Wall clock time and date at job start Mon Mar 30 2020 01:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38305 * 119.96557 * 2 1 4 4 C 1.38260 * 120.15464 * 179.97438 * 3 2 1 5 5 C 1.38133 * 120.07334 * 0.03781 * 4 3 2 6 6 C 1.38888 * 119.92026 * 359.97438 * 5 4 3 7 7 N 1.39679 * 120.07219 * 179.97438 * 6 5 4 8 8 C 1.46505 * 119.99778 * 359.97438 * 7 6 5 9 9 H 1.09000 * 109.46957 * 34.99996 * 8 7 6 10 10 C 1.52993 * 109.47337 * 275.00297 * 8 7 6 11 11 C 1.50696 * 109.46926 * 154.99841 * 8 7 6 12 12 O 1.21286 * 119.99812 * 14.25371 * 11 8 7 13 13 N 1.34778 * 120.00289 * 194.24942 * 11 8 7 14 14 C 1.46504 * 119.99577 * 3.63817 * 13 11 8 15 15 C 1.46497 * 120.00213 * 183.63451 * 13 11 8 16 16 C 1.50706 * 109.47047 * 89.99975 * 15 13 11 17 17 H 1.07993 * 119.99624 * 0.02562 * 16 15 13 18 18 C 1.37869 * 119.99895 * 179.97438 * 16 15 13 19 19 N 1.31519 * 120.00434 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00036 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46840 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47379 * 120.00115 * 20 18 16 23 23 H 1.48500 * 109.46938 * 240.00205 * 20 18 16 24 24 C 1.38081 * 119.96048 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47044 * 90.00106 * 1 2 3 26 26 H 1.09000 * 109.47359 * 210.00029 * 1 2 3 27 27 H 1.08999 * 109.47465 * 330.00527 * 1 2 3 28 28 H 1.08002 * 119.92374 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.96798 * 180.02562 * 4 3 2 30 30 H 1.07997 * 120.03824 * 179.70193 * 5 4 3 31 31 H 0.96991 * 120.00181 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.47365 * 55.99252 * 10 8 7 33 33 H 1.08999 * 109.47204 * 176.00387 * 10 8 7 34 34 H 1.09009 * 109.47227 * 295.99344 * 10 8 7 35 35 H 1.08997 * 109.47130 * 84.66823 * 14 13 11 36 36 H 1.08999 * 109.46835 * 204.66677 * 14 13 11 37 37 H 1.08999 * 109.47001 * 324.66221 * 14 13 11 38 38 H 1.08996 * 109.46991 * 210.00170 * 15 13 11 39 39 H 1.09001 * 109.46947 * 330.00378 * 15 13 11 40 40 H 0.96999 * 120.00462 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.04166 * 359.95637 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5803 1.2027 0.0005 5 6 4.2765 0.0096 0.0003 6 6 3.5859 -1.1954 0.0000 7 7 4.2866 -2.4037 -0.0008 8 6 5.7517 -2.4008 -0.0019 9 1 6.1138 -1.5584 0.5874 10 6 6.2603 -2.2737 -1.4392 11 6 6.2569 -3.6876 0.5979 12 8 5.5012 -4.6241 0.7490 13 7 7.5486 -3.7979 0.9665 14 6 8.4424 -2.6421 0.8582 15 6 8.0589 -5.0733 1.4754 16 6 8.5778 -5.9006 0.3275 17 1 8.5325 -5.5147 -0.6800 18 6 9.1114 -7.1497 0.5640 19 7 9.1672 -7.6195 1.7912 20 14 9.7553 -8.1749 -0.8586 21 1 9.5794 -7.4253 -2.1283 22 1 11.1973 -8.4617 -0.6494 23 1 9.0017 -9.4525 -0.9290 24 6 2.1965 -1.1963 -0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.6559 2.1325 0.0004 29 1 4.1167 2.1401 0.0010 30 1 5.3564 0.0139 -0.0042 31 1 3.8033 -3.2446 -0.0013 32 1 5.8375 -1.3792 -1.8965 33 1 7.3478 -2.2002 -1.4346 34 1 5.9581 -3.1515 -2.0106 35 1 8.3443 -2.0222 1.7494 36 1 9.4725 -2.9867 0.7669 37 1 8.1755 -2.0576 -0.0223 38 1 8.8670 -4.8853 2.1822 39 1 7.2551 -5.6120 1.9772 40 1 9.5422 -8.4985 1.9575 41 1 1.6565 -2.1316 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070815276.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:50 Heat of formation + Delta-G solvation = -10.547752 kcal Electronic energy + Delta-G solvation = -21101.969905 eV Core-core repulsion = 17981.612840 eV Total energy + Delta-G solvation = -3120.357064 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.93066 -38.93578 -35.83754 -34.93765 -32.79031 -32.33370 -31.45743 -28.36842 -27.66965 -26.86558 -26.07303 -24.13992 -22.44705 -22.36975 -20.42782 -18.68282 -17.49259 -16.58848 -16.37436 -15.94570 -15.44111 -14.97836 -14.73792 -14.49432 -14.08470 -13.87898 -13.61794 -13.39841 -13.11937 -12.86015 -12.46791 -12.37391 -12.24526 -12.09496 -11.96652 -11.62390 -11.49061 -11.26658 -11.24129 -10.91987 -10.82832 -10.63957 -10.21373 -10.03000 -9.67362 -9.01603 -8.68786 -8.49086 -7.74851 -7.32230 -6.09634 -4.15026 1.45342 1.68225 3.22031 3.26194 3.32554 3.34698 3.40030 3.89664 4.00354 4.39691 4.81782 4.88456 4.90342 5.09925 5.21331 5.24887 5.25407 5.32719 5.43786 5.46445 5.50397 5.57127 5.75017 5.76297 5.79069 5.84810 5.95119 6.08488 6.10860 6.30612 6.38825 6.55727 6.70204 6.86933 6.98679 7.36025 7.41088 7.47136 7.86270 7.88179 8.16413 8.29458 8.80167 8.95577 9.50371 10.98489 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.034136 B = 0.003526 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.048913 B = 7939.742534 C = 8178.213325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.040 4.040 3 C -0.189 4.189 4 C -0.068 4.068 5 C -0.210 4.210 6 C 0.231 3.769 7 N -0.726 5.726 8 C 0.130 3.870 9 H 0.095 0.905 10 C -0.164 4.164 11 C 0.504 3.496 12 O -0.539 6.539 13 N -0.596 5.596 14 C 0.073 3.927 15 C 0.244 3.756 16 C -0.528 4.528 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.894 5.894 20 Si 0.899 3.101 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.282 1.282 24 C -0.199 4.199 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.410 0.590 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.034 0.966 39 H 0.045 0.955 40 H 0.263 0.737 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.688 17.899 -4.039 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.041 4.041 3 C -0.209 4.209 4 C -0.087 4.087 5 C -0.233 4.233 6 C 0.127 3.873 7 N -0.356 5.356 8 C 0.021 3.979 9 H 0.113 0.887 10 C -0.223 4.223 11 C 0.289 3.711 12 O -0.417 6.417 13 N -0.327 5.327 14 C -0.071 4.071 15 C 0.125 3.875 16 C -0.567 4.567 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.532 5.532 20 Si 0.726 3.274 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.208 1.208 24 C -0.222 4.222 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.131 0.869 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.247 0.753 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.781 17.212 -3.824 20.163 hybrid contribution 0.446 -0.969 -0.719 1.287 sum -9.335 16.242 -4.543 19.277 Atomic orbital electron populations 1.20792 0.91603 1.02558 1.02143 1.19589 0.95454 0.92617 0.96452 1.20696 0.94124 0.97007 1.09112 1.20827 0.94061 0.97092 0.96713 1.20666 0.99601 0.91223 1.11793 1.17826 0.90998 0.86174 0.92338 1.44579 1.04182 1.06042 1.80760 1.20774 0.81873 0.97691 0.97601 0.88737 1.22261 1.01809 1.03078 0.95150 1.20250 0.82944 0.88739 0.79192 1.90653 1.55513 1.40305 1.55211 1.48092 1.08216 1.13706 1.62729 1.21867 0.96191 0.88774 1.00292 1.19350 0.94988 0.78368 0.94796 1.21453 1.40054 1.01341 0.93834 0.92353 1.24946 0.95847 0.97439 0.95888 1.69942 1.45479 1.18578 1.19250 0.86432 0.78370 0.80245 0.82315 1.19787 1.20907 1.20842 1.20445 0.91908 0.98115 1.11737 0.91276 0.91651 0.91680 0.86860 0.86449 0.86201 0.75262 0.91477 0.90622 0.91564 0.93548 0.90258 0.91926 0.94799 0.93727 0.92696 0.86324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.00 0.36 -0.61 16 2 C -0.04 -0.46 5.88 -104.66 -0.62 -1.07 16 3 C -0.19 -2.05 9.70 -39.55 -0.38 -2.43 16 4 C -0.07 -0.75 10.04 -39.61 -0.40 -1.14 16 5 C -0.21 -2.58 8.85 -39.38 -0.35 -2.93 16 6 C 0.23 3.16 6.64 -83.78 -0.56 2.61 16 7 N -0.73 -10.90 5.19 -53.29 -0.28 -11.18 16 8 C 0.13 1.97 1.84 -69.08 -0.13 1.85 16 9 H 0.09 1.26 5.81 -51.93 -0.30 0.96 16 10 C -0.16 -2.20 9.16 37.15 0.34 -1.86 16 11 C 0.50 10.27 6.97 -10.99 -0.08 10.19 16 12 O -0.54 -13.25 15.42 5.55 0.09 -13.16 16 13 N -0.60 -12.33 2.86 -182.95 -0.52 -12.86 16 14 C 0.07 1.10 9.85 59.85 0.59 1.69 16 15 C 0.24 6.31 5.16 -5.19 -0.03 6.28 16 16 C -0.53 -14.75 9.39 -34.44 -0.32 -15.07 16 17 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 20 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 C -0.20 -2.55 9.55 -39.38 -0.38 -2.92 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 27 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 28 H 0.11 0.99 8.06 -52.49 -0.42 0.57 16 29 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.12 1.34 6.21 -52.49 -0.33 1.01 16 31 H 0.41 6.60 7.73 -40.82 -0.32 6.29 16 32 H 0.07 0.78 7.80 -51.93 -0.41 0.38 16 33 H 0.08 0.94 5.83 -51.93 -0.30 0.64 16 34 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 1.23 8.03 -51.93 -0.42 0.81 16 37 H 0.06 0.77 4.58 -51.93 -0.24 0.53 16 38 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 39 H 0.04 1.31 7.37 -51.93 -0.38 0.93 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 338.43 15.07 5.10 5.10 Total: -1.00 -32.32 338.43 -7.97 -40.29 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -6.03 Total: 4.64 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -2.04 Total: -3.80 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.06 Total: -49.67 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.09 Total: -13.16 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.32 -7.97 -40.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070815276.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.740 kcal (2) G-P(sol) polarization free energy of solvation -32.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds