Wall clock time and date at job start Mon Mar 30 2020 02:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46953 * 2 1 4 4 C 1.50698 * 109.47410 * 120.00238 * 2 1 3 5 5 C 1.38308 * 119.96307 * 299.96014 * 4 2 1 6 6 C 1.38254 * 120.14243 * 180.02562 * 5 4 2 7 7 C 1.38140 * 120.06855 * 0.03332 * 6 5 4 8 8 C 1.38846 * 119.92928 * 359.97438 * 7 6 5 9 9 N 1.39925 * 120.06884 * 180.02562 * 8 7 6 10 10 C 1.34783 * 119.99566 * 212.58597 * 9 8 7 11 11 O 1.21282 * 120.00327 * 5.23162 * 10 9 8 12 12 C 1.50698 * 119.99606 * 185.23902 * 10 9 8 13 13 N 1.46504 * 109.47136 * 179.97438 * 12 10 9 14 14 C 1.46500 * 119.99571 * 89.99692 * 13 12 10 15 15 C 1.36934 * 120.00047 * 270.00220 * 13 12 10 16 16 H 1.07999 * 119.99949 * 21.59528 * 15 13 12 17 17 C 1.38808 * 119.99614 * 201.59842 * 15 13 12 18 18 N 1.31618 * 120.00705 * 14.33548 * 17 15 13 19 19 Si 1.86807 * 119.99576 * 194.34078 * 17 15 13 20 20 H 1.48496 * 109.47106 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47267 * 120.00329 * 19 17 15 22 22 H 1.48506 * 109.46929 * 239.99496 * 19 17 15 23 23 C 1.38086 * 119.96492 * 119.99888 * 4 2 1 24 24 H 1.08996 * 109.47059 * 299.99405 * 1 2 3 25 25 H 1.08999 * 109.47362 * 59.99910 * 1 2 3 26 26 H 1.09004 * 109.46646 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47096 * 240.00071 * 2 1 3 28 28 H 1.08996 * 109.47384 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47160 * 300.00213 * 3 2 1 30 30 H 1.08999 * 109.47162 * 60.00111 * 3 2 1 31 31 H 1.08002 * 119.92717 * 0.03394 * 5 4 2 32 32 H 1.07995 * 119.96566 * 180.02562 * 6 5 4 33 33 H 1.08004 * 120.03087 * 180.02562 * 7 6 5 34 34 H 0.96997 * 120.00437 * 32.57782 * 9 8 7 35 35 H 1.09004 * 109.47064 * 299.99374 * 12 10 9 36 36 H 1.09003 * 109.47580 * 59.99531 * 12 10 9 37 37 H 1.09001 * 109.46698 * 94.51798 * 14 13 12 38 38 H 1.08997 * 109.46640 * 214.51288 * 14 13 12 39 39 H 1.08994 * 109.47455 * 334.51722 * 14 13 12 40 40 H 0.96993 * 120.00736 * 179.97438 * 18 17 15 41 41 H 1.07994 * 120.03732 * 0.25793 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6986 -0.2368 2.4862 6 6 2.1579 -0.8854 3.6175 7 6 2.9527 -2.0087 3.4967 8 6 3.2898 -2.4866 2.2373 9 7 4.0943 -3.6245 2.1115 10 6 4.9436 -3.7376 1.0710 11 8 5.0803 -2.8143 0.2967 12 6 5.7230 -5.0116 0.8698 13 7 6.5676 -4.8844 -0.3205 14 6 7.9298 -4.3589 -0.1993 15 6 6.0839 -5.2567 -1.5463 16 1 5.0181 -5.3079 -1.7134 17 6 6.9634 -5.5683 -2.5740 18 7 8.2349 -5.7825 -2.3100 19 14 6.3423 -5.6833 -4.3320 20 1 4.8846 -5.4014 -4.3615 21 1 7.0561 -4.6910 -5.1752 22 1 6.5925 -7.0498 -4.8569 23 6 2.8263 -1.8331 1.1028 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.0776 0.6415 2.5833 32 1 1.8951 -0.5134 4.5967 33 1 3.3109 -2.5152 4.3808 34 1 4.0409 -4.3319 2.7731 35 1 6.3497 -5.1958 1.7424 36 1 5.0315 -5.8436 0.7369 37 1 8.6312 -5.1873 -0.0998 38 1 8.1759 -3.7791 -1.0889 39 1 7.9955 -3.7194 0.6809 40 1 8.8494 -6.0006 -3.0281 41 1 3.0906 -2.1996 0.1219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972538.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:51 Heat of formation + Delta-G solvation = -13.225277 kcal Electronic energy + Delta-G solvation = -21254.581128 eV Core-core repulsion = 18134.107957 eV Total energy + Delta-G solvation = -3120.473171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.44209 -39.79620 -37.31317 -36.59951 -34.97541 -33.37480 -31.30588 -30.44086 -28.60029 -28.00970 -27.89095 -24.48433 -24.15515 -23.15760 -21.34334 -20.85529 -18.90289 -18.26708 -17.80301 -17.16201 -16.74802 -16.47218 -16.06726 -15.58084 -15.13656 -15.09102 -14.88333 -14.53615 -14.45886 -14.32685 -13.77199 -13.43626 -13.14130 -13.00728 -12.93030 -12.84845 -12.71844 -12.61302 -12.35373 -12.13267 -12.06868 -11.93484 -11.72548 -11.63063 -11.17837 -10.93965 -10.57604 -9.64359 -8.97055 -8.87970 -7.89840 -5.36337 0.38629 0.50748 1.40390 1.43664 1.53505 1.80370 2.17867 2.48951 2.91934 3.26417 3.62655 3.68668 3.90382 4.14481 4.17368 4.28925 4.31172 4.43101 4.51890 4.54486 4.63385 4.66290 4.75329 4.76506 4.78773 4.94244 4.95899 5.06564 5.23095 5.27401 5.28423 5.36555 5.46477 5.50424 5.54597 5.62826 5.64548 5.80383 6.18594 6.23009 6.60665 7.06978 7.36722 7.76869 8.18133 9.14464 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.019290 B = 0.004568 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.152291 B = 6127.589562 C = 7112.981045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.064 4.064 3 C -0.137 4.137 4 C -0.065 4.065 5 C -0.139 4.139 6 C -0.094 4.094 7 C -0.156 4.156 8 C 0.137 3.863 9 N -0.669 5.669 10 C 0.477 3.523 11 O -0.554 6.554 12 C 0.133 3.867 13 N -0.596 5.596 14 C 0.181 3.819 15 C -0.260 4.260 16 H 0.060 0.940 17 C -0.047 4.047 18 N -0.933 5.933 19 Si 0.965 3.035 20 H -0.274 1.274 21 H -0.292 1.292 22 H -0.281 1.281 23 C -0.156 4.156 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.146 0.854 32 H 0.159 0.841 33 H 0.151 0.849 34 H 0.425 0.575 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.021 0.979 38 H 0.008 0.992 39 H 0.021 0.979 40 H 0.251 0.749 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.260 9.556 14.303 22.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.082 4.082 3 C -0.194 4.194 4 C -0.066 4.066 5 C -0.157 4.157 6 C -0.112 4.112 7 C -0.177 4.177 8 C 0.043 3.957 9 N -0.317 5.317 10 C 0.264 3.736 11 O -0.430 6.430 12 C 0.002 3.998 13 N -0.316 5.316 14 C 0.036 3.964 15 C -0.390 4.390 16 H 0.078 0.922 17 C -0.242 4.242 18 N -0.579 5.579 19 Si 0.793 3.207 20 H -0.199 1.199 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.176 4.176 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.163 0.837 32 H 0.177 0.823 33 H 0.168 0.832 34 H 0.264 0.736 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.039 0.961 38 H 0.027 0.973 39 H 0.040 0.960 40 H 0.060 0.940 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.942 10.080 13.574 22.564 hybrid contribution 0.293 -0.538 -1.216 1.362 sum -14.650 9.541 12.357 21.409 Atomic orbital electron populations 1.21791 0.92370 1.01838 1.03139 1.20178 0.97406 0.96449 0.94198 1.21803 1.00140 0.94314 1.03184 1.19912 0.96125 0.94246 0.96310 1.21182 1.02081 1.01437 0.91037 1.21323 0.95994 0.94110 0.99790 1.21186 1.02537 0.98864 0.95069 1.18114 0.93253 0.89908 0.94465 1.43779 1.39094 1.20599 1.28240 1.23491 0.79054 0.91718 0.79357 1.90644 1.65325 1.41777 1.45216 1.20961 0.94799 0.92446 0.91585 1.43761 1.11923 1.72365 1.03557 1.20530 0.85088 0.94874 0.95860 1.19362 0.91559 1.38924 0.89123 0.92181 1.25653 0.96165 1.00221 1.02199 1.70207 1.03792 1.52238 1.31645 0.85245 0.77727 0.77169 0.80516 1.19906 1.21930 1.20755 1.21045 1.00027 0.98799 0.97766 0.90703 0.91300 0.93476 0.93212 0.94573 0.91171 0.90608 0.83658 0.82302 0.83156 0.73593 0.87582 0.88318 0.96102 0.97309 0.96011 0.94018 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.01 71.98 0.65 -1.84 16 2 C -0.06 -1.57 3.09 -11.54 -0.04 -1.60 16 3 C -0.14 -2.88 9.01 71.98 0.65 -2.24 16 4 C -0.07 -1.80 4.78 -19.88 -0.10 -1.89 16 5 C -0.14 -2.91 8.71 22.29 0.19 -2.72 16 6 C -0.09 -1.76 10.04 22.25 0.22 -1.53 16 7 C -0.16 -3.43 9.96 22.39 0.22 -3.20 16 8 C 0.14 4.12 6.29 38.15 0.24 4.36 16 9 N -0.67 -19.49 5.34 -303.50 -1.62 -21.11 16 10 C 0.48 18.79 7.64 87.66 0.67 19.46 16 11 O -0.55 -27.79 14.06 -3.04 -0.04 -27.83 16 12 C 0.13 5.19 6.13 85.63 0.52 5.72 16 13 N -0.60 -31.14 2.41 -731.31 -1.76 -32.90 16 14 C 0.18 9.52 8.98 127.77 1.15 10.66 16 15 C -0.26 -15.00 9.66 84.03 0.81 -14.18 16 16 H 0.06 3.47 7.87 -2.91 -0.02 3.44 16 17 C -0.05 -2.74 5.07 84.86 0.43 -2.31 16 18 N -0.93 -56.35 10.71 21.65 0.23 -56.12 16 19 Si 0.97 47.27 29.58 68.60 2.03 49.30 16 20 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 21 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 22 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 23 C -0.16 -5.39 8.29 22.39 0.19 -5.21 16 24 H 0.07 1.10 7.39 -2.39 -0.02 1.08 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 27 H 0.05 1.48 7.87 -2.39 -0.02 1.46 16 28 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 1.26 7.38 -2.39 -0.02 1.25 16 31 H 0.15 2.19 7.09 -2.91 -0.02 2.17 16 32 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 33 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 34 H 0.43 8.47 8.82 -92.71 -0.82 7.65 16 35 H 0.11 3.36 8.07 -2.38 -0.02 3.34 16 36 H 0.10 3.52 8.04 -2.39 -0.02 3.50 16 37 H 0.02 1.13 7.41 -2.39 -0.02 1.11 16 38 H 0.01 0.48 7.24 -2.39 -0.02 0.46 16 39 H 0.02 1.00 8.04 -2.39 -0.02 0.98 16 40 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 41 H 0.09 3.97 6.23 -2.91 -0.02 3.95 16 Total: -1.00 -76.28 338.52 4.85 -71.43 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.20 Total: 13.77 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 5.82 Total: 3.46 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -3.15 Total: -110.13 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.04 Total: -27.83 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -76.28 4.85 -71.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972538.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.204 kcal (2) G-P(sol) polarization free energy of solvation -76.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds