Wall clock time and date at job start Mon Mar 30 2020 01:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38215 * 119.62061 * 2 1 4 4 C 1.38628 * 119.16579 * 180.02562 * 3 2 1 5 5 C 1.38677 * 118.41857 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.41881 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47098 * 89.99960 * 6 5 4 8 8 C 1.52993 * 109.47066 * 179.97438 * 7 6 5 9 9 N 1.46906 * 109.47178 * 180.02562 * 8 7 6 10 10 C 1.47477 * 110.99943 * 265.97390 * 9 8 7 11 11 C 1.53510 * 87.93305 * 221.29527 * 10 9 8 12 12 O 1.42898 * 114.17195 * 272.37862 * 11 10 9 13 13 C 1.50703 * 114.34809 * 139.68447 * 11 10 9 14 14 H 1.07996 * 119.99962 * 266.08442 * 13 11 10 15 15 C 1.37877 * 119.99831 * 86.07274 * 13 11 10 16 16 N 1.31517 * 119.99747 * 180.02562 * 15 13 11 17 17 Si 1.86800 * 120.00050 * 0.02562 * 15 13 11 18 18 H 1.48491 * 109.47204 * 89.99613 * 17 15 13 19 19 H 1.48500 * 109.46701 * 209.99925 * 17 15 13 20 20 H 1.48497 * 109.47176 * 329.99194 * 17 15 13 21 21 C 1.47483 * 111.00084 * 170.00086 * 9 8 7 22 22 C 1.38184 * 119.16194 * 0.02562 * 5 4 3 23 23 N 1.31854 * 119.61606 * 180.02562 * 2 1 3 24 24 H 1.08993 * 109.47293 * 269.97518 * 1 2 3 25 25 H 1.09001 * 109.46879 * 29.98061 * 1 2 3 26 26 H 1.09006 * 109.47370 * 149.97248 * 1 2 3 27 27 H 1.08004 * 120.42025 * 359.97438 * 3 2 1 28 28 H 1.08003 * 120.79538 * 180.02562 * 4 3 2 29 29 H 1.09008 * 109.46574 * 210.00166 * 6 5 4 30 30 H 1.08994 * 109.46982 * 329.99952 * 6 5 4 31 31 H 1.08993 * 109.47281 * 299.99960 * 7 6 5 32 32 H 1.09001 * 109.46924 * 59.99900 * 7 6 5 33 33 H 1.09002 * 109.47458 * 300.00042 * 8 7 6 34 34 H 1.09001 * 109.47053 * 60.00319 * 8 7 6 35 35 H 1.08999 * 113.48247 * 336.06067 * 10 9 8 36 36 H 1.09002 * 113.47648 * 106.52790 * 10 9 8 37 37 H 0.96694 * 114.00226 * 273.84042 * 12 11 10 38 38 H 0.96997 * 119.99861 * 180.02562 * 16 15 13 39 39 H 1.08993 * 113.47686 * 253.47216 * 21 9 8 40 40 H 1.09009 * 113.47502 * 23.87986 * 21 9 8 41 41 H 1.07999 * 119.61911 * 180.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2015 0.0000 4 6 3.5763 1.1905 -0.0005 5 6 4.2266 -0.0343 -0.0016 6 6 5.7323 -0.0989 -0.0028 7 6 6.2429 -0.1214 1.4392 8 6 7.7714 -0.1876 1.4380 9 7 8.2617 -0.2098 2.8226 10 6 8.5885 1.1504 3.2894 11 6 9.8382 0.5607 3.9581 12 8 9.6188 0.0766 5.2846 13 6 11.0721 1.4169 3.8336 14 1 11.7686 1.2463 3.0261 15 6 11.3116 2.4183 4.7506 16 7 12.3882 3.1659 4.6417 17 14 10.1071 2.7132 6.1476 18 1 10.4962 1.8879 7.3192 19 1 10.1285 4.1493 6.5247 20 1 8.7391 2.3368 5.7094 21 6 9.7046 -0.5116 2.8676 22 6 3.4766 -1.1949 -0.0026 23 7 2.1586 -1.1463 -0.0005 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5143 27 1 1.6508 2.1373 -0.0004 28 1 4.1366 2.1139 -0.0001 29 1 6.0567 -1.0035 -0.5174 30 1 6.1329 0.7749 -0.5165 31 1 5.9185 0.7831 1.9537 32 1 5.8421 -0.9952 1.9529 33 1 8.0955 -1.0923 0.9236 34 1 8.1725 0.6861 0.9241 35 1 8.8157 1.8445 2.4803 36 1 7.8648 1.5516 3.9990 37 1 9.7036 0.7539 5.9694 38 1 12.5569 3.8701 5.2871 39 1 9.9268 -1.5189 3.2196 40 1 10.2294 -0.2621 1.9453 41 1 3.9753 -2.1528 -0.0031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428281106.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:01 Heat of formation + Delta-G solvation = 22.343641 kcal Electronic energy + Delta-G solvation = -20649.519845 eV Core-core repulsion = 17530.589058 eV Total energy + Delta-G solvation = -3118.930787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.47768 -39.52057 -35.88844 -34.65253 -32.47820 -32.45236 -32.12008 -29.18402 -27.23192 -25.40663 -25.19320 -23.77635 -23.01647 -21.33881 -20.74364 -19.10509 -17.34026 -16.88730 -16.38990 -16.22890 -15.51928 -15.16544 -14.93200 -14.69818 -14.10461 -13.76611 -13.42191 -13.35609 -13.15753 -12.91988 -12.74352 -12.53876 -12.46473 -12.14705 -11.92524 -11.81135 -11.53175 -11.06722 -10.86546 -10.73527 -10.45265 -10.21391 -9.97224 -9.92513 -9.58756 -9.25419 -8.94963 -8.86712 -8.55236 -8.12053 -6.35147 -4.39096 0.91826 1.11764 3.05820 3.13921 3.20574 3.57505 4.10870 4.11141 4.49655 4.52150 4.68312 4.74339 4.79966 4.88361 5.04544 5.22448 5.23957 5.28861 5.31914 5.35876 5.50885 5.55755 5.60988 5.73065 5.79996 5.82749 5.88192 5.92789 5.97947 6.04237 6.18322 6.32374 6.41994 6.47781 6.55863 6.62895 6.87229 6.95993 7.31348 7.77806 7.82428 8.11637 8.67062 8.68321 9.24397 10.77430 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.030017 B = 0.003183 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.573900 B = 8795.558403 C = 9118.401044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.114 3.886 3 C -0.170 4.170 4 C -0.071 4.071 5 C -0.130 4.130 6 C -0.077 4.077 7 C -0.102 4.102 8 C 0.017 3.983 9 N -0.473 5.473 10 C -0.033 4.033 11 C 0.202 3.798 12 O -0.548 6.548 13 C -0.534 4.534 14 H 0.086 0.914 15 C 0.077 3.923 16 N -0.882 5.882 17 Si 0.861 3.139 18 H -0.267 1.267 19 H -0.286 1.286 20 H -0.254 1.254 21 C 0.018 3.982 22 C 0.105 3.895 23 N -0.485 5.485 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.132 0.868 28 H 0.134 0.866 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.347 0.653 38 H 0.269 0.731 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.579 -3.286 -9.982 21.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.023 4.023 3 C -0.190 4.190 4 C -0.097 4.097 5 C -0.132 4.132 6 C -0.115 4.115 7 C -0.140 4.140 8 C -0.112 4.112 9 N -0.195 5.195 10 C -0.163 4.163 11 C 0.161 3.839 12 O -0.359 6.359 13 C -0.571 4.571 14 H 0.104 0.896 15 C -0.128 4.128 16 N -0.519 5.519 17 Si 0.690 3.310 18 H -0.194 1.194 19 H -0.213 1.213 20 H -0.180 1.180 21 C -0.110 4.110 22 C -0.052 4.052 23 N -0.194 5.194 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.150 0.850 28 H 0.152 0.848 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.199 0.801 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -19.547 -4.882 -9.891 22.445 hybrid contribution 0.610 2.196 0.491 2.331 sum -18.937 -2.687 -9.400 21.312 Atomic orbital electron populations 1.20689 0.89024 1.03252 1.03012 1.21269 0.96981 0.88489 0.95601 1.21942 0.94891 0.99217 1.02972 1.21541 0.94290 0.98133 0.95733 1.20950 0.97530 0.94075 1.00681 1.20570 0.89416 1.03237 0.98310 1.21422 0.95258 1.02858 0.94431 1.22683 0.95276 1.00817 0.92413 1.68865 1.16111 1.17348 1.17172 1.25001 0.99920 0.91041 1.00312 1.20085 0.91859 0.91580 0.80395 1.86462 1.93914 1.39423 1.16103 1.21321 1.06521 1.14914 1.14384 0.89567 1.25019 0.95006 0.95292 0.97457 1.69872 1.25505 1.20128 1.36365 0.87277 0.82605 0.77859 0.83246 1.19391 1.21310 1.17961 1.23900 0.88173 1.00597 0.98372 1.22666 0.89083 0.98160 0.95296 1.67509 1.09961 1.29394 1.12546 0.90513 0.90877 0.90600 0.84969 0.84805 0.90574 0.90795 0.92029 0.91274 0.91560 0.93887 0.91010 0.91451 0.80078 0.92077 0.90556 0.90971 0.82766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 10.17 36.00 0.37 -0.40 16 2 C 0.11 1.21 6.78 -82.59 -0.56 0.65 16 3 C -0.17 -1.65 9.74 -39.45 -0.38 -2.03 16 4 C -0.07 -0.73 9.86 -39.28 -0.39 -1.12 16 5 C -0.13 -1.42 5.15 -104.48 -0.54 -1.96 16 6 C -0.08 -0.79 5.37 -27.88 -0.15 -0.94 16 7 C -0.10 -1.33 5.52 -26.74 -0.15 -1.48 16 8 C 0.02 0.26 4.82 -3.82 -0.02 0.24 16 9 N -0.47 -9.21 6.33 -244.61 -1.55 -10.76 16 10 C -0.03 -0.71 6.55 -7.55 -0.05 -0.76 16 11 C 0.20 4.86 1.09 -91.24 -0.10 4.76 16 12 O -0.55 -13.73 13.32 -35.23 -0.47 -14.20 16 13 C -0.53 -14.53 9.28 -34.44 -0.32 -14.85 16 14 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 15 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 16 N -0.88 -25.66 13.96 55.43 0.77 -24.89 16 17 Si 0.86 20.11 24.41 -169.99 -4.15 15.96 16 18 H -0.27 -6.06 7.06 56.52 0.40 -5.66 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.25 -5.72 5.47 56.52 0.31 -5.41 16 21 C 0.02 0.38 7.09 -7.54 -0.05 0.33 16 22 C 0.11 1.20 10.86 -17.55 -0.19 1.01 16 23 N -0.48 -6.00 10.27 -9.48 -0.10 -6.09 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 28 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 29 H 0.08 0.70 8.09 -51.92 -0.42 0.28 16 30 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 34 H 0.04 0.65 7.30 -51.93 -0.38 0.27 16 35 H 0.07 1.50 7.38 -51.93 -0.38 1.11 16 36 H 0.07 1.47 7.11 -51.93 -0.37 1.10 16 37 H 0.35 8.35 3.17 45.56 0.14 8.50 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.07 1.41 7.87 -51.92 -0.41 1.01 16 41 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 332.11 15.07 5.00 5.00 Total: -1.00 -30.85 332.11 -9.23 -40.08 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -6.11 Total: 9.43 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -2.63 Total: -14.54 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: -0.87 Total: -41.74 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.47 Total: -14.20 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.15 Total: 15.96 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.85 -9.23 -40.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428281106.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.425 kcal (2) G-P(sol) polarization free energy of solvation -30.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds