Wall clock time and date at job start Mon Mar 30 2020 01:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38115 * 120.03416 * 2 1 4 4 C 1.38277 * 120.07090 * 179.72010 * 3 2 1 5 5 C 1.38286 * 120.14378 * 0.28312 * 4 3 2 6 6 C 1.38111 * 120.06780 * 359.94994 * 5 4 3 7 7 C 1.50700 * 120.03646 * 180.02562 * 6 5 4 8 8 C 1.38870 * 120.04009 * 180.21023 * 2 1 3 9 9 N 1.39932 * 120.06761 * 0.02562 * 8 2 1 10 10 C 1.34780 * 119.99813 * 64.54780 * 9 8 2 11 11 O 1.21288 * 120.00239 * 4.83337 * 10 9 8 12 12 C 1.50696 * 119.99632 * 184.83418 * 10 9 8 13 13 N 1.46900 * 109.47020 * 179.97438 * 12 10 9 14 14 C 1.46897 * 111.00239 * 180.02562 * 13 12 10 15 15 H 1.09008 * 109.46853 * 324.99888 * 14 13 12 16 16 C 1.52996 * 109.47524 * 84.99674 * 14 13 12 17 17 C 1.50700 * 109.47425 * 205.00046 * 14 13 12 18 18 H 1.07998 * 119.99847 * 359.97438 * 17 14 13 19 19 C 1.37878 * 120.00281 * 179.97438 * 17 14 13 20 20 N 1.31515 * 119.99967 * 0.02562 * 19 17 14 21 21 Si 1.86798 * 119.99979 * 179.97438 * 19 17 14 22 22 H 1.48505 * 109.47079 * 90.00273 * 21 19 17 23 23 H 1.48505 * 109.47172 * 210.00050 * 21 19 17 24 24 H 1.48499 * 109.47451 * 330.00459 * 21 19 17 25 25 H 1.09004 * 109.46822 * 96.71761 * 1 2 3 26 26 H 1.09006 * 109.46678 * 216.70845 * 1 2 3 27 27 H 1.08996 * 109.47215 * 336.71524 * 1 2 3 28 28 H 1.08001 * 119.96283 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.92924 * 180.25485 * 4 3 2 30 30 H 1.07995 * 119.96451 * 179.97438 * 5 4 3 31 31 H 1.08997 * 109.46879 * 90.00290 * 7 6 5 32 32 H 1.08999 * 109.47171 * 209.99929 * 7 6 5 33 33 H 1.09002 * 109.47125 * 330.00640 * 7 6 5 34 34 H 0.96993 * 120.00219 * 244.54188 * 9 8 2 35 35 H 1.09000 * 109.47410 * 299.99530 * 12 10 9 36 36 H 1.08999 * 109.47390 * 59.99914 * 12 10 9 37 37 H 1.00903 * 110.99740 * 303.94961 * 13 12 10 38 38 H 1.09001 * 109.47273 * 60.00188 * 16 14 13 39 39 H 1.08996 * 109.47654 * 180.02562 * 16 14 13 40 40 H 1.09008 * 109.47311 * 300.00474 * 16 14 13 41 41 H 0.97000 * 120.00086 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1957 0.0000 4 6 3.5811 1.1966 0.0058 5 6 4.2763 0.0012 0.0058 6 6 3.5909 -1.1979 0.0010 7 6 4.3493 -2.5002 0.0015 8 6 2.2022 -1.2022 -0.0044 9 7 1.5048 -2.4153 -0.0094 10 6 0.7345 -2.7454 -1.0650 11 8 0.7141 -2.0339 -2.0470 12 6 -0.1015 -3.9986 -1.0249 13 7 -0.8441 -4.1323 -2.2854 14 6 -1.6725 -5.3453 -2.2823 15 1 -1.1563 -6.1364 -1.7383 16 6 -3.0102 -5.0478 -1.6019 17 6 -1.9184 -5.7894 -3.7012 18 1 -1.5014 -5.2265 -4.5231 19 6 -2.6758 -6.9143 -3.9501 20 7 -3.1841 -7.5995 -2.9492 21 14 -2.9812 -7.4643 -5.7090 22 1 -1.9061 -8.3986 -6.1292 23 1 -4.2949 -8.1520 -5.7916 24 1 -2.9854 -6.2797 -6.6044 25 1 -0.3633 -0.1202 -1.0207 26 1 -0.3633 -0.8239 0.6143 27 1 -0.3633 0.9439 0.4062 28 1 1.6582 2.1310 0.0004 29 1 4.1193 2.1329 0.0100 30 1 5.3562 0.0053 0.0100 31 1 4.5281 -2.8160 1.0293 32 1 3.7650 -3.2610 -0.5160 33 1 5.3032 -2.3653 -0.5083 34 1 1.5758 -3.0187 0.7467 35 1 0.5474 -4.8642 -0.8917 36 1 -0.8045 -3.9401 -0.1940 37 1 -1.4047 -3.3124 -2.4634 38 1 -3.5264 -4.2567 -2.1458 39 1 -3.6247 -5.9479 -1.5992 40 1 -2.8323 -4.7265 -0.5755 41 1 -3.7173 -8.3907 -3.1243 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068615035.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:29 Heat of formation + Delta-G solvation = -34.686865 kcal Electronic energy + Delta-G solvation = -21138.253449 eV Core-core repulsion = 18016.849635 eV Total energy + Delta-G solvation = -3121.403815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.62389 -39.68055 -37.52863 -35.71731 -34.51420 -34.43896 -31.94810 -30.80140 -28.34413 -27.53801 -27.25736 -26.44003 -23.02472 -22.09104 -21.89916 -21.25576 -18.98057 -18.29448 -17.77409 -17.15335 -16.61845 -16.38915 -16.09022 -15.55592 -15.17828 -14.82745 -14.77012 -14.49153 -14.29095 -14.04582 -13.86041 -13.62302 -13.55148 -13.22739 -12.86897 -12.84220 -12.73785 -12.50564 -12.41944 -12.17708 -12.16368 -12.12851 -11.95279 -11.20680 -10.90069 -10.60317 -10.47781 -9.49017 -9.35933 -8.99579 -8.10520 -6.20444 0.31780 0.42949 1.43085 1.43730 1.54927 1.61599 2.09174 2.45423 2.78850 3.18125 3.67912 3.80928 3.87059 3.92897 4.10181 4.39023 4.40815 4.44114 4.45868 4.58060 4.61184 4.69388 4.74733 4.78875 4.86824 4.89383 4.92366 5.06958 5.13800 5.30935 5.37141 5.46195 5.52388 5.63040 5.66365 5.69772 5.80423 6.13337 6.24312 6.41613 6.61338 6.75086 6.92025 7.26869 7.49124 8.94942 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.031944 B = 0.003486 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.326768 B = 8029.811825 C = 8249.359298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.093 4.093 3 C -0.128 4.128 4 C -0.116 4.116 5 C -0.124 4.124 6 C -0.099 4.099 7 C -0.112 4.112 8 C 0.114 3.886 9 N -0.669 5.669 10 C 0.522 3.478 11 O -0.550 6.550 12 C 0.046 3.954 13 N -0.680 5.680 14 C 0.218 3.782 15 H 0.016 0.984 16 C -0.158 4.158 17 C -0.519 4.519 18 H 0.048 0.952 19 C 0.013 3.987 20 N -0.919 5.919 21 Si 0.958 3.042 22 H -0.277 1.277 23 H -0.280 1.280 24 H -0.274 1.274 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.140 0.860 29 H 0.151 0.849 30 H 0.149 0.851 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.421 0.579 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.333 0.667 38 H 0.027 0.973 39 H 0.065 0.935 40 H 0.033 0.967 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.264 14.393 12.411 23.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.134 4.134 5 C -0.142 4.142 6 C -0.101 4.101 7 C -0.168 4.168 8 C 0.022 3.978 9 N -0.320 5.320 10 C 0.310 3.690 11 O -0.426 6.426 12 C -0.087 4.087 13 N -0.311 5.311 14 C 0.110 3.890 15 H 0.034 0.966 16 C -0.217 4.217 17 C -0.557 4.557 18 H 0.066 0.934 19 C -0.185 4.185 20 N -0.559 5.559 21 Si 0.784 3.216 22 H -0.202 1.202 23 H -0.206 1.206 24 H -0.199 1.199 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.102 0.898 28 H 0.158 0.842 29 H 0.169 0.831 30 H 0.166 0.834 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.260 0.740 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.151 0.849 38 H 0.046 0.954 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.623 14.399 11.401 22.867 hybrid contribution -1.168 -0.587 -0.043 1.308 sum 12.455 13.812 11.357 21.792 Atomic orbital electron populations 1.20732 0.91182 1.03156 1.01607 1.20212 0.96594 0.93004 0.99647 1.21203 0.95038 0.97170 1.01262 1.21489 0.93927 0.99192 0.98791 1.21234 1.01003 0.91133 1.00876 1.20304 0.92095 0.97509 1.00149 1.20761 0.99751 0.92972 1.03348 1.17515 0.90584 0.85417 1.04316 1.43221 1.47594 1.20001 1.21178 1.20983 0.79330 0.86818 0.81824 1.90685 1.65221 1.53545 1.33103 1.21823 0.97409 0.95533 0.93895 1.60402 1.33067 1.05993 1.31667 1.18988 0.88263 0.86681 0.95064 0.96641 1.22258 1.01347 1.01188 0.96920 1.21427 1.30961 1.10181 0.93161 0.93417 1.25632 0.95506 0.96480 1.00924 1.69976 1.35750 1.18272 1.31893 0.85563 0.77442 0.78185 0.80443 1.20230 1.20580 1.19917 0.92871 0.92045 0.89779 0.84175 0.83140 0.83378 0.89176 0.92853 0.90277 0.74049 0.87740 0.91102 0.84950 0.95392 0.91598 0.94850 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.72 8.59 71.24 0.61 -2.11 16 2 C -0.09 -2.34 5.59 -19.74 -0.11 -2.45 16 3 C -0.13 -2.65 9.67 22.25 0.22 -2.44 16 4 C -0.12 -2.04 10.04 22.29 0.22 -1.81 16 5 C -0.12 -2.26 9.70 22.25 0.22 -2.05 16 6 C -0.10 -2.16 5.90 -19.74 -0.12 -2.27 16 7 C -0.11 -1.96 9.77 71.24 0.70 -1.26 16 8 C 0.11 2.90 5.53 38.15 0.21 3.11 16 9 N -0.67 -16.42 3.63 -303.50 -1.10 -17.52 16 10 C 0.52 17.02 6.71 87.66 0.59 17.61 16 11 O -0.55 -22.74 14.63 -3.05 -0.04 -22.79 16 12 C 0.05 1.55 5.97 85.56 0.51 2.06 16 13 N -0.68 -30.03 5.86 -499.47 -2.93 -32.96 16 14 C 0.22 10.98 2.57 44.17 0.11 11.09 16 15 H 0.02 0.84 7.80 -2.38 -0.02 0.82 16 16 C -0.16 -7.43 8.94 71.98 0.64 -6.78 16 17 C -0.52 -29.50 8.84 25.60 0.23 -29.28 16 18 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 19 C 0.01 0.73 5.30 84.65 0.45 1.18 16 20 N -0.92 -52.42 11.32 21.45 0.24 -52.18 16 21 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 25 H 0.05 1.62 7.17 -2.38 -0.02 1.60 16 26 H 0.06 1.48 7.55 -2.38 -0.02 1.46 16 27 H 0.08 1.64 8.04 -2.39 -0.02 1.62 16 28 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 29 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 30 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.05 1.11 7.46 -2.39 -0.02 1.09 16 33 H 0.08 1.19 8.09 -2.39 -0.02 1.18 16 34 H 0.42 7.50 8.83 -92.71 -0.82 6.68 16 35 H 0.10 3.31 8.06 -2.39 -0.02 3.29 16 36 H 0.07 2.10 7.43 -2.39 -0.02 2.08 16 37 H 0.33 14.85 8.17 -89.69 -0.73 14.12 16 38 H 0.03 1.28 8.13 -2.39 -0.02 1.26 16 39 H 0.07 3.46 6.07 -2.39 -0.01 3.44 16 40 H 0.03 1.33 7.45 -2.38 -0.02 1.31 16 41 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -69.05 338.10 2.16 -66.88 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: -0.51 Total: 27.22 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 4.48 Total: -15.41 kcal Atomic # 7 Polarization: -98.87 SS G_CDS: -3.78 Total: -102.66 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.04 Total: -22.79 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -69.05 2.16 -66.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068615035.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.196 kcal (2) G-P(sol) polarization free energy of solvation -69.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds