Wall clock time and date at job start Mon Mar 30 2020 01:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35478 * 125.55747 * 2 1 4 4 C 1.39812 * 107.87836 * 179.97438 * 3 2 1 5 5 C 1.37988 * 107.08192 * 359.97438 * 4 3 2 6 6 C 1.46554 * 126.24073 * 180.02562 * 5 4 3 7 7 O 1.21738 * 119.99824 * 136.69770 * 6 5 4 8 8 N 1.34776 * 119.99786 * 316.69883 * 6 5 4 9 9 C 1.36875 * 119.99936 * 178.30478 * 8 6 5 10 10 H 1.08002 * 119.99964 * 224.59520 * 9 8 6 11 11 C 1.39012 * 119.99967 * 44.59345 * 9 8 6 12 12 N 1.31395 * 119.99742 * 25.42361 * 11 9 8 13 13 Si 1.86798 * 120.00188 * 205.41781 * 11 9 8 14 14 H 1.48508 * 109.46933 * 94.99206 * 13 11 9 15 15 H 1.48490 * 109.47464 * 214.99311 * 13 11 9 16 16 H 1.48500 * 109.46872 * 334.99821 * 13 11 9 17 17 C 1.46494 * 119.99898 * 358.30805 * 8 6 5 18 18 C 1.54274 * 110.03394 * 236.46936 * 17 8 6 19 19 C 1.54966 * 104.16172 * 217.14038 * 18 17 8 20 20 C 1.54889 * 102.77773 * 37.87980 * 19 18 17 21 21 C 1.53873 * 110.03636 * 119.25259 * 17 8 6 22 22 N 1.35582 * 125.55663 * 179.68627 * 2 1 3 23 23 C 1.46499 * 125.68432 * 359.97438 * 22 2 1 24 24 H 1.09004 * 109.46821 * 90.02216 * 1 2 3 25 25 H 1.09004 * 109.47228 * 330.02985 * 1 2 3 26 26 H 1.08999 * 109.47434 * 210.02494 * 1 2 3 27 27 H 1.08006 * 126.06557 * 359.97438 * 3 2 1 28 28 H 1.07992 * 126.45695 * 179.97438 * 4 3 2 29 29 H 0.97002 * 119.99839 * 184.95680 * 12 11 9 30 30 H 1.09004 * 110.02101 * 357.85580 * 17 8 6 31 31 H 1.08998 * 110.47771 * 335.78151 * 18 17 8 32 32 H 1.08995 * 110.48877 * 98.42535 * 18 17 8 33 33 H 1.09001 * 110.71404 * 279.56756 * 19 18 17 34 34 H 1.08997 * 110.92145 * 156.29465 * 19 18 17 35 35 H 1.08994 * 110.48461 * 203.40290 * 20 19 18 36 36 H 1.09007 * 110.59342 * 80.82141 * 20 19 18 37 37 H 1.09005 * 110.03265 * 238.57224 * 21 17 8 38 38 H 1.09001 * 110.03034 * 359.94611 * 21 17 8 39 39 H 1.08998 * 109.47731 * 128.68092 * 23 22 2 40 40 H 1.09006 * 109.47103 * 248.68333 * 23 22 2 41 41 H 1.09002 * 109.47279 * 8.67948 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2949 1.1022 0.0000 4 6 3.6270 0.6776 0.0006 5 6 3.6126 -0.7022 0.0015 6 6 4.7855 -1.5809 0.0029 7 8 4.8122 -2.5594 0.7267 8 7 5.8347 -1.3056 -0.7971 9 6 6.9443 -2.1065 -0.7704 10 1 7.9293 -1.6641 -0.7530 11 6 6.8033 -3.4895 -0.7659 12 7 5.7243 -4.0415 -1.2733 13 14 8.1479 -4.5630 -0.0386 14 1 7.8185 -4.8796 1.3745 15 1 8.2506 -5.8232 -0.8172 16 1 9.4435 -3.8395 -0.0946 17 6 5.7874 -0.1491 -1.6950 18 6 6.0258 -0.6004 -3.1509 19 6 6.8683 0.5439 -3.7693 20 6 7.8062 0.9468 -2.6044 21 6 6.9186 0.8345 -1.3478 22 7 2.2955 -1.1030 0.0060 23 6 1.8244 -2.4901 0.0142 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3634 0.8903 0.5134 26 1 -0.3634 -0.8897 0.5142 27 1 1.9544 2.1271 -0.0004 28 1 4.5022 1.3103 0.0004 29 1 5.5925 -5.0002 -1.2059 30 1 4.8212 0.3486 -1.6120 31 1 6.5813 -1.5379 -3.1734 32 1 5.0776 -0.7049 -3.6781 33 1 6.2306 1.3792 -4.0585 34 1 7.4440 0.1858 -4.6228 35 1 8.1568 1.9707 -2.7337 36 1 8.6509 0.2610 -2.5375 37 1 6.5014 1.8098 -1.0969 38 1 7.5022 0.4518 -0.5105 39 1 2.3153 -3.0454 -0.7850 40 1 2.0616 -2.9488 0.9741 41 1 0.7455 -2.5084 -0.1404 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265673692.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:43 Heat of formation + Delta-G solvation = -1.892782 kcal Electronic energy + Delta-G solvation = -22729.670776 eV Core-core repulsion = 19609.689019 eV Total energy + Delta-G solvation = -3119.981757 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.27632 -40.18688 -38.22754 -35.24340 -34.03585 -33.37612 -32.31087 -29.43026 -28.59663 -28.03934 -27.33255 -25.89655 -22.74341 -21.63076 -21.15231 -21.03392 -19.95519 -18.66584 -17.70850 -16.80921 -16.74410 -16.29846 -15.94826 -15.75907 -15.39507 -14.95716 -14.48273 -14.22791 -14.06959 -13.99933 -13.76267 -13.40747 -13.36727 -13.08120 -12.91129 -12.84471 -12.58931 -12.49777 -12.44956 -12.24960 -12.07136 -11.83246 -11.78287 -11.34011 -11.28875 -10.71872 -10.21306 -9.53171 -9.16386 -8.73777 -8.23938 -5.97338 0.94530 1.34145 1.43388 1.46888 1.84957 1.99845 2.35517 2.70131 3.19048 3.25868 3.90679 3.91198 3.95336 4.01364 4.13184 4.28336 4.37985 4.42990 4.54589 4.66297 4.68388 4.74995 4.79321 4.84965 4.86820 4.89319 4.96440 5.12087 5.13148 5.19926 5.28778 5.30387 5.39628 5.44114 5.57190 5.58584 5.68377 6.06506 6.18354 6.25982 6.52249 7.01027 7.19682 7.65645 8.30352 8.81854 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.015004 B = 0.008323 C = 0.005974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.758399 B = 3363.452200 C = 4686.055426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.019 3.981 3 C -0.211 4.211 4 C -0.164 4.164 5 C -0.054 4.054 6 C 0.524 3.476 7 O -0.603 6.603 8 N -0.435 5.435 9 C -0.347 4.347 10 H 0.081 0.919 11 C 0.034 3.966 12 N -0.862 5.862 13 Si 0.954 3.046 14 H -0.296 1.296 15 H -0.281 1.281 16 H -0.253 1.253 17 C 0.109 3.891 18 C -0.123 4.123 19 C -0.109 4.109 20 C -0.111 4.111 21 C -0.126 4.126 22 N -0.424 5.424 23 C 0.083 3.917 24 H 0.085 0.915 25 H 0.102 0.898 26 H 0.070 0.930 27 H 0.169 0.831 28 H 0.146 0.854 29 H 0.257 0.743 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.050 0.950 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.348 11.641 -2.988 14.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 C -0.235 4.235 4 C -0.190 4.190 5 C -0.168 4.168 6 C 0.313 3.687 7 O -0.487 6.487 8 N -0.154 5.154 9 C -0.474 4.474 10 H 0.099 0.901 11 C -0.172 4.172 12 N -0.498 5.498 13 Si 0.779 3.221 14 H -0.223 1.223 15 H -0.207 1.207 16 H -0.176 1.176 17 C 0.005 3.995 18 C -0.162 4.162 19 C -0.147 4.147 20 C -0.149 4.149 21 C -0.164 4.164 22 N -0.099 5.099 23 C -0.058 4.058 24 H 0.103 0.897 25 H 0.121 0.879 26 H 0.089 0.911 27 H 0.186 0.814 28 H 0.164 0.836 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.473 10.601 -2.758 13.260 hybrid contribution 0.798 -1.468 0.550 1.759 sum -6.675 9.133 -2.208 11.525 Atomic orbital electron populations 1.20469 0.84824 1.04507 1.03804 1.21258 0.95495 0.85053 1.07840 1.20862 0.91317 0.98788 1.12515 1.21441 0.98873 0.91035 1.07637 1.20616 0.84625 0.94891 1.16650 1.17520 0.84120 0.85208 0.81832 1.90573 1.82109 1.31225 1.44810 1.43302 1.14569 1.25217 1.32263 1.19002 0.86455 0.87460 1.54459 0.90107 1.25905 0.98507 0.98824 0.94011 1.70038 1.30473 1.11305 1.37937 0.85547 0.80166 0.78465 0.77874 1.22294 1.20696 1.17642 1.22366 1.00085 0.87362 0.89669 1.22548 0.99132 0.99426 0.95072 1.22407 0.97572 0.97254 0.97419 1.22241 0.97307 1.01610 0.93733 1.22423 0.96781 0.98566 0.98678 1.44014 1.04757 1.07129 1.54024 1.21942 1.01903 0.79503 1.02496 0.89683 0.87899 0.91133 0.81351 0.83629 0.93333 0.88742 0.93274 0.93732 0.89782 0.91157 0.89301 0.93116 0.89829 0.93370 0.93018 0.92118 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 9.85 71.24 0.70 -0.78 16 2 C 0.02 0.56 6.87 41.34 0.28 0.85 16 3 C -0.21 -6.40 10.71 22.01 0.24 -6.16 16 4 C -0.16 -6.13 8.39 22.59 0.19 -5.94 16 5 C -0.05 -2.45 6.01 40.34 0.24 -2.21 16 6 C 0.52 28.95 6.70 86.41 0.58 29.53 16 7 O -0.60 -38.30 14.61 -4.47 -0.07 -38.36 16 8 N -0.43 -22.75 2.42 -613.96 -1.49 -24.24 16 9 C -0.35 -19.52 7.26 84.09 0.61 -18.91 16 10 H 0.08 4.42 7.32 -2.91 -0.02 4.40 16 11 C 0.03 2.00 4.13 84.94 0.35 2.36 16 12 N -0.86 -52.75 12.28 21.68 0.27 -52.48 16 13 Si 0.95 46.82 29.63 68.60 2.03 48.85 16 14 H -0.30 -15.27 7.11 99.48 0.71 -14.57 16 15 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 16 H -0.25 -11.45 7.11 99.48 0.71 -10.75 16 17 C 0.11 4.51 2.61 45.72 0.12 4.63 16 18 C -0.12 -4.94 6.41 31.70 0.20 -4.73 16 19 C -0.11 -3.18 6.91 31.91 0.22 -2.96 16 20 C -0.11 -3.25 6.83 31.67 0.22 -3.03 16 21 C -0.13 -4.35 5.99 31.32 0.19 -4.16 16 22 N -0.42 -16.56 3.16 -519.64 -1.64 -18.20 16 23 C 0.08 2.99 10.38 127.77 1.33 4.32 16 24 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 25 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.07 1.21 7.17 -2.39 -0.02 1.19 16 27 H 0.17 3.77 8.06 -2.91 -0.02 3.74 16 28 H 0.15 5.02 6.87 -2.91 -0.02 5.00 16 29 H 0.26 15.25 8.32 -92.71 -0.77 14.48 16 30 H 0.09 3.79 4.30 -2.38 -0.01 3.78 16 31 H 0.05 2.37 6.98 -2.39 -0.02 2.35 16 32 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.08 2.36 7.93 -2.38 -0.02 2.34 16 38 H 0.05 1.90 7.05 -2.39 -0.02 1.88 16 39 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 41 H 0.12 3.11 6.74 -2.39 -0.02 3.10 16 Total: -1.00 -76.33 326.47 5.58 -70.74 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 1.01 Total: 20.89 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 5.47 Total: -7.20 kcal Atomic # 7 Polarization: -92.06 SS G_CDS: -2.86 Total: -94.92 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -0.07 Total: -38.36 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -76.33 5.58 -70.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265673692.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.849 kcal (2) G-P(sol) polarization free energy of solvation -76.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds