Wall clock time and date at job start Mon Mar 30 2020 01:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38305 * 119.96557 * 2 1 4 4 C 1.38260 * 120.15464 * 179.97438 * 3 2 1 5 5 C 1.38133 * 120.07334 * 0.03781 * 4 3 2 6 6 C 1.38888 * 119.92026 * 359.97438 * 5 4 3 7 7 N 1.39679 * 120.07219 * 179.97438 * 6 5 4 8 8 C 1.46505 * 119.99778 * 359.97438 * 7 6 5 9 9 H 1.09000 * 109.46957 * 34.99996 * 8 7 6 10 10 C 1.52993 * 109.47337 * 275.00297 * 8 7 6 11 11 C 1.50696 * 109.46926 * 154.99841 * 8 7 6 12 12 O 1.21286 * 119.99812 * 14.25371 * 11 8 7 13 13 N 1.34778 * 120.00289 * 194.24942 * 11 8 7 14 14 C 1.46504 * 119.99577 * 3.63817 * 13 11 8 15 15 C 1.46497 * 120.00213 * 183.63451 * 13 11 8 16 16 C 1.50706 * 109.47047 * 89.99975 * 15 13 11 17 17 H 1.07993 * 119.99624 * 0.02562 * 16 15 13 18 18 C 1.37869 * 119.99895 * 179.97438 * 16 15 13 19 19 N 1.31519 * 120.00434 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00036 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46840 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47379 * 120.00115 * 20 18 16 23 23 H 1.48500 * 109.46938 * 240.00205 * 20 18 16 24 24 C 1.38081 * 119.96048 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47044 * 90.00106 * 1 2 3 26 26 H 1.09000 * 109.47359 * 210.00029 * 1 2 3 27 27 H 1.08999 * 109.47465 * 330.00527 * 1 2 3 28 28 H 1.08002 * 119.92374 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.96798 * 180.02562 * 4 3 2 30 30 H 1.07997 * 120.03824 * 179.70193 * 5 4 3 31 31 H 0.96991 * 120.00181 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.47365 * 55.99252 * 10 8 7 33 33 H 1.08999 * 109.47204 * 176.00387 * 10 8 7 34 34 H 1.09009 * 109.47227 * 295.99344 * 10 8 7 35 35 H 1.08997 * 109.47130 * 84.66823 * 14 13 11 36 36 H 1.08999 * 109.46835 * 204.66677 * 14 13 11 37 37 H 1.08999 * 109.47001 * 324.66221 * 14 13 11 38 38 H 1.08996 * 109.46991 * 210.00170 * 15 13 11 39 39 H 1.09001 * 109.46947 * 330.00378 * 15 13 11 40 40 H 0.96999 * 120.00462 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.04166 * 359.95637 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5803 1.2027 0.0005 5 6 4.2765 0.0096 0.0003 6 6 3.5859 -1.1954 0.0000 7 7 4.2866 -2.4037 -0.0008 8 6 5.7517 -2.4008 -0.0019 9 1 6.1138 -1.5584 0.5874 10 6 6.2603 -2.2737 -1.4392 11 6 6.2569 -3.6876 0.5979 12 8 5.5012 -4.6241 0.7490 13 7 7.5486 -3.7979 0.9665 14 6 8.4424 -2.6421 0.8582 15 6 8.0589 -5.0733 1.4754 16 6 8.5778 -5.9006 0.3275 17 1 8.5325 -5.5147 -0.6800 18 6 9.1114 -7.1497 0.5640 19 7 9.1672 -7.6195 1.7912 20 14 9.7553 -8.1749 -0.8586 21 1 9.5794 -7.4253 -2.1283 22 1 11.1973 -8.4617 -0.6494 23 1 9.0017 -9.4525 -0.9290 24 6 2.1965 -1.1963 -0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.6559 2.1325 0.0004 29 1 4.1167 2.1401 0.0010 30 1 5.3564 0.0139 -0.0042 31 1 3.8033 -3.2446 -0.0013 32 1 5.8375 -1.3792 -1.8965 33 1 7.3478 -2.2002 -1.4346 34 1 5.9581 -3.1515 -2.0106 35 1 8.3443 -2.0222 1.7494 36 1 9.4725 -2.9867 0.7669 37 1 8.1755 -2.0576 -0.0223 38 1 8.8670 -4.8853 2.1822 39 1 7.2551 -5.6120 1.9772 40 1 9.5422 -8.4985 1.9575 41 1 1.6565 -2.1316 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070815276.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:50 Heat of formation + Delta-G solvation = -30.708569 kcal Electronic energy + Delta-G solvation = -21102.844143 eV Core-core repulsion = 17981.612840 eV Total energy + Delta-G solvation = -3121.231303 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.24785 -40.10286 -37.04980 -36.60955 -34.79417 -33.22028 -32.60337 -29.87209 -29.05755 -27.65877 -27.51551 -25.81094 -24.00226 -23.25218 -21.51938 -20.07897 -18.73233 -18.70636 -17.64536 -17.19319 -16.69191 -16.48019 -16.29742 -15.80466 -15.37712 -14.79271 -14.75094 -14.51800 -14.28585 -14.14129 -13.85452 -13.63605 -13.51424 -13.31381 -13.21540 -12.97741 -12.90721 -12.71685 -12.60344 -12.45043 -12.23831 -12.10529 -11.72743 -11.68096 -11.01565 -10.67498 -10.63779 -9.55321 -9.48988 -8.33418 -8.25008 -6.40249 0.57978 0.77907 1.35521 1.37716 1.49373 1.66650 2.03835 2.36755 2.62811 3.02536 3.04886 3.50980 3.88913 4.06477 4.10964 4.12812 4.28858 4.38744 4.52863 4.61037 4.64021 4.67698 4.71157 4.78552 4.87827 4.93920 4.95401 5.02354 5.10176 5.19163 5.22247 5.30028 5.48904 5.51491 5.69710 5.77698 5.85045 6.01833 6.04273 6.39588 6.64833 6.70031 6.75815 7.21463 7.36315 8.82379 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.034136 B = 0.003526 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.048913 B = 7939.742534 C = 8178.213325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.048 4.048 3 C -0.191 4.191 4 C -0.069 4.069 5 C -0.218 4.218 6 C 0.210 3.790 7 N -0.737 5.737 8 C 0.147 3.853 9 H 0.121 0.879 10 C -0.157 4.157 11 C 0.493 3.507 12 O -0.593 6.593 13 N -0.602 5.602 14 C 0.065 3.935 15 C 0.258 3.742 16 C -0.542 4.542 17 H 0.056 0.944 18 C 0.007 3.993 19 N -0.929 5.929 20 Si 0.969 3.031 21 H -0.265 1.265 22 H -0.269 1.269 23 H -0.283 1.283 24 C -0.218 4.218 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.137 0.863 29 H 0.146 0.854 30 H 0.133 0.867 31 H 0.399 0.601 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.026 0.974 39 H -0.003 1.003 40 H 0.267 0.733 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.418 20.670 -5.484 23.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.049 4.049 3 C -0.211 4.211 4 C -0.088 4.088 5 C -0.241 4.241 6 C 0.107 3.893 7 N -0.367 5.367 8 C 0.038 3.962 9 H 0.139 0.861 10 C -0.216 4.216 11 C 0.281 3.719 12 O -0.475 6.475 13 N -0.333 5.333 14 C -0.076 4.076 15 C 0.136 3.864 16 C -0.580 4.580 17 H 0.075 0.925 18 C -0.192 4.192 19 N -0.569 5.569 20 Si 0.793 3.207 21 H -0.189 1.189 22 H -0.194 1.194 23 H -0.209 1.209 24 C -0.241 4.241 25 H 0.097 0.903 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.155 0.845 29 H 0.164 0.836 30 H 0.151 0.849 31 H 0.235 0.765 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.044 0.956 39 H 0.015 0.985 40 H 0.076 0.924 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.499 20.062 -5.277 22.816 hybrid contribution 0.282 -1.749 -0.214 1.784 sum -9.217 18.314 -5.491 21.225 Atomic orbital electron populations 1.20838 0.89827 1.03333 1.02993 1.19946 0.96945 0.92318 0.95702 1.21079 0.94498 0.97692 1.07785 1.21199 0.94339 0.97737 0.95481 1.20900 1.00393 0.91046 1.11726 1.18049 0.91394 0.86068 0.93757 1.44597 1.03967 1.06235 1.81929 1.20704 0.82167 0.94841 0.98496 0.86109 1.22242 1.02673 1.03147 0.93510 1.21272 0.82271 0.90158 0.78219 1.90618 1.56886 1.42750 1.57216 1.48092 1.09380 1.13490 1.62305 1.22198 0.94877 0.87249 1.03291 1.18813 0.92879 0.80565 0.94105 1.21722 1.40097 1.02102 0.94117 0.92526 1.25879 0.96013 0.98712 0.98628 1.70061 1.46256 1.19156 1.21398 0.85346 0.78204 0.78110 0.79016 1.18921 1.19388 1.20922 1.20621 0.92025 0.98812 1.12640 0.90297 0.91736 0.90089 0.84491 0.83642 0.84922 0.76519 0.89040 0.89253 0.93801 0.90816 0.90709 0.88445 0.95561 0.98527 0.92381 0.86803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 10.01 71.23 0.71 -1.00 16 2 C -0.05 -1.01 5.88 -19.89 -0.12 -1.13 16 3 C -0.19 -3.55 9.70 22.29 0.22 -3.33 16 4 C -0.07 -1.28 10.04 22.25 0.22 -1.06 16 5 C -0.22 -4.81 8.85 22.40 0.20 -4.61 16 6 C 0.21 5.56 6.64 38.21 0.25 5.82 16 7 N -0.74 -22.23 5.19 -322.51 -1.68 -23.90 16 8 C 0.15 4.30 1.84 44.24 0.08 4.38 16 9 H 0.12 2.88 5.81 -2.39 -0.01 2.87 16 10 C -0.16 -3.90 9.16 71.98 0.66 -3.24 16 11 C 0.49 20.51 6.97 87.66 0.61 21.12 16 12 O -0.59 -30.78 15.42 -3.05 -0.05 -30.83 16 13 N -0.60 -25.17 2.86 -851.13 -2.43 -27.60 16 14 C 0.07 1.86 9.85 127.77 1.26 3.12 16 15 C 0.26 13.88 5.16 85.64 0.44 14.33 16 16 C -0.54 -30.95 9.39 25.60 0.24 -30.71 16 17 H 0.06 3.18 7.81 -2.91 -0.02 3.15 16 18 C 0.01 0.38 5.46 84.65 0.46 0.84 16 19 N -0.93 -56.20 13.29 21.45 0.28 -55.91 16 20 Si 0.97 44.64 29.54 68.60 2.03 46.66 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 24 C -0.22 -5.51 9.55 22.40 0.21 -5.29 16 25 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 0.98 8.08 -2.39 -0.02 0.96 16 27 H 0.08 0.96 8.08 -2.39 -0.02 0.94 16 28 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 29 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 30 H 0.13 2.48 6.21 -2.91 -0.02 2.46 16 31 H 0.40 13.55 7.73 -92.71 -0.72 12.83 16 32 H 0.09 1.86 7.80 -2.39 -0.02 1.84 16 33 H 0.09 1.94 5.83 -2.39 -0.01 1.93 16 34 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.07 2.21 8.03 -2.39 -0.02 2.19 16 37 H 0.10 2.07 4.58 -2.39 -0.01 2.06 16 38 H 0.03 1.43 8.07 -2.39 -0.02 1.41 16 39 H 0.00 -0.21 7.37 -2.39 -0.02 -0.23 16 40 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 41 H 0.11 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -73.42 338.43 3.93 -69.50 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.31 Total: 22.85 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 5.46 Total: -0.77 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -3.82 Total: -107.41 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.05 Total: -30.83 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -73.42 3.93 -69.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070815276.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.790 kcal (2) G-P(sol) polarization free energy of solvation -73.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds