Wall clock time and date at job start Mon Mar 30 2020 02:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35455 * 125.56382 * 2 1 4 4 C 1.39836 * 107.86265 * 180.12772 * 3 2 1 5 5 C 1.50703 * 126.45717 * 179.83577 * 4 3 2 6 6 C 1.37874 * 107.08867 * 359.56949 * 4 3 2 7 7 C 1.46674 * 126.23543 * 180.24328 * 6 4 3 8 8 O 1.21692 * 119.99825 * 335.28097 * 7 6 4 9 9 N 1.34777 * 119.99601 * 155.27974 * 7 6 4 10 10 C 1.46498 * 120.00575 * 6.04950 * 9 7 6 11 11 C 1.50705 * 109.47050 * 94.55752 * 10 9 7 12 12 H 1.08000 * 119.99888 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99786 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99927 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99770 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47236 * 90.00058 * 15 13 11 17 17 H 1.48509 * 109.46837 * 209.99694 * 15 13 11 18 18 H 1.48494 * 109.47080 * 329.99615 * 15 13 11 19 19 C 1.46500 * 119.99604 * 186.04820 * 9 7 6 20 20 C 1.52998 * 109.47432 * 83.51479 * 19 9 7 21 21 C 1.52995 * 117.50306 * 247.13512 * 20 19 9 22 22 C 1.53003 * 117.50349 * 178.46974 * 20 19 9 23 23 N 1.35539 * 125.56537 * 179.64272 * 2 1 3 24 24 H 0.97001 * 125.67396 * 0.02562 * 23 2 1 25 25 H 1.08999 * 109.47043 * 270.36042 * 1 2 3 26 26 H 1.08998 * 109.46817 * 30.36198 * 1 2 3 27 27 H 1.09000 * 109.47313 * 150.35892 * 1 2 3 28 28 H 1.07997 * 126.06659 * 359.95790 * 3 2 1 29 29 H 1.09004 * 109.46668 * 269.68954 * 5 4 3 30 30 H 1.08997 * 109.47307 * 149.68808 * 5 4 3 31 31 H 1.08997 * 109.47069 * 29.67900 * 5 4 3 32 32 H 1.08992 * 109.47143 * 214.55918 * 10 9 7 33 33 H 1.09000 * 109.47015 * 334.55826 * 10 9 7 34 34 H 0.97002 * 119.99598 * 180.02562 * 14 13 11 35 35 H 1.08997 * 109.47213 * 203.51683 * 19 9 7 36 36 H 1.08998 * 109.47401 * 323.51681 * 19 9 7 37 37 H 1.09003 * 115.54473 * 32.80380 * 20 19 9 38 38 H 1.09006 * 117.49664 * 359.97438 * 21 20 19 39 39 H 1.09003 * 117.50169 * 145.01850 * 21 20 19 40 40 H 1.08995 * 117.50191 * 214.98297 * 22 20 19 41 41 H 1.08995 * 117.49514 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6270 0.6767 -0.0030 5 6 4.8486 1.5592 -0.0075 6 6 3.6123 -0.7019 0.0052 7 6 4.7860 -1.5815 0.0105 8 8 5.8471 -1.1829 -0.4324 9 7 4.6893 -2.8311 0.5061 10 6 3.3853 -3.3576 0.9166 11 6 2.7779 -4.1379 -0.2206 12 1 3.3103 -4.2326 -1.1556 13 6 1.5427 -4.7309 -0.0675 14 7 0.8947 -4.6160 1.0712 15 14 0.7902 -5.6987 -1.4769 16 1 1.2084 -7.1204 -1.3801 17 1 -0.6905 -5.6122 -1.4018 18 1 1.2542 -5.1331 -2.7691 19 6 5.8884 -3.6631 0.6341 20 6 6.6078 -3.3234 1.9409 21 6 7.9791 -2.6528 1.8389 22 6 7.8727 -4.1155 2.2777 23 7 2.2954 -1.1025 0.0069 24 1 1.9834 -2.0210 0.0123 25 1 -0.3633 0.0065 1.0276 26 1 -0.3633 0.8867 -0.5194 27 1 -0.3634 -0.8932 -0.5082 28 1 1.9545 2.1268 -0.0006 29 1 5.1436 1.7659 -1.0363 30 1 5.6640 1.0535 0.5097 31 1 4.6217 2.4964 0.5006 32 1 3.5128 -4.0118 1.7789 33 1 2.7269 -2.5305 1.1823 34 1 0.0258 -5.0336 1.1790 35 1 5.6020 -4.7147 0.6397 36 1 6.5545 -3.4724 -0.2074 37 1 5.9635 -3.0281 2.7691 38 1 8.3691 -2.4540 0.8406 39 1 8.2373 -1.9166 2.6001 40 1 8.0609 -4.3409 3.3273 41 1 8.1927 -4.8783 1.5679 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154948863.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:28 Heat of formation + Delta-G solvation = 17.155278 kcal Electronic energy + Delta-G solvation = -22150.149914 eV Core-core repulsion = 19030.994144 eV Total energy + Delta-G solvation = -3119.155771 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 3.31 seconds Orbital eigenvalues (eV) -42.40611 -40.23716 -38.15903 -36.73479 -34.59085 -33.54090 -32.38742 -29.85930 -28.72731 -28.33059 -26.38276 -24.91280 -23.21575 -22.38724 -21.26603 -21.07609 -19.78884 -18.80779 -18.21615 -17.42622 -16.76539 -16.46011 -16.05243 -15.82930 -15.41583 -14.77467 -14.65314 -14.43089 -14.18324 -13.87590 -13.83922 -13.62956 -13.50385 -13.22978 -13.04773 -12.91887 -12.83843 -12.63645 -12.52288 -12.36739 -12.29566 -12.18031 -11.84459 -11.35032 -10.98093 -10.82203 -10.69137 -9.65353 -9.50391 -8.81820 -8.34441 -6.54350 0.67495 1.34148 1.38127 1.46733 1.84115 2.14994 2.27133 2.33522 2.67076 2.92492 2.94443 3.81548 3.82112 4.00706 4.07152 4.12583 4.30295 4.36047 4.41255 4.62238 4.67285 4.71604 4.75128 4.79711 4.81022 4.89300 4.94855 4.99225 5.02677 5.09320 5.11834 5.23466 5.24514 5.25777 5.49614 5.57210 5.72262 5.84206 6.05403 6.20663 6.43674 6.67872 6.72325 7.16698 7.29920 8.68092 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.011134 B = 0.008822 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.263294 B = 3173.035143 C = 5179.301299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.031 3.969 3 C -0.216 4.216 4 C -0.106 4.106 5 C -0.070 4.070 6 C -0.085 4.085 7 C 0.581 3.419 8 O -0.573 6.573 9 N -0.598 5.598 10 C 0.231 3.769 11 C -0.563 4.563 12 H 0.051 0.949 13 C 0.033 3.967 14 N -0.904 5.904 15 Si 0.953 3.047 16 H -0.272 1.272 17 H -0.272 1.272 18 H -0.276 1.276 19 C 0.153 3.847 20 C -0.186 4.186 21 C -0.169 4.169 22 C -0.151 4.151 23 N -0.532 5.532 24 H 0.435 0.565 25 H 0.082 0.918 26 H 0.109 0.891 27 H 0.057 0.943 28 H 0.169 0.831 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.085 0.915 32 H 0.022 0.978 33 H 0.041 0.959 34 H 0.275 0.725 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.111 0.889 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.566 6.302 1.257 6.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.239 4.239 4 C -0.115 4.115 5 C -0.127 4.127 6 C -0.198 4.198 7 C 0.371 3.629 8 O -0.454 6.454 9 N -0.327 5.327 10 C 0.110 3.890 11 C -0.601 4.601 12 H 0.069 0.931 13 C -0.170 4.170 14 N -0.542 5.542 15 Si 0.778 3.222 16 H -0.198 1.198 17 H -0.197 1.197 18 H -0.201 1.201 19 C 0.031 3.969 20 C -0.206 4.206 21 C -0.206 4.206 22 C -0.189 4.189 23 N -0.136 5.136 24 H 0.284 0.716 25 H 0.101 0.899 26 H 0.128 0.872 27 H 0.076 0.924 28 H 0.186 0.814 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.130 0.870 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.909 6.191 1.142 6.934 hybrid contribution -0.689 -1.375 -0.527 1.626 sum 2.220 4.816 0.615 5.338 Atomic orbital electron populations 1.20476 0.85800 1.04126 1.03745 1.21318 0.95440 0.86465 1.05655 1.20754 0.90704 0.98726 1.13751 1.20223 0.96917 0.90535 1.03813 1.20134 0.92949 0.97633 1.01955 1.20321 0.83927 0.94622 1.20966 1.17371 0.86905 0.81245 0.77335 1.90658 1.29983 1.75433 1.49366 1.48061 1.09816 1.13153 1.61663 1.19551 0.79540 0.94545 0.95363 1.21622 1.03897 1.34939 0.99659 0.93094 1.25613 0.96907 0.96298 0.98157 1.69999 1.15182 1.43871 1.25111 0.85617 0.78002 0.79272 0.79313 1.19789 1.19650 1.20064 1.20898 0.85726 0.94423 0.95880 1.22593 0.91304 1.07895 0.98787 1.22972 0.98661 0.96225 1.02698 1.23034 0.98426 0.94247 1.03149 1.43563 1.05342 1.10772 1.53963 0.71608 0.89896 0.87210 0.92401 0.81392 0.91609 0.93389 0.89605 0.96039 0.94181 0.91587 0.90157 0.91480 0.89382 0.89380 0.88387 0.87037 0.87702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.25 10.41 71.24 0.74 -1.51 16 2 C 0.03 1.09 7.13 41.34 0.29 1.38 16 3 C -0.22 -7.13 10.66 22.01 0.23 -6.89 16 4 C -0.11 -4.05 6.20 -19.56 -0.12 -4.17 16 5 C -0.07 -2.26 9.71 71.24 0.69 -1.57 16 6 C -0.08 -3.77 6.47 40.35 0.26 -3.51 16 7 C 0.58 27.19 7.46 86.45 0.64 27.84 16 8 O -0.57 -27.61 15.17 -4.32 -0.07 -27.68 16 9 N -0.60 -27.11 2.47 -830.89 -2.05 -29.16 16 10 C 0.23 11.30 4.70 85.63 0.40 11.70 16 11 C -0.56 -28.73 7.96 25.60 0.20 -28.53 16 12 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 13 C 0.03 1.66 5.38 84.65 0.46 2.11 16 14 N -0.90 -46.37 13.29 21.45 0.28 -46.08 16 15 Si 0.95 40.02 29.54 68.60 2.03 42.04 16 16 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 17 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 18 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 19 C 0.15 6.04 5.69 86.38 0.49 6.53 16 20 C -0.19 -6.29 5.96 -10.79 -0.06 -6.36 16 21 C -0.17 -4.92 10.18 30.62 0.31 -4.61 16 22 C -0.15 -3.85 10.26 30.62 0.31 -3.54 16 23 N -0.53 -22.86 4.82 -171.93 -0.83 -23.68 16 24 H 0.43 20.22 4.68 -92.71 -0.43 19.79 16 25 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.17 4.22 8.06 -2.91 -0.02 4.19 16 29 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.05 1.71 7.21 -2.39 -0.02 1.70 16 31 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.02 1.11 8.11 -2.39 -0.02 1.09 16 33 H 0.04 2.04 4.47 -2.39 -0.01 2.03 16 34 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 35 H 0.08 3.12 8.02 -2.39 -0.02 3.10 16 36 H 0.07 2.67 7.29 -2.39 -0.02 2.65 16 37 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 38 H 0.09 2.71 8.04 -2.38 -0.02 2.70 16 39 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -59.33 340.03 4.82 -54.51 By element: Atomic # 1 Polarization: 40.59 SS G_CDS: 0.59 Total: 41.19 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 4.86 Total: -11.13 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -2.60 Total: -98.93 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.07 Total: -27.68 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.04 kcal Total: -59.33 4.82 -54.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154948863.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.667 kcal (2) G-P(sol) polarization free energy of solvation -59.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.31 seconds