 -7.5995 -2.9492 21 14 -2.9812 -7.4643 -5.7090 22 1 -1.9061 -8.3986 -6.1292 23 1 -4.2949 -8.1520 -5.7916 24 1 -2.9854 -6.2797 -6.6044 25 1 -0.3633 -0.1202 -1.0207 26 1 -0.3633 -0.8239 0.6143 27 1 -0.3633 0.9439 0.4062 28 1 1.6582 2.1310 0.0004 29 1 4.1193 2.1329 0.0100 30 1 5.3562 0.0053 0.0100 31 1 4.5281 -2.8160 1.0293 32 1 3.7650 -3.2610 -0.5160 33 1 5.3032 -2.3653 -0.5083 34 1 1.5758 -3.0187 0.7467 35 1 0.5474 -4.8642 -0.8917 36 1 -0.8045 -3.9401 -0.1940 37 1 -1.4047 -3.3124 -2.4634 38 1 -3.5264 -4.2567 -2.1458 39 1 -3.6247 -5.9479 -1.5992 40 1 -2.8323 -4.7265 -0.5755 41 1 -3.7173 -8.3907 -3.1243 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068615035.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:30 Heat of formation + Delta-G solvation = -14.559687 kcal Electronic energy + Delta-G solvation = -21137.380670 eV Core-core repulsion = 18016.849635 eV Total energy + Delta-G solvation = -3120.531035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.56422 -38.54897 -35.76597 -34.58982 -33.62812 -32.49258 -30.89529 -29.15756 -27.27023 -26.71547 -25.32443 -24.85319 -21.95414 -20.99352 -20.23418 -20.11426 -17.69873 -16.94477 -16.19635 -15.90252 -15.37507 -14.90061 -14.65735 -14.25215 -13.97204 -13.75736 -13.41787 -13.20803 -13.05363 -12.85907 -12.74962 -12.59302 -11.99800 -11.72191 -11.65942 -11.56329 -11.34962 -11.25230 -10.92551 -10.80748 -10.55910 -10.15340 -9.97921 -9.74403 -9.46902 -9.00589 -8.63989 -8.41470 -8.35970 -7.27873 -5.98912 -4.01418 1.20338 1.28545 2.88852 3.20766 3.34924 3.40715 3.46667 3.64186 4.45874 4.67885 4.73477 4.86357 5.04241 5.15936 5.28382 5.32587 5.34495 5.41830 5.46361 5.48714 5.66253 5.71227 5.74589 5.80597 5.83934 5.99062 6.19495 6.32480 6.35806 6.49764 6.58151 6.62920 6.80144 7.02817 7.03590 7.24668 7.51099 7.71716 7.88382 8.23275 8.43274 8.51031 8.59155 9.06657 9.63996 11.08404 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.031944 B = 0.003486 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.326768 B = 8029.811825 C = 8249.359298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.070 4.070 3 C -0.119 4.119 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.088 4.088 7 C -0.114 4.114 8 C 0.144 3.856 9 N -0.691 5.691 10 C 0.514 3.486 11 O -0.505 6.505 12 C 0.045 3.955 13 N -0.667 5.667 14 C 0.212 3.788 15 H 0.035 0.965 16 C -0.170 4.170 17 C -0.494 4.494 18 H 0.064 0.936 19 C 0.055 3.945 20 N -0.899 5.899 21 Si 0.899 3.101 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.274 1.274 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.406 0.594 35 H 0.095 0.905 36 H 0.050 0.950 37 H 0.335 0.665 38 H 0.029 0.971 39 H 0.091 0.909 40 H 0.004 0.996 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.940 13.511 11.542 21.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.072 4.072 3 C -0.138 4.138 4 C -0.137 4.137 5 C -0.139 4.139 6 C -0.090 4.090 7 C -0.171 4.171 8 C 0.051 3.949 9 N -0.342 5.342 10 C 0.302 3.698 11 O -0.377 6.377 12 C -0.088 4.088 13 N -0.298 5.298 14 C 0.105 3.895 15 H 0.053 0.947 16 C -0.230 4.230 17 C -0.532 4.532 18 H 0.083 0.917 19 C -0.145 4.145 20 N -0.539 5.539 21 Si 0.727 3.273 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.199 1.199 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.242 0.758 35 H 0.113 0.887 36 H 0.067 0.933 37 H 0.153 0.847 38 H 0.048 0.952 39 H 0.109 0.891 40 H 0.023 0.977 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.273 13.520 10.478 21.052 hybrid contribution -0.847 -0.385 0.153 0.943 sum 11.426 13.135 10.630 20.398 Atomic orbital electron populations 1.20805 0.90945 1.02107 1.03343 1.19999 0.96401 0.92185 0.98624 1.20897 0.94187 0.97063 1.01622 1.21089 0.94199 0.97920 1.00477 1.20855 0.99584 0.91568 1.01899 1.20008 0.92509 0.96039 1.00436 1.20737 0.99848 0.94348 1.02129 1.17246 0.89708 0.85542 1.02393 1.43554 1.49007 1.19760 1.21873 1.21243 0.79272 0.87627 0.81648 1.90701 1.63519 1.52284 1.31202 1.21794 0.97173 0.94540 0.95337 1.60593 1.33536 1.07225 1.28496 1.19229 0.87494 0.86028 0.96778 0.94738 1.22457 1.02616 1.02546 0.95359 1.21155 1.30446 1.09673 0.91963 0.91750 1.24941 0.95814 0.96491 0.97295 1.69877 1.35615 1.18096 1.30343 0.86479 0.77288 0.78724 0.84801 1.20749 1.21431 1.19854 0.90046 0.91822 0.91815 0.85947 0.86069 0.85962 0.91211 0.91175 0.91413 0.75805 0.88685 0.93262 0.84679 0.95154 0.89065 0.97692 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 8.59 36.01 0.31 -1.12 16 2 C -0.07 -0.91 5.59 -104.43 -0.58 -1.50 16 3 C -0.12 -1.33 9.67 -39.61 -0.38 -1.72 16 4 C -0.12 -1.20 10.04 -39.55 -0.40 -1.60 16 5 C -0.12 -1.26 9.70 -39.61 -0.38 -1.64 16 6 C -0.09 -1.03 5.90 -104.43 -0.62 -1.65 16 7 C -0.11 -1.10 9.77 36.01 0.35 -0.75 16 8 C 0.14 1.89 5.53 -83.69 -0.46 1.43 16 9 N -0.69 -8.69 3.63 -9.86 -0.04 -8.72 16 10 C 0.51 8.38 6.71 -10.99 -0.07 8.30 16 11 O -0.51 -10.22 14.63 5.55 0.08 -10.14 16 12 C 0.04 0.76 5.97 -4.98 -0.03 0.73 16 13 N -0.67 -14.55 5.86 -109.22 -0.64 -15.19 16 14 C 0.21 5.27 2.57 -68.87 -0.18 5.10 16 15 H 0.03 0.92 7.80 -51.92 -0.41 0.51 16 16 C -0.17 -4.02 8.94 37.16 0.33 -3.69 16 17 C -0.49 -13.81 8.84 -34.44 -0.30 -14.11 16 18 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 19 C 0.05 1.53 5.30 -17.82 -0.09 1.43 16 20 N -0.90 -25.54 11.32 55.43 0.63 -24.91 16 21 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 25 H 0.08 1.20 7.17 -51.93 -0.37 0.83 16 26 H 0.06 0.77 7.55 -51.93 -0.39 0.38 16 27 H 0.06 0.65 8.04 -51.93 -0.42 0.23 16 28 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 29 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 30 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.77 7.46 -51.93 -0.39 0.38 16 33 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 34 H 0.41 3.85 8.83 -40.82 -0.36 3.49 16 35 H 0.10 1.53 8.06 -51.93 -0.42 1.11 16 36 H 0.05 0.77 7.43 -51.93 -0.39 0.38 16 37 H 0.34 7.33 8.17 -39.29 -0.32 7.01 16 38 H 0.03 0.69 8.13 -51.93 -0.42 0.27 16 39 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 40 H 0.00 0.09 7.45 -51.92 -0.39 -0.30 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 338.10 15.07 5.10 5.10 Total: -1.00 -31.79 338.10 -8.65 -40.43 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.24 Total: 7.52 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -2.51 Total: -10.79 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.05 Total: -48.83 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.14 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.79 -8.65 -40.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068615035.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.874 kcal (2) G-P(sol) polarization free energy of solvation -31.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds